Experiment set14IT061 for Klebsiella michiganensis M5al

Compare to:

LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS17975 -5.3 -3.1 tail-specific protease compare
BWI76_RS17980 -5.1 -3.1 RNA chaperone ProQ compare
BWI76_RS16965 -4.8 -1.7 murein lipoprotein compare
BWI76_RS09615 -4.8 -2.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS01095 -4.7 -2.1 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS21350 -4.7 -4.1 anti-RNA polymerase sigma factor SigE compare
BWI76_RS14935 -4.6 -1.2 NIPSNAP family containing protein compare
BWI76_RS13545 -4.6 -1.2 N-acetyltransferase compare
BWI76_RS21310 -4.5 -1.1 DNA repair protein RecO compare
BWI76_RS26455 -4.5 -1.6 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS05260 -4.4 -1.1 chaperone compare
BWI76_RS22090 -4.4 -1.9 transcriptional regulator compare
BWI76_RS26665 -4.4 -2.4 DNA-binding response regulator compare
BWI76_RS16230 -4.3 -1.5 dihydromonapterin reductase compare
BWI76_RS02745 -4.2 -1.1 hypothetical protein compare
BWI76_RS09335 -4.2 -1.1 baseplate assembly protein W compare
BWI76_RS07820 -4.2 -1.5 S-methyl-5-thioribose kinase compare
BWI76_RS23265 -4.1 -1.5 hypothetical protein compare
BWI76_RS18770 -4.1 -1.0 DNA gyrase inhibitor compare
BWI76_RS08520 -4.1 -1.8 colicin transporter TolQ compare
BWI76_RS21100 -4.1 -1.5 nucleoside-diphosphate kinase compare
BWI76_RS01135 -4.0 -4.0 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS09760 -3.9 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS23970 -3.9 -1.9 mechanosensitive ion channel protein MscS compare
BWI76_RS08040 -3.8 -1.3 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS12070 -3.8 -1.0 hypothetical protein compare
BWI76_RS25065 -3.8 -2.8 polyribonucleotide nucleotidyltransferase compare
BWI76_RS11155 -3.8 -1.9 penicillin-binding protein activator LpoB compare
BWI76_RS13755 -3.7 -1.3 hypothetical protein compare
BWI76_RS01080 -3.6 -8.1 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS08385 -3.6 -1.9 citrate (Si)-synthase compare
BWI76_RS25060 -3.4 -4.7 lipoprotein NlpI compare
BWI76_RS26460 -3.3 -3.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS13560 -3.3 -0.8 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS20360 -3.2 -0.8 cell division protein DedD compare
BWI76_RS09305 -3.2 -2.4 hypothetical protein compare
BWI76_RS05120 -3.2 -8.4 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS01110 -3.2 -5.6 TDP-fucosamine acetyltransferase compare
BWI76_RS11580 -3.0 -1.9 L-asparaginase 1 compare
BWI76_RS08525 -3.0 -1.2 colicin transporter compare
BWI76_RS21075 -3.0 -1.3 membrane protein compare
BWI76_RS16315 -2.9 -1.0 SirA-like protein compare
BWI76_RS07465 -2.9 -1.0 TetR family transcriptional regulator compare
BWI76_RS14325 -2.9 -4.2 maturase compare
BWI76_RS12495 -2.9 -1.0 2-Cys peroxiredoxin compare
BWI76_RS21660 -2.9 -1.2 antirestriction protein compare
BWI76_RS16485 -2.9 -1.0 ribonuclease T compare
BWI76_RS24075 -2.8 -3.3 glutathione synthase compare
BWI76_RS01350 -2.8 -0.7 NAD(P)H-flavin reductase compare
BWI76_RS06535 -2.8 -1.9 endopeptidase La compare
BWI76_RS25280 -2.7 -1.0 RNase adaptor protein RapZ compare
BWI76_RS20490 -2.7 -1.9 hypothetical protein compare
BWI76_RS08530 -2.7 -1.3 protein TolA compare
BWI76_RS03660 -2.7 -1.8 hypothetical protein compare
BWI76_RS00755 -2.7 -3.4 ATP-dependent protease subunit HslV compare
BWI76_RS18815 -2.7 -1.6 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS02775 -2.6 -5.3 outer membrane protein assembly factor compare
BWI76_RS08210 -2.6 -0.9 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS02780 -2.6 -9.5 translocation and assembly module TamB compare
BWI76_RS08535 -2.6 -1.1 translocation protein TolB compare
BWI76_RS04160 -2.6 -2.5 phosphoserine phosphatase compare
BWI76_RS09645 -2.6 -0.6 thioredoxin-disulfide reductase compare
BWI76_RS21580 -2.6 -1.1 SsrA-binding protein compare
BWI76_RS20380 -2.6 -0.6 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS01090 -2.6 -4.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS26620 -2.5 -0.6 Fe-S biogenesis protein NfuA compare
BWI76_RS12270 -2.5 -2.1 hypothetical protein compare
BWI76_RS26670 -2.5 -6.4 two-component sensor histidine kinase compare
BWI76_RS20155 -2.4 -1.4 NADH-quinone oxidoreductase subunit I compare
BWI76_RS05350 -2.4 -8.4 Rcs stress response system protein RcsF compare
BWI76_RS11980 -2.4 -1.4 DeoR family transcriptional regulator compare
BWI76_RS22755 -2.4 -3.8 phosphoadenosine phosphosulfate reductase compare
BWI76_RS24740 -2.4 -2.5 GntR family transcriptional regulator compare
BWI76_RS21370 -2.4 -0.8 ATP-dependent RNA helicase SrmB compare
BWI76_RS05570 -2.3 -0.8 hypothetical protein compare
BWI76_RS09970 -2.3 -0.8 porin OmpA compare
BWI76_RS26440 -2.3 -1.0 hypothetical protein compare
BWI76_RS19920 -2.3 -7.5 hybrid sensor histidine kinase/response regulator compare
BWI76_RS12170 -2.3 -1.5 hypothetical protein compare
BWI76_RS04270 -2.3 -2.8 transaldolase compare
BWI76_RS24080 -2.3 -1.8 DUF179 domain-containing protein compare
BWI76_RS00240 -2.2 -1.1 FMN-binding protein MioC compare
BWI76_RS10575 -2.2 -0.8 polar amino acid ABC transporter permease compare
BWI76_RS08020 -2.2 -4.6 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS21235 -2.1 -0.7 hypothetical protein compare
BWI76_RS21345 -2.1 -2.0 sigma-E factor regulatory protein RseB compare
BWI76_RS11190 -2.1 -1.4 putative TetR/AcrR family transcriptional regulatory protein compare
BWI76_RS07785 -2.1 -1.2 transcriptional regulator compare
BWI76_RS04645 -2.1 -2.6 3-dehydroquinase compare
BWI76_RS04305 -2.1 -0.9 molecular chaperone DnaJ compare
BWI76_RS19905 -2.1 -3.2 OmpK36 porin compare
BWI76_RS24850 -2.1 -5.0 DeoR family transcriptional regulator compare
BWI76_RS05015 -2.1 -1.5 transcriptional regulator compare
BWI76_RS20730 -2.1 -1.3 hypothetical protein compare
BWI76_RS15350 -2.1 -0.9 hypothetical protein compare
BWI76_RS23830 -2.0 -3.7 hypothetical protein compare
BWI76_RS19910 -2.0 -8.7 phosphotransferase RcsD compare
BWI76_RS25425 -2.0 -0.7 arginine repressor compare
BWI76_RS05070 -2.0 -2.2 type II secretion system protein GspH compare
BWI76_RS19840 -2.0 -0.5 hypothetical protein compare
BWI76_RS10835 -2.0 -1.0 hypothetical protein compare
BWI76_RS27820 -2.0 -0.7 ilvB operon leader peptide IvbL compare
BWI76_RS01325 -2.0 -2.1 twin-arginine translocase subunit TatB compare
BWI76_RS24605 -2.0 -5.1 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS21255 -1.9 -3.0 hypothetical protein compare
BWI76_RS22955 -1.9 -3.0 transcriptional regulator GcvA compare
BWI76_RS00875 -1.9 -3.9 DNA-binding transcriptional regulator FabR compare
BWI76_RS23885 -1.9 -0.7 2-octaprenylphenol hydroxylase compare
BWI76_RS16815 -1.9 -1.6 periplasmic binding protein compare
BWI76_RS01870 -1.9 -1.9 diacylglycerol kinase compare
BWI76_RS16220 -1.9 -1.3 hypothetical protein compare
BWI76_RS10955 -1.9 -1.3 hypothetical protein compare
BWI76_RS09190 -1.9 -1.3 hypothetical protein compare
BWI76_RS08500 -1.9 -1.9 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS02530 -1.8 -1.0 tRNA dimethylallyltransferase compare
BWI76_RS00345 -1.8 -3.2 protein disulfide oxidoreductase DsbA compare
BWI76_RS12185 -1.8 -2.8 hypothetical protein compare
BWI76_RS00180 -1.8 -0.6 F0F1 ATP synthase subunit epsilon compare
BWI76_RS23365 -1.8 -3.1 LysR family transcriptional regulator compare
BWI76_RS21070 -1.8 -1.1 outer membrane protein assembly factor BamB compare
BWI76_RS15060 -1.8 -2.5 MarR family transcriptional regulator compare
BWI76_RS01125 -1.8 -3.2 4-alpha-L-fucosyltransferase compare
BWI76_RS24750 -1.7 -4.7 membrane protein compare
BWI76_RS06680 -1.7 -0.8 hypothetical protein compare
BWI76_RS09315 -1.7 -1.6 hypothetical protein compare
BWI76_RS13920 -1.7 -3.8 magnesium-translocating P-type ATPase compare
BWI76_RS23360 -1.7 -1.1 diaminopimelate decarboxylase compare
BWI76_RS14505 -1.7 -1.6 salicylate synthase Irp9 compare
BWI76_RS12125 -1.7 -2.5 hypothetical protein compare
BWI76_RS24765 -1.7 -2.6 membrane protein compare
BWI76_RS02855 -1.7 -2.5 cytochrome B562 compare
BWI76_RS07865 -1.7 -2.2 methylthioribulose 1-phosphate dehydratase compare
BWI76_RS01630 -1.7 -0.8 16S ribosomal RNA compare
BWI76_RS11300 -1.6 -0.7 cupin compare
BWI76_RS07740 -1.6 -0.7 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS05555 -1.6 -2.0 Crl family RNA polymerase assembly factor compare
BWI76_RS19870 -1.6 -1.8 malate:quinone oxidoreductase compare
BWI76_RS19010 -1.6 -1.9 polysaccharide pyruvyl transferase yvff compare
BWI76_RS01220 -1.6 -3.8 DNA-dependent helicase II compare
BWI76_RS10935 -1.6 -3.3 glucan biosynthesis glucosyltransferase H compare
BWI76_RS01115 -1.6 -1.3 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS16035 -1.6 -2.3 biotin-independent malonate decarboxylase subunit beta compare
BWI76_RS06520 -1.6 -2.1 trigger factor compare
BWI76_RS18000 -1.6 -3.2 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
BWI76_RS01385 -1.6 -1.7 potassium transporter compare
BWI76_RS15110 -1.6 -3.3 putative excinuclease ABC subunit A compare
BWI76_RS14065 -1.6 -1.3 hypothetical protein compare
BWI76_RS15115 -1.6 -1.1 MFS transporter compare
BWI76_RS24400 -1.6 -1.5 outer membrane channel protein TolC compare
BWI76_RS24770 -1.6 -1.8 hypothetical protein compare
BWI76_RS09860 -1.6 -2.4 hypothetical protein compare
BWI76_RS10060 -1.6 -1.2 acylphosphatase compare
BWI76_RS10930 -1.6 -4.8 glucan biosynthesis protein G compare
BWI76_RS19055 -1.6 -4.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BWI76_RS04100 -1.6 -2.2 peptide chain release factor 3 compare
BWI76_RS23020 -1.5 -1.4 cobalamin biosynthesis protein CbiQ compare
BWI76_RS06295 -1.5 -2.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BWI76_RS03225 -1.5 -3.8 transcriptional regulator compare
BWI76_RS21675 -1.5 -0.5 hypothetical protein compare
BWI76_RS26390 -1.5 -4.3 cell division protein FtsX compare
BWI76_RS15760 -1.5 -1.3 hypothetical protein compare
BWI76_RS10990 -1.5 -2.2 dihydroorotase compare
BWI76_RS26095 -1.5 -0.5 shikimate kinase compare
BWI76_RS24900 -1.5 -0.7 DeoR family transcriptional regulator compare
BWI76_RS18335 -1.5 -4.7 DNA-binding response regulator compare
BWI76_RS21460 -1.5 -0.8 translation inhibitor protein RaiA compare
BWI76_RS17530 -1.5 -1.9 hypothetical protein compare
BWI76_RS24385 -1.5 -4.1 phosphodiesterase compare
BWI76_RS21450 -1.5 -1.4 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS12400 -1.5 -4.1 TetR family transcriptional regulator compare
BWI76_RS16355 -1.5 -1.5 electron transport complex subunit A compare
BWI76_RS14770 -1.5 -0.8 PTS IIA 2 domain protein compare
BWI76_RS23480 -1.5 -9.8 EAL domain-containing protein compare
BWI76_RS02550 -1.5 -3.2 protease modulator HflC compare
BWI76_RS12470 -1.5 -1.3 thiosulfate sulfurtransferase PspE compare
BWI76_RS27440 -1.5 -1.0 DNA helicase RecG compare
BWI76_RS19035 -1.5 -5.2 dTDP-rhamnosyl transferase compare
BWI76_RS27475 -1.4 -4.6 regulatory protein GntR family protein compare
BWI76_RS18710 -1.4 -7.9 GGDEF-domain containing protein compare
BWI76_RS08395 -1.4 -1.1 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS00095 -1.4 -1.2 DNA-binding transcriptional regulator compare
BWI76_RS17860 -1.4 -1.2 YoaH family protein compare
BWI76_RS03920 -1.4 -1.6 N-acetyltransferase compare
BWI76_RS26470 -1.4 -2.2 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS18715 -1.4 -4.8 hypothetical protein compare
BWI76_RS07120 -1.4 -4.7 LacI family transcriptional regulator compare
BWI76_RS05915 -1.4 -2.0 helix-turn-helix transcriptional regulator compare
BWI76_RS25335 -1.4 -1.0 stringent starvation protein A compare
BWI76_RS12280 -1.4 -2.6 hypothetical protein compare
BWI76_RS21795 -1.4 -2.1 EAL domain-containing protein compare
BWI76_RS13915 -1.4 -3.6 magnesium transport protein MgtC compare
BWI76_RS19770 -1.4 -1.1 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS05785 -1.4 -1.9 CI repressor compare
BWI76_RS05450 -1.4 -0.5 ribonuclease HI compare
BWI76_RS03295 -1.4 -0.9 transposase compare
BWI76_RS17720 -1.4 -0.3 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS13275 -1.4 -1.1 hypothetical protein compare
BWI76_RS25300 -1.4 -1.4 hybrid sensor histidine kinase/response regulator compare
BWI76_RS01105 -1.3 -2.5 glucose-1-phosphate thymidylyltransferase compare
BWI76_RS12450 -1.3 -1.4 phage shock protein PspA compare


Specific Phenotypes

For 1 genes in this experiment

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL across organisms