Experiment set14IT064 for Klebsiella michiganensis M5al

Compare to:

LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS14775 +1.8 1.7 creatinine amidohydrolase compare
BWI76_RS14435 +1.6 2.3 glutamine ABC transporter ATP-binding protein compare
BWI76_RS12790 +1.4 1.4 lactate dehydrogenase compare
BWI76_RS00760 +1.3 2.8 cell division protein FtsN compare
BWI76_RS15260 +1.3 1.5 hypothetical protein compare
BWI76_RS01195 +1.3 1.8 membrane protein compare
BWI76_RS14825 +1.3 1.5 dienelactone hydrolase family protein compare
BWI76_RS21685 +1.3 1.3 hypothetical protein compare
BWI76_RS19240 +1.2 2.2 ABC transporter substrate-binding protein compare
BWI76_RS16955 +1.2 1.1 hypothetical protein compare
BWI76_RS20720 +1.2 0.9 hypothetical protein compare
BWI76_RS13480 +1.1 1.1 XRE family transcriptional regulator compare
BWI76_RS06740 +1.1 3.9 50S ribosomal protein L36 compare
BWI76_RS20340 +1.1 2.0 histidine ABC transporter substrate-binding protein HisJ compare
BWI76_RS01330 +1.1 2.1 twin-arginine translocase subunit TatC compare
BWI76_RS11810 +1.1 1.5 outer membrane protein OmpW compare
BWI76_RS01995 +1.1 1.8 AraC family transcriptional regulator compare
BWI76_RS23915 +1.1 1.6 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS05880 +1.1 0.8 AraC-type DNA-binding domain-containing protein compare
BWI76_RS23320 +1.1 1.5 hypothetical protein compare
BWI76_RS24720 +1.1 1.8 hypothetical protein compare
BWI76_RS24080 +1.0 1.5 DUF179 domain-containing protein compare
BWI76_RS18065 +1.0 1.5 DNA polymerase III subunit theta compare
BWI76_RS14805 +1.0 1.9 hypothetical protein compare
BWI76_RS16055 +1.0 3.2 malonate decarboxylase subunit epsilon compare
BWI76_RS12780 +1.0 1.6 hypothetical protein compare
BWI76_RS14075 +1.0 1.0 TetR family transcriptional regulator compare
BWI76_RS16485 +1.0 1.1 ribonuclease T compare
BWI76_RS05070 +1.0 2.4 type II secretion system protein GspH compare
BWI76_RS06800 +1.0 1.8 DUF2496 domain-containing protein compare
BWI76_RS20970 +1.0 1.6 phosphoribosylglycinamide formyltransferase compare
BWI76_RS19310 +1.0 2.9 ABC transporter permease compare
BWI76_RS11675 +1.0 2.4 arginine N-succinyltransferase compare
BWI76_RS10700 +1.0 1.4 XRE family transcriptional regulator compare
BWI76_RS23030 +1.0 2.1 cobalamin biosynthesis protein CbiM compare
BWI76_RS26405 +0.9 1.3 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS06505 +0.9 2.8 hypothetical protein compare
BWI76_RS23250 +0.9 0.9 hypothetical protein compare
BWI76_RS14835 +0.9 1.3 hypothetical protein compare
BWI76_RS17930 +0.9 2.0 cold-shock protein CspC compare
BWI76_RS05075 +0.9 0.7 type II secretion system protein GspG compare
BWI76_RS22130 +0.9 2.0 fructose-1-phosphate/6-phosphogluconate phosphatase compare
BWI76_RS06730 +0.9 1.1 lac repressor compare
BWI76_RS10890 +0.9 2.6 glyoxylate/hydroxypyruvate reductase A compare
BWI76_RS11755 +0.9 2.1 catalase HPII compare
BWI76_RS04155 +0.9 2.5 membrane protein compare
BWI76_RS14975 +0.9 2.9 glyoxalase-like domain protein compare
BWI76_RS16590 +0.9 1.8 short-chain dehydrogenase compare
BWI76_RS08765 +0.9 1.9 8-amino-7-oxononanoate synthase compare
BWI76_RS12480 +0.9 2.4 TIGR01620 family protein compare
BWI76_RS15035 +0.9 1.2 metal ABC transporter permease compare
BWI76_RS01190 +0.9 0.8 iron donor protein CyaY compare
BWI76_RS15940 +0.9 0.8 DMSO reductase maturation protein DsmD compare
BWI76_RS07350 +0.9 3.5 alcohol dehydrogenase compare
BWI76_RS05465 +0.9 1.0 amidohydrolase compare
BWI76_RS07255 +0.9 2.0 hypothetical protein compare
BWI76_RS16760 +0.8 2.3 lipase compare
BWI76_RS07955 +0.8 3.3 nucleoside diphosphate kinase regulator compare
BWI76_RS17945 +0.8 1.0 hypothetical protein compare
BWI76_RS09830 +0.8 1.8 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
BWI76_RS05430 +0.8 2.3 UbiE/COQ5 family methyltransferase compare
BWI76_RS05570 +0.8 0.7 hypothetical protein compare
BWI76_RS07780 +0.8 0.9 hypothetical protein compare
BWI76_RS11805 +0.8 1.9 hypothetical protein compare
BWI76_RS15285 +0.8 2.3 stress protection protein MarC compare
BWI76_RS04805 +0.8 2.5 8-oxo-dGTP diphosphatase compare
BWI76_RS10035 +0.8 0.8 hypothetical protein compare
BWI76_RS15270 +0.8 2.4 phenazine biosynthesis protein PhzF family compare
BWI76_RS00025 +0.8 0.8 hypothetical protein compare
BWI76_RS16000 +0.8 1.2 multidrug transporter subunit MdtI compare
BWI76_RS16345 +0.8 3.7 nucleoid-associated protein compare
BWI76_RS01205 +0.8 1.4 DUF484 family protein compare
BWI76_RS20205 +0.8 3.0 aminotransferase AlaT compare
BWI76_RS12910 +0.8 1.9 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
BWI76_RS15440 +0.8 1.8 hypothetical protein compare
BWI76_RS23705 +0.8 2.1 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS06910 +0.8 1.4 transcriptional regulator compare
BWI76_RS15735 +0.8 1.9 hypothetical protein compare
BWI76_RS24060 +0.8 2.6 SprT family protein compare
BWI76_RS07765 +0.8 1.4 thioesterase compare
BWI76_RS17970 +0.8 2.0 zinc metalloprotease HtpX compare
BWI76_RS18735 +0.8 2.8 tautomerase family protein compare
BWI76_RS22850 +0.8 1.9 tRNA pseudouridine synthase TruC compare
BWI76_RS09690 +0.8 1.9 dimethyl sulfoxide reductase compare
BWI76_RS20750 +0.8 0.5 carboxysome structural protein EutK compare
BWI76_RS15915 +0.8 1.7 YnfC family lipoprotein compare
BWI76_RS17400 +0.8 0.8 transporter compare
BWI76_RS12670 +0.7 0.6 DNA polymerase V subunit UmuD compare
BWI76_RS26285 +0.7 2.7 glycerophosphodiester phosphodiesterase compare
BWI76_RS03195 +0.7 4.2 P4 phage protein compare
BWI76_RS16170 +0.7 2.1 amidohydrolase compare
BWI76_RS14930 +0.7 1.4 hypothetical protein compare
BWI76_RS10585 +0.7 1.8 amino acid ABC transporter ATP-binding protein compare
BWI76_RS19885 +0.7 2.0 multidrug ABC transporter permease/ATP-binding protein compare
BWI76_RS13250 +0.7 1.0 cytochrome b561 compare
BWI76_RS09820 +0.7 3.2 hypothetical protein compare
BWI76_RS14670 +0.7 1.0 hypothetical protein compare
BWI76_RS04875 +0.7 2.7 transcriptional regulator PdhR compare
BWI76_RS27940 +0.7 1.1 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BWI76_RS02255 +0.7 1.8 chaperone-modulator protein CbpM compare
BWI76_RS13320 +0.7 1.3 putative LpxA-like enzyme compare
BWI76_RS02695 +0.7 1.8 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS13245 +0.7 1.0 DNA-damage-inducible protein I compare
BWI76_RS14050 +0.7 0.9 AP endonuclease, family 2 compare
BWI76_RS23185 +0.7 1.7 propanediol utilization: polyhedral bodies pduT compare
BWI76_RS26505 +0.7 2.2 nickel ABC transporter permease subunit NikB compare
BWI76_RS19865 +0.7 1.6 ecotin compare
BWI76_RS24260 +0.7 1.6 hypothetical protein compare
BWI76_RS00345 +0.7 1.4 protein disulfide oxidoreductase DsbA compare
BWI76_RS16895 +0.7 0.8 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS22840 +0.7 1.1 transposase compare
BWI76_RS23955 +0.7 2.7 LysR family transcriptional regulator compare
BWI76_RS02270 +0.7 2.7 DSBA oxidoreductase compare
BWI76_RS21445 +0.7 1.7 hypothetical protein compare
BWI76_RS02580 +0.7 1.0 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS15790 +0.7 2.0 replication protein compare
BWI76_RS09135 +0.7 1.4 oxidoreductase compare
BWI76_RS25220 +0.7 1.5 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS16750 +0.7 4.3 acetolactate synthase compare
BWI76_RS27820 +0.7 0.7 ilvB operon leader peptide IvbL compare
BWI76_RS14010 +0.7 2.2 SDR family oxidoreductase compare
BWI76_RS15075 +0.7 2.5 non-ribosomal peptide synthase compare
BWI76_RS09630 +0.7 2.0 leucyl/phenylalanyl-tRNA--protein transferase compare
BWI76_RS23015 +0.7 1.1 cobalt transporter ATP-binding subunit compare
BWI76_RS10640 +0.7 1.8 AraC family transcriptional regulator compare
BWI76_RS06815 +0.7 1.1 adenine phosphoribosyltransferase compare
BWI76_RS13685 +0.7 1.2 IclR family transcriptional regulator compare
BWI76_RS21565 +0.7 0.5 outer membrane protein assembly factor BamE compare
BWI76_RS21795 +0.7 1.4 EAL domain-containing protein compare
BWI76_RS01835 +0.7 1.9 chemotaxis protein CheW compare
BWI76_RS01540 +0.7 1.1 thiamine biosynthesis protein ThiS compare
BWI76_RS00100 +0.7 2.8 hypothetical protein compare
BWI76_RS23025 +0.7 2.2 cobalt ABC transporter substrate-binding protein CbiN compare
BWI76_RS15300 +0.7 1.8 multiple antibiotic resistance regulatory periplasmic protein MarB compare
BWI76_RS27045 +0.7 3.0 XylR family transcriptional regulator compare
BWI76_RS06465 +0.7 1.2 IclR family transcriptional regulator compare
BWI76_RS12585 +0.7 1.8 transcriptional regulator compare
BWI76_RS13380 +0.7 1.4 hypothetical protein compare
BWI76_RS01000 +0.6 1.6 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS13805 +0.6 1.9 inorganic diphosphatase compare
BWI76_RS18920 +0.6 1.2 ATP phosphoribosyltransferase compare
BWI76_RS02690 +0.6 1.2 hypothetical protein compare
BWI76_RS16135 +0.6 1.6 acetyl-CoA acetyltransferase compare
BWI76_RS26140 +0.6 1.7 GMP/IMP nucleotidase compare
BWI76_RS19575 +0.6 1.2 maleylacetoacetate isomerase compare
BWI76_RS18240 +0.6 0.4 L-arabinose ABC transporter permease AraH compare
BWI76_RS07605 +0.6 1.0 N-acetyltransferase GCN5 compare
BWI76_RS24665 +0.6 2.7 LsrR family transcriptional regulator compare
BWI76_RS18755 +0.6 0.7 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS20765 +0.6 1.4 ethanolamine ammonia lyase large subunit compare
BWI76_RS03045 +0.6 0.9 hypothetical protein compare
BWI76_RS22620 +0.6 2.2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BWI76_RS14840 +0.6 1.8 hypothetical protein compare
BWI76_RS08745 +0.6 2.0 proline-specific permease compare
BWI76_RS16015 +0.6 1.5 pheromone autoinducer 2 transporter compare
BWI76_RS23760 +0.6 0.9 tRNA-Gly compare
BWI76_RS20390 +0.6 1.2 erythronate-4-phosphate dehydrogenase compare
BWI76_RS00505 +0.6 2.1 PTS system, sorbose-specific IIB component compare
BWI76_RS20710 +0.6 2.6 dyp-type peroxidase family protein compare
BWI76_RS26010 +0.6 2.3 cell filamentation protein Fic compare
BWI76_RS03025 +0.6 0.6 N-acetyltransferase compare
BWI76_RS17100 +0.6 0.9 glutathione peroxidase compare
BWI76_RS06410 +0.6 2.1 YajQ family cyclic di-GMP-binding protein compare
BWI76_RS06080 +0.6 1.6 taurine dioxygenase compare
BWI76_RS13270 +0.6 2.1 membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family compare
BWI76_RS21275 +0.6 2.6 lytic transglycosylase F compare
BWI76_RS11605 +0.6 2.3 DNA topoisomerase III compare
BWI76_RS04465 +0.6 1.9 carbamoyl-phosphate synthase small subunit compare
BWI76_RS15775 +0.6 1.1 replication protein compare
BWI76_RS20930 +0.6 1.3 arsenate reductase (glutaredoxin) compare
BWI76_RS23615 +0.6 2.8 multidrug transporter compare
BWI76_RS17290 +0.6 1.2 formyltetrahydrofolate deformylase compare
BWI76_RS13155 +0.6 1.4 hypothetical protein compare
BWI76_RS04770 +0.6 1.2 D-alanine--D-alanine ligase compare
BWI76_RS22950 +0.6 1.2 membrane protein compare
BWI76_RS13125 +0.6 2.0 3-hydroxyacyl-CoA dehydrogenase compare
BWI76_RS09560 +0.6 0.9 DoxX family membrane protein compare
BWI76_RS08645 +0.6 1.3 molybdate ABC transporter substrate-binding protein compare
BWI76_RS15600 +0.6 1.2 hypothetical protein compare
BWI76_RS10920 +0.6 1.1 putative TetR family transcriptional regulator compare
BWI76_RS18850 +0.6 3.2 iron-sulfur cluster assembly scaffold protein NifU compare
BWI76_RS17045 +0.6 0.8 hypothetical protein compare
BWI76_RS13045 +0.6 1.2 hypothetical protein compare
BWI76_RS27890 +0.6 1.3 GntR family transcriptional regulator compare
BWI76_RS23390 +0.6 1.7 oligogalacturonide ABC transporter ATP-binding protein compare
BWI76_RS23255 +0.6 2.1 prepilin-type cleavage/methylation domain-containing protein compare
BWI76_RS14575 +0.6 1.5 TENA/THI-4 family protein compare
BWI76_RS12520 +0.6 1.5 hypothetical protein compare
BWI76_RS26590 +0.6 1.5 transcriptional regulator compare
BWI76_RS26980 +0.6 0.9 cold-shock protein compare
BWI76_RS20220 +0.6 1.9 sugar phosphatase compare
BWI76_RS15235 +0.6 1.1 hypothetical protein compare
BWI76_RS20845 +0.6 0.9 GDP-mannose pyrophosphatase NudK compare
BWI76_RS04165 +0.6 2.2 DNA repair protein RadA compare
BWI76_RS08595 +0.6 2.3 hypothetical protein compare
BWI76_RS07475 +0.6 0.8 DNA-binding transcriptional regulator RamA compare
BWI76_RS19445 +0.6 2.4 hypothetical protein compare
BWI76_RS12985 +0.6 0.8 transcriptional regulator compare
BWI76_RS01765 +0.6 2.5 hypothetical protein compare
BWI76_RS01715 +0.6 2.2 shikimate 5-dehydrogenase compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL across organisms