Experiment set14IT064 for Klebsiella michiganensis M5al

Compare to:

LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS26460 -4.7 -3.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS26455 -4.7 -1.9 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS05260 -4.6 -1.3 chaperone compare
BWI76_RS23265 -4.2 -1.7 hypothetical protein compare
BWI76_RS08520 -4.1 -2.0 colicin transporter TolQ compare
BWI76_RS09760 -3.8 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS14300 -3.8 -2.7 hypothetical protein compare
BWI76_RS17980 -3.7 -4.0 RNA chaperone ProQ compare
BWI76_RS21070 -3.6 -1.8 outer membrane protein assembly factor BamB compare
BWI76_RS25920 -3.5 -1.7 peptidylprolyl isomerase compare
BWI76_RS25335 -3.5 -1.7 stringent starvation protein A compare
BWI76_RS08530 -3.4 -1.4 protein TolA compare
BWI76_RS21310 -3.3 -1.3 DNA repair protein RecO compare
BWI76_RS01095 -3.1 -2.3 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS01350 -2.9 -0.8 NAD(P)H-flavin reductase compare
BWI76_RS01800 -2.9 -2.0 glucose-6-phosphate isomerase compare
BWI76_RS02815 -2.8 -1.6 fructose-bisphosphatase class I compare
BWI76_RS06535 -2.8 -1.9 endopeptidase La compare
BWI76_RS08605 -2.8 -1.8 phosphoglyceromutase compare
BWI76_RS04525 -2.8 -1.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS04705 -2.8 -4.6 DNA-binding transcriptional regulator FruR compare
BWI76_RS19905 -2.8 -4.5 OmpK36 porin compare
BWI76_RS21350 -2.7 -2.1 anti-RNA polymerase sigma factor SigE compare
BWI76_RS21580 -2.7 -1.3 SsrA-binding protein compare
BWI76_RS08210 -2.7 -1.1 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS05015 -2.6 -2.0 transcriptional regulator compare
BWI76_RS08535 -2.6 -1.2 translocation protein TolB compare
BWI76_RS09625 -2.6 -1.0 hypothetical protein compare
BWI76_RS20380 -2.6 -0.7 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS15825 -2.6 -1.0 hypothetical protein compare
BWI76_RS11155 -2.5 -2.5 penicillin-binding protein activator LpoB compare
BWI76_RS26440 -2.5 -1.2 hypothetical protein compare
BWI76_RS00240 -2.4 -1.3 FMN-binding protein MioC compare
BWI76_RS09615 -2.4 -2.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS06475 -2.4 -1.3 protoheme IX farnesyltransferase compare
BWI76_RS10990 -2.3 -3.0 dihydroorotase compare
BWI76_RS24605 -2.3 -5.4 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS19770 -2.3 -1.6 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS20150 -2.3 -2.2 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS01870 -2.3 -4.0 diacylglycerol kinase compare
BWI76_RS08525 -2.2 -1.8 colicin transporter compare
BWI76_RS24595 -2.2 -3.6 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS18605 -2.2 -1.8 oxidoreductase molybdopterin-binding protein compare
BWI76_RS13820 -2.2 -1.4 hypothetical protein compare
BWI76_RS04160 -2.2 -2.2 phosphoserine phosphatase compare
BWI76_RS21660 -2.2 -1.4 antirestriction protein compare
BWI76_RS11300 -2.2 -0.9 cupin compare
BWI76_RS25425 -2.2 -0.8 arginine repressor compare
BWI76_RS24740 -2.2 -2.7 GntR family transcriptional regulator compare
BWI76_RS05120 -2.1 -4.8 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS01080 -2.1 -7.0 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS10575 -2.1 -0.8 polar amino acid ABC transporter permease compare
BWI76_RS16275 -2.1 -2.7 fumarate hydratase FumA compare
BWI76_RS22755 -2.1 -3.5 phosphoadenosine phosphosulfate reductase compare
BWI76_RS02530 -2.1 -1.3 tRNA dimethylallyltransferase compare
BWI76_RS16490 -2.0 -1.3 glutaredoxin compare
BWI76_RS23885 -2.0 -0.8 2-octaprenylphenol hydroxylase compare
BWI76_RS12345 -2.0 -3.1 nitrite transporter compare
BWI76_RS19840 -1.9 -0.5 hypothetical protein compare
BWI76_RS00180 -1.9 -0.8 F0F1 ATP synthase subunit epsilon compare
BWI76_RS21075 -1.9 -1.6 membrane protein compare
BWI76_RS04645 -1.9 -3.2 3-dehydroquinase compare
BWI76_RS24885 -1.9 -0.9 PTS galactitol transporter subunit IIB compare
BWI76_RS21370 -1.9 -1.0 ATP-dependent RNA helicase SrmB compare
BWI76_RS24600 -1.9 -1.7 dihydroxyacetone kinase compare
BWI76_RS22690 -1.8 -1.6 adenylyl-sulfate kinase compare
BWI76_RS21345 -1.8 -1.1 sigma-E factor regulatory protein RseB compare
BWI76_RS13160 -1.8 -1.4 azoreductase compare
BWI76_RS20130 -1.8 -3.7 NADH-quinone oxidoreductase subunit N compare
BWI76_RS01135 -1.7 -2.8 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS23360 -1.7 -1.3 diaminopimelate decarboxylase compare
BWI76_RS06520 -1.7 -3.0 trigger factor compare
BWI76_RS05915 -1.7 -2.5 helix-turn-helix transcriptional regulator compare
BWI76_RS09640 -1.7 -1.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS21290 -1.7 -3.0 DNA-binding transcriptional regulator compare
BWI76_RS21780 -1.7 -2.7 S-(hydroxymethyl)glutathione synthase compare
BWI76_RS26095 -1.7 -0.7 shikimate kinase compare
BWI76_RS14935 -1.7 -1.0 NIPSNAP family containing protein compare
BWI76_RS11440 -1.7 -1.0 hypothetical protein compare
BWI76_RS23365 -1.6 -3.7 LysR family transcriptional regulator compare
BWI76_RS00355 -1.6 -0.7 DNA polymerase I compare
BWI76_RS01220 -1.6 -3.7 DNA-dependent helicase II compare
BWI76_RS17860 -1.6 -1.4 YoaH family protein compare
BWI76_RS11170 -1.6 -1.0 hypothetical protein compare
BWI76_RS08395 -1.6 -1.4 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS01110 -1.6 -4.1 TDP-fucosamine acetyltransferase compare
BWI76_RS09195 -1.6 -0.8 N-acetyltransferase compare
BWI76_RS23490 -1.6 -3.9 fimbrial protein compare
BWI76_RS15195 -1.6 -1.0 DUF4186 domain-containing protein compare
BWI76_RS27440 -1.6 -1.1 DNA helicase RecG compare
BWI76_RS24275 -1.6 -2.1 biopolymer transport protein ExbD compare
BWI76_RS04060 -1.5 -2.0 hypothetical protein compare
BWI76_RS24400 -1.5 -2.3 outer membrane channel protein TolC compare
BWI76_RS11035 -1.5 -2.5 putative LysR-family transcriptional regulator compare
BWI76_RS01090 -1.5 -3.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS02680 -1.5 -2.5 EamA family transporter compare
BWI76_RS02180 -1.5 -1.2 hypothetical protein compare
BWI76_RS17975 -1.5 -2.7 tail-specific protease compare
BWI76_RS12090 -1.5 -1.8 HNH endonuclease compare
BWI76_RS11275 -1.5 -4.8 sensor protein PhoQ compare
BWI76_RS25280 -1.5 -0.9 RNase adaptor protein RapZ compare
BWI76_RS01125 -1.5 -3.8 4-alpha-L-fucosyltransferase compare
BWI76_RS22420 -1.5 -1.6 LacI family transcriptional regulator compare
BWI76_RS07465 -1.5 -1.1 TetR family transcriptional regulator compare
BWI76_RS15635 -1.5 -2.9 hypothetical protein compare
BWI76_RS19495 -1.4 -0.8 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS18815 -1.4 -1.8 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS00715 -1.4 -1.0 two-component sensor histidine kinase compare
BWI76_RS21260 -1.4 -3.8 two-component sensor histidine kinase compare
BWI76_RS21450 -1.4 -1.2 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS13240 -1.4 -1.2 hypothetical protein compare
BWI76_RS08500 -1.4 -1.8 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS25980 -1.4 -1.8 hypothetical protein compare
BWI76_RS26620 -1.4 -0.5 Fe-S biogenesis protein NfuA compare
BWI76_RS01170 -1.4 -3.0 uroporphyrinogen-III C-methyltransferase compare
BWI76_RS15115 -1.4 -1.0 MFS transporter compare
BWI76_RS07185 -1.4 -0.8 hypothetical protein compare
BWI76_RS09755 -1.4 -2.1 phosphoserine transaminase compare
BWI76_RS26570 -1.4 -0.9 anion permease compare
BWI76_RS01185 -1.4 -0.9 adenylate cyclase compare
BWI76_RS15110 -1.4 -3.1 putative excinuclease ABC subunit A compare
BWI76_RS21570 -1.4 -1.5 RnfH family protein compare
BWI76_RS08385 -1.4 -1.8 citrate (Si)-synthase compare
BWI76_RS23495 -1.4 -5.0 hypothetical protein compare
BWI76_RS02340 -1.3 -2.9 membrane protein FxsA compare
BWI76_RS20135 -1.3 -2.1 NADH-quinone oxidoreductase subunit M compare
BWI76_RS09255 -1.3 -2.1 hypothetical protein compare
BWI76_RS20360 -1.3 -0.6 cell division protein DedD compare
BWI76_RS13330 -1.3 -1.0 tellurite resistance methyltransferase TehB compare
BWI76_RS01235 -1.3 -1.8 hypothetical protein compare
BWI76_RS09970 -1.3 -0.8 porin OmpA compare
BWI76_RS20280 -1.3 -2.1 phosphodiesterase compare
BWI76_RS14390 -1.3 -1.0 hypothetical protein compare
BWI76_RS13590 -1.3 -1.6 hypothetical protein compare
BWI76_RS19730 -1.3 -2.4 1-phosphofructokinase compare
BWI76_RS12170 -1.3 -1.7 hypothetical protein compare
BWI76_RS19460 -1.3 -1.7 lipoprotein compare
BWI76_RS15530 -1.3 -2.0 hypothetical protein compare
BWI76_RS02610 -1.3 -3.3 transcriptional regulator compare
BWI76_RS17720 -1.2 -0.3 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS09305 -1.2 -1.9 hypothetical protein compare
BWI76_RS08425 -1.2 -2.6 succinyl-CoA ligase subunit beta compare
BWI76_RS00440 -1.2 -1.0 CopG family transcriptional regulator compare
BWI76_RS23500 -1.2 -7.3 hypothetical protein compare
BWI76_RS10465 -1.2 -2.5 hypothetical protein compare
BWI76_RS19685 -1.2 -2.7 lysine transporter compare
BWI76_RS15680 -1.2 -2.9 hypothetical protein compare
BWI76_RS25300 -1.2 -2.4 hybrid sensor histidine kinase/response regulator compare
BWI76_RS18455 -1.2 -0.6 tRNA-Ser compare
BWI76_RS12070 -1.2 -0.6 hypothetical protein compare
BWI76_RS09025 -1.2 -1.3 GntR family transcriptional regulator compare
BWI76_RS24770 -1.2 -1.6 hypothetical protein compare
BWI76_RS01200 -1.2 -0.7 diaminopimelate epimerase compare
BWI76_RS23920 -1.2 -1.5 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS08405 -1.2 -1.9 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS20190 -1.2 -3.0 NADH-quinone oxidoreductase subunit A compare
BWI76_RS12050 -1.2 -2.6 hypothetical protein compare
BWI76_RS08495 -1.2 -2.7 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS26470 -1.2 -2.4 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS08020 -1.2 -4.1 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS12395 -1.2 -4.7 zinc-binding alcohol dehydrogenase compare
BWI76_RS00380 -1.2 -4.6 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS12270 -1.2 -3.1 hypothetical protein compare
BWI76_RS02550 -1.1 -3.0 protease modulator HflC compare
BWI76_RS12320 -1.1 -4.2 hypothetical protein compare
BWI76_RS13755 -1.1 -1.2 hypothetical protein compare
BWI76_RS17310 -1.1 -2.6 AsnC family transcriptional regulator compare
BWI76_RS11235 -1.1 -1.0 hypothetical protein compare
BWI76_RS21235 -1.1 -0.6 hypothetical protein compare
BWI76_RS26075 -1.1 -1.1 DNA adenine methylase compare
BWI76_RS14570 -1.1 -1.7 hypothetical protein compare
BWI76_RS25700 -1.1 -3.7 heavy metal-responsive transcriptional regulator compare
BWI76_RS22625 -1.1 -0.8 transcriptional regulator compare
BWI76_RS09335 -1.1 -0.7 baseplate assembly protein W compare
BWI76_RS19850 -1.1 -1.3 tRNA-Pro compare
BWI76_RS22475 -1.1 -2.4 heme ABC transporter ATP-binding protein compare
BWI76_RS18090 -1.1 -1.4 phosphoribosylglycinamide formyltransferase 2 compare
BWI76_RS16210 -1.1 -0.8 hypothetical protein compare
BWI76_RS23580 -1.1 -1.4 hypothetical protein compare
BWI76_RS26080 -1.1 -2.7 cell division protein DamX compare
BWI76_RS26730 -1.1 -2.8 inner membrane protein YhjD compare
BWI76_RS10910 -1.1 -1.2 hypothetical protein compare
BWI76_RS05010 -1.1 -2.4 tRNA glutamyl-Q synthetase compare
BWI76_RS26665 -1.1 -1.3 DNA-binding response regulator compare
BWI76_RS12420 -1.1 -0.7 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS11600 -1.1 -1.1 selenide, water dikinase SelD compare
BWI76_RS27225 -1.1 -1.6 rhodanese-like domain-containing protein compare
BWI76_RS14375 -1.1 -2.4 hypothetical protein compare
BWI76_RS19035 -1.1 -4.0 dTDP-rhamnosyl transferase compare
BWI76_RS16355 -1.1 -1.4 electron transport complex subunit A compare
BWI76_RS03225 -1.1 -4.2 transcriptional regulator compare
BWI76_RS16230 -1.1 -1.2 dihydromonapterin reductase compare
BWI76_RS17955 -1.0 -1.9 hypothetical protein compare
BWI76_RS09190 -1.0 -1.3 hypothetical protein compare
BWI76_RS00940 -1.0 -3.6 transcriptional regulator HdfR compare
BWI76_RS13595 -1.0 -2.8 transcriptional regulator compare
BWI76_RS21740 -1.0 -2.4 transcriptional regulator, LysR family protein compare
BWI76_RS08430 -1.0 -2.7 succinate--CoA ligase subunit alpha compare
BWI76_RS26270 -1.0 -2.2 N-acetyltransferase compare
BWI76_RS10900 -1.0 -2.4 putative oxidoreductase compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL across organisms