Experiment set14IT065 for Klebsiella michiganensis M5al

Compare to:

LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS24885 +1.9 1.6 PTS galactitol transporter subunit IIB compare
BWI76_RS01325 +1.9 2.6 twin-arginine translocase subunit TatB compare
BWI76_RS16210 +1.9 1.5 hypothetical protein compare
BWI76_RS00345 +1.6 3.6 protein disulfide oxidoreductase DsbA compare
BWI76_RS27430 +1.4 0.5 (p)ppGpp synthetase compare
BWI76_RS14670 +1.4 2.7 hypothetical protein compare
BWI76_RS08765 +1.4 3.1 8-amino-7-oxononanoate synthase compare
BWI76_RS06080 +1.4 1.9 taurine dioxygenase compare
BWI76_RS11105 +1.4 1.2 aminodeoxychorismate lyase compare
BWI76_RS03105 +1.4 1.5 myo-inosose-2 dehydratase compare
BWI76_RS13480 +1.4 1.5 XRE family transcriptional regulator compare
BWI76_RS14775 +1.3 3.3 creatinine amidohydrolase compare
BWI76_RS18165 +1.3 1.4 NUDIX pyrophosphatase compare
BWI76_RS03310 +1.3 1.7 AraC family transcriptional regulator compare
BWI76_RS16955 +1.3 1.2 hypothetical protein compare
BWI76_RS12780 +1.2 1.9 hypothetical protein compare
BWI76_RS15800 +1.2 3.0 transcriptional regulator compare
BWI76_RS16160 +1.2 2.6 LysR family transcriptional regulator compare
BWI76_RS17765 +1.2 2.1 hypothetical protein compare
BWI76_RS16330 +1.2 1.9 oxidoreductase compare
BWI76_RS15940 +1.1 1.2 DMSO reductase maturation protein DsmD compare
BWI76_RS14435 +1.1 1.8 glutamine ABC transporter ATP-binding protein compare
BWI76_RS13685 +1.1 2.4 IclR family transcriptional regulator compare
BWI76_RS23020 +1.1 1.5 cobalamin biosynthesis protein CbiQ compare
BWI76_RS20795 +1.1 1.6 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS19330 +1.1 0.9 HAD family hydrolase compare
BWI76_RS24060 +1.0 3.3 SprT family protein compare
BWI76_RS14870 +1.0 1.0 hypothetical protein compare
BWI76_RS16290 +1.0 2.6 Mal regulon transcriptional regulator MalI compare
BWI76_RS14805 +1.0 2.2 hypothetical protein compare
BWI76_RS01330 +1.0 1.7 twin-arginine translocase subunit TatC compare
BWI76_RS12465 +1.0 1.5 phage shock protein D compare
BWI76_RS03595 +1.0 1.8 ethanolamine utilization protein EutM compare
BWI76_RS24350 +1.0 2.5 quinol monooxygenase compare
BWI76_RS16240 +1.0 3.3 anti-adapter protein IraM compare
BWI76_RS17675 +1.0 1.2 hypothetical protein compare
BWI76_RS14780 +1.0 2.1 phosphotriesterase compare
BWI76_RS06340 +1.0 2.6 hypothetical protein compare
BWI76_RS24260 +1.0 1.9 hypothetical protein compare
BWI76_RS16660 +1.0 5.0 SfnB family sulfur acquisition oxidoreductase compare
BWI76_RS11750 +1.0 1.6 chitooligosaccharide deacetylase compare
BWI76_RS14075 +1.0 0.9 TetR family transcriptional regulator compare
BWI76_RS11845 +0.9 2.7 tryptophan synthase subunit beta compare
BWI76_RS20970 +0.9 1.6 phosphoribosylglycinamide formyltransferase compare
BWI76_RS19310 +0.9 2.6 ABC transporter permease compare
BWI76_RS04840 +0.9 2.7 prepilin peptidase-dependent pilin compare
BWI76_RS23055 +0.9 2.4 cobalamin biosynthesis protein CbiG compare
BWI76_RS20050 +0.9 1.8 hypothetical protein compare
BWI76_RS23030 +0.9 1.9 cobalamin biosynthesis protein CbiM compare
BWI76_RS04465 +0.9 1.9 carbamoyl-phosphate synthase small subunit compare
BWI76_RS15180 +0.9 3.0 altronate oxidoreductase compare
BWI76_RS04155 +0.9 3.9 membrane protein compare
BWI76_RS00560 +0.9 3.2 hypothetical protein compare
BWI76_RS01065 +0.9 1.7 ATP-dependent RNA helicase RhlB compare
BWI76_RS26285 +0.9 2.8 glycerophosphodiester phosphodiesterase compare
BWI76_RS19890 +0.9 4.2 alpha-ketoglutarate-dependent dioxygenase AlkB compare
BWI76_RS05235 +0.9 0.8 hypothetical protein compare
BWI76_RS10560 +0.9 2.7 gamma-glutamyltransferase compare
BWI76_RS16170 +0.9 3.0 amidohydrolase compare
BWI76_RS20965 +0.9 2.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS01205 +0.9 1.6 DUF484 family protein compare
BWI76_RS12855 +0.9 1.3 enamine deaminase RidA compare
BWI76_RS18130 +0.9 2.6 zinc ABC transporter substrate-binding protein compare
BWI76_RS04895 +0.9 1.8 hypothetical protein compare
BWI76_RS24810 +0.8 3.0 hypothetical protein compare
BWI76_RS08280 +0.8 1.6 acyl-CoA esterase compare
BWI76_RS05800 +0.8 2.0 phage transcriptional activator, Ogr/delta compare
BWI76_RS14845 +0.8 1.3 hypothetical protein compare
BWI76_RS20390 +0.8 1.3 erythronate-4-phosphate dehydrogenase compare
BWI76_RS06745 +0.8 1.8 N-acetyltransferase GCN5 compare
BWI76_RS16115 +0.8 3.1 fumarate hydratase compare
BWI76_RS12045 +0.8 0.8 hypothetical protein compare
BWI76_RS07855 +0.8 1.7 PucR family transcriptional regulator compare
BWI76_RS15900 +0.8 2.8 hypothetical protein compare
BWI76_RS19390 +0.8 1.6 LysR family transcriptional regulator compare
BWI76_RS02695 +0.8 4.0 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS16015 +0.8 1.8 pheromone autoinducer 2 transporter compare
BWI76_RS05975 +0.8 2.3 ABC transporter ATP-binding protein compare
BWI76_RS16205 +0.8 3.0 NAD(P) transhydrogenase subunit alpha compare
BWI76_RS00025 +0.8 0.9 hypothetical protein compare
BWI76_RS26625 +0.8 2.7 gluconate transporter periplasmic gluconate-binding protein compare
BWI76_RS07475 +0.8 1.2 DNA-binding transcriptional regulator RamA compare
BWI76_RS17200 +0.8 1.7 hypothetical protein compare
BWI76_RS13130 +0.8 1.7 phenylacetic acid degradation protein PaaD compare
BWI76_RS25065 +0.8 1.4 polyribonucleotide nucleotidyltransferase compare
BWI76_RS02625 +0.8 1.4 PTS ascorbate transporter subunit IIB compare
BWI76_RS17100 +0.7 1.4 glutathione peroxidase compare
BWI76_RS23025 +0.7 2.5 cobalt ABC transporter substrate-binding protein CbiN compare
BWI76_RS02655 +0.7 2.1 hypothetical protein compare
BWI76_RS11245 +0.7 2.3 spermidine/putrescine ABC transporter permease PotC compare
BWI76_RS05670 +0.7 3.2 porin compare
BWI76_RS01565 +0.7 1.4 NADH pyrophosphatase compare
BWI76_RS05880 +0.7 0.8 AraC-type DNA-binding domain-containing protein compare
BWI76_RS24255 +0.7 1.8 thiol:disulfide oxidoreductase compare
BWI76_RS18075 +0.7 4.0 oligopeptidase B compare
BWI76_RS11180 +0.7 3.3 hypothetical protein compare
BWI76_RS11675 +0.7 1.9 arginine N-succinyltransferase compare
BWI76_RS13135 +0.7 1.5 3-oxoadipyl-CoA thiolase compare
BWI76_RS12665 +0.7 1.7 hypothetical protein compare
BWI76_RS05790 +0.7 0.9 phage DNA-binding protein compare
BWI76_RS21325 +0.7 1.1 hypothetical protein compare
BWI76_RS26085 +0.7 0.4 3-dehydroquinate synthase compare
BWI76_RS25935 +0.7 2.4 glutathione-regulated potassium-efflux system ancillary protein KefG compare
BWI76_RS06765 +0.7 1.5 transcriptional regulator compare
BWI76_RS23320 +0.7 1.0 hypothetical protein compare
BWI76_RS00760 +0.7 1.5 cell division protein FtsN compare
BWI76_RS03620 +0.7 3.0 TetR family transcriptional regulator compare
BWI76_RS06810 +0.7 1.4 hypothetical protein compare
BWI76_RS26505 +0.7 1.5 nickel ABC transporter permease subunit NikB compare
BWI76_RS24035 +0.7 2.2 hypothetical protein compare
BWI76_RS07710 +0.7 2.2 invasin-like protein compare
BWI76_RS20025 +0.7 2.6 HAMP domain-containing histidine kinase compare
BWI76_RS02585 +0.7 2.2 hypothetical protein compare
BWI76_RS12545 +0.7 1.1 hypothetical protein compare
BWI76_RS06595 +0.7 1.4 hypothetical protein compare
BWI76_RS16025 +0.7 1.9 triphosphoribosyl-dephospho-CoA synthase compare
BWI76_RS11380 +0.7 1.6 iron-dicitrate transporter substrate-binding subunit compare
BWI76_RS01545 +0.7 1.4 thiamine biosynthesis protein ThiS compare
BWI76_RS09530 +0.7 0.9 hypothetical protein compare
BWI76_RS07965 +0.7 3.2 anaerobic C4-dicarboxylate transporter DcuC compare
BWI76_RS09565 +0.7 3.3 hybrid-cluster NAD(P)-dependent oxidoreductase compare
BWI76_RS07265 +0.7 2.6 ABC transporter ATP-binding protein compare
BWI76_RS17390 +0.7 1.2 DsrE family protein compare
BWI76_RS10375 +0.7 2.8 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS04200 +0.7 2.8 phosphoglycerate mutase GpmB compare
BWI76_RS06885 +0.7 3.1 TonB family protein compare
BWI76_RS03045 +0.7 1.1 hypothetical protein compare
BWI76_RS04770 +0.7 1.6 D-alanine--D-alanine ligase compare
BWI76_RS07690 +0.7 4.3 enterochelin synthetase component D compare
BWI76_RS08835 +0.7 2.4 molybdopterin guanine dinucleotide biosynthesis protein MoaE compare
BWI76_RS10540 +0.7 2.9 allantoinase compare
BWI76_RS20800 +0.7 1.2 carboxysome shell protein compare
BWI76_RS21460 +0.7 0.7 translation inhibitor protein RaiA compare
BWI76_RS05965 +0.7 1.6 hypothetical protein compare
BWI76_RS12570 +0.7 1.8 DUF1365 domain-containing protein compare
BWI76_RS01840 +0.7 2.2 maltose ABC transporter, ATPase component (MalK) (from data) compare
BWI76_RS24275 +0.7 1.6 biopolymer transport protein ExbD compare
BWI76_RS08720 +0.7 0.8 imidazolonepropionase compare
BWI76_RS13105 +0.6 1.4 phenylacetate-CoA oxygenase subunit PaaJ compare
BWI76_RS07500 +0.6 1.4 RND transporter MFP subunit compare
BWI76_RS11255 +0.6 1.0 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS17510 +0.6 1.9 selenium metabolism hydrolase compare
BWI76_RS08770 +0.6 2.3 malonyl-ACP O-methyltransferase BioC compare
BWI76_RS20380 +0.6 0.4 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS11515 +0.6 1.0 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS12625 +0.6 2.7 isoflavone reductase compare
BWI76_RS20925 +0.6 1.9 peptidase M48 compare
BWI76_RS04210 +0.6 1.9 hypothetical protein compare
BWI76_RS19220 +0.6 1.8 hypothetical protein compare
BWI76_RS08640 +0.6 1.3 multidrug efflux pump-associated protein, AcrZ family compare
BWI76_RS17470 +0.6 1.8 MerR family transcriptional regulator compare
BWI76_RS11790 +0.6 1.4 acyl-CoA thioesterase compare
BWI76_RS19085 +0.6 5.0 protein-tyrosine-phosphatase compare
BWI76_RS25160 +0.6 1.7 transcription elongation factor GreA compare
BWI76_RS08615 +0.6 2.6 galactokinase compare
BWI76_RS22215 +0.6 2.5 PTS sorbitol transporter subunit IIC compare
BWI76_RS08985 +0.6 2.4 threonine/homoserine exporter RhtA compare
BWI76_RS17735 +0.6 0.9 D-amino acid dehydrogenase small subunit compare
BWI76_RS27610 +0.6 2.6 hydroxyacid dehydrogenase compare
BWI76_RS08905 +0.6 2.7 transketolase compare
BWI76_RS18050 +0.6 1.3 hypothetical protein compare
BWI76_RS21195 +0.6 2.2 3-phenylpropionic acid transporter compare
BWI76_RS00100 +0.6 2.4 hypothetical protein compare
BWI76_RS26705 +0.6 2.4 putative acetyltransferase compare
BWI76_RS19215 +0.6 0.8 proline-specific peptidase compare
BWI76_RS09540 +0.6 1.6 hypothetical protein compare
BWI76_RS15925 +0.6 1.6 dimethyl sulfoxide reductase subunit A compare
BWI76_RS13290 +0.6 1.5 protocatechuate 3,4-dioxygenase subunit beta compare
BWI76_RS16935 +0.6 0.8 shikimate dehydrogenase compare
BWI76_RS03005 +0.6 3.2 hypothetical protein compare
BWI76_RS20430 +0.6 2.0 penicillin-insensitive murein endopeptidase compare
BWI76_RS10040 +0.6 1.5 heat-shock protein HspQ compare
BWI76_RS24080 +0.6 1.0 DUF179 domain-containing protein compare
BWI76_RS15185 +0.6 2.3 N-acetyltransferase compare
BWI76_RS16055 +0.6 1.6 malonate decarboxylase subunit epsilon compare
BWI76_RS01775 +0.6 0.8 hypothetical protein compare
BWI76_RS12630 +0.6 2.2 regulatory protein, LysR:LysR, substrate-binding protein compare
BWI76_RS02735 +0.6 1.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS13805 +0.6 1.8 inorganic diphosphatase compare
BWI76_RS06785 +0.6 2.7 DNA-binding transcriptional repressor AcrR compare
BWI76_RS04875 +0.6 3.4 transcriptional regulator PdhR compare
BWI76_RS17970 +0.6 1.6 zinc metalloprotease HtpX compare
BWI76_RS19480 +0.6 1.3 transcriptional regulator compare
BWI76_RS23765 +0.6 3.1 peptidase M23 compare
BWI76_RS11705 +0.6 2.0 hypothetical protein compare
BWI76_RS12705 +0.6 1.8 ATP-dependent RNA helicase compare
BWI76_RS21365 +0.6 1.8 tRNA (adenosine(37)-N6)-methyltransferase TrmM compare
BWI76_RS15295 +0.6 2.4 MDR efflux pump AcrAB transcriptional activator MarA compare
BWI76_RS08755 +0.6 1.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
BWI76_RS11970 +0.6 3.5 stress response translation initiation inhibitor YciH compare
BWI76_RS16550 +0.6 1.3 tRNA-Val compare
BWI76_RS18610 +0.6 1.7 transcriptional regulator LysR compare
BWI76_RS24825 +0.6 1.2 2-hydroxy-3-oxopropionate reductase compare
BWI76_RS26965 +0.6 3.2 hypothetical protein compare
BWI76_RS15985 +0.6 1.5 LysR family transcriptional regulator compare
BWI76_RS16195 +0.6 0.8 hypothetical protein compare
BWI76_RS14680 +0.6 1.7 SefF compare
BWI76_RS18270 +0.6 1.4 hypothetical protein compare
BWI76_RS27560 +0.6 1.7 hypothetical protein compare
BWI76_RS20940 +0.6 1.2 uracil/xanthine transporter compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL across organisms