Experiment set14IT060 for Klebsiella michiganensis M5al

Compare to:

LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS01135 -5.3 -3.7 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS21350 -5.1 -4.7 anti-RNA polymerase sigma factor SigE compare
BWI76_RS01115 -4.5 -2.3 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS26460 -4.4 -3.0 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS26455 -4.4 -1.9 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS14770 -4.1 -1.3 PTS IIA 2 domain protein compare
BWI76_RS23265 -4.0 -1.7 hypothetical protein compare
BWI76_RS08520 -4.0 -2.1 colicin transporter TolQ compare
BWI76_RS25280 -4.0 -1.2 RNase adaptor protein RapZ compare
BWI76_RS09625 -3.8 -1.2 hypothetical protein compare
BWI76_RS09760 -3.8 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS04525 -3.6 -1.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS21450 -3.6 -2.1 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS21070 -3.4 -1.8 outer membrane protein assembly factor BamB compare
BWI76_RS05015 -3.4 -2.1 transcriptional regulator compare
BWI76_RS02775 -3.4 -5.8 outer membrane protein assembly factor compare
BWI76_RS01095 -3.4 -2.1 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS08530 -3.4 -1.5 protein TolA compare
BWI76_RS21235 -3.4 -1.0 hypothetical protein compare
BWI76_RS18815 -3.3 -2.7 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS25920 -3.3 -1.7 peptidylprolyl isomerase compare
BWI76_RS25335 -3.3 -1.7 stringent starvation protein A compare
BWI76_RS21310 -3.1 -1.3 DNA repair protein RecO compare
BWI76_RS08525 -3.0 -1.4 colicin transporter compare
BWI76_RS00875 -2.9 -4.2 DNA-binding transcriptional regulator FabR compare
BWI76_RS16425 -2.9 -3.7 hypothetical protein compare
BWI76_RS01870 -2.9 -3.7 diacylglycerol kinase compare
BWI76_RS07465 -2.9 -1.2 TetR family transcriptional regulator compare
BWI76_RS21075 -2.9 -1.5 membrane protein compare
BWI76_RS01385 -2.8 -1.9 potassium transporter compare
BWI76_RS02745 -2.8 -1.2 hypothetical protein compare
BWI76_RS26665 -2.8 -3.6 DNA-binding response regulator compare
BWI76_RS00720 -2.8 -1.6 DNA-binding response regulator compare
BWI76_RS09335 -2.7 -1.2 baseplate assembly protein W compare
BWI76_RS21345 -2.7 -2.4 sigma-E factor regulatory protein RseB compare
BWI76_RS08385 -2.7 -3.2 citrate (Si)-synthase compare
BWI76_RS06535 -2.7 -1.8 endopeptidase La compare
BWI76_RS11520 -2.7 -1.1 hypothetical protein compare
BWI76_RS15825 -2.7 -1.1 hypothetical protein compare
BWI76_RS01350 -2.7 -0.8 NAD(P)H-flavin reductase compare
BWI76_RS01080 -2.6 -8.3 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS02610 -2.6 -5.2 transcriptional regulator compare
BWI76_RS16965 -2.6 -2.5 murein lipoprotein compare
BWI76_RS08210 -2.6 -1.1 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS01800 -2.6 -1.8 glucose-6-phosphate isomerase compare
BWI76_RS08535 -2.6 -1.3 translocation protein TolB compare
BWI76_RS09645 -2.5 -0.7 thioredoxin-disulfide reductase compare
BWI76_RS21580 -2.5 -1.3 SsrA-binding protein compare
BWI76_RS26620 -2.5 -0.7 Fe-S biogenesis protein NfuA compare
BWI76_RS22940 -2.4 -2.7 DNA-binding transcriptional activator FucR compare
BWI76_RS19010 -2.4 -2.3 polysaccharide pyruvyl transferase yvff compare
BWI76_RS13820 -2.3 -1.5 hypothetical protein compare
BWI76_RS05260 -2.3 -1.2 chaperone compare
BWI76_RS12390 -2.3 -2.0 antibiotic biosynthesis monooxygenase compare
BWI76_RS17975 -2.3 -4.0 tail-specific protease compare
BWI76_RS09970 -2.2 -0.9 porin OmpA compare
BWI76_RS17980 -2.2 -3.4 RNA chaperone ProQ compare
BWI76_RS01125 -2.1 -4.6 4-alpha-L-fucosyltransferase compare
BWI76_RS00240 -2.1 -1.3 FMN-binding protein MioC compare
BWI76_RS04705 -2.1 -4.1 DNA-binding transcriptional regulator FruR compare
BWI76_RS07820 -2.1 -1.9 S-methyl-5-thioribose kinase compare
BWI76_RS14065 -2.1 -1.2 hypothetical protein compare
BWI76_RS05120 -2.0 -5.1 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS12495 -2.0 -1.0 2-Cys peroxiredoxin compare
BWI76_RS09110 -2.0 -2.1 glutathione ABC transporter permease GsiD compare
BWI76_RS24740 -1.9 -2.4 GntR family transcriptional regulator compare
BWI76_RS17675 -1.9 -1.6 hypothetical protein compare
BWI76_RS26470 -1.9 -3.4 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS21810 -1.9 -1.1 universal stress protein compare
BWI76_RS25060 -1.9 -4.5 lipoprotein NlpI compare
BWI76_RS09730 -1.9 -0.8 pyruvate formate lyase 1-activating protein compare
BWI76_RS16275 -1.9 -2.7 fumarate hydratase FumA compare
BWI76_RS02530 -1.8 -1.2 tRNA dimethylallyltransferase compare
BWI76_RS09190 -1.8 -1.2 hypothetical protein compare
BWI76_RS24605 -1.8 -4.5 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS22690 -1.8 -1.6 adenylyl-sulfate kinase compare
BWI76_RS14320 -1.8 -1.5 hypothetical protein compare
BWI76_RS13560 -1.8 -0.7 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS05075 -1.8 -0.7 type II secretion system protein GspG compare
BWI76_RS04645 -1.8 -2.6 3-dehydroquinase compare
BWI76_RS01110 -1.7 -3.3 TDP-fucosamine acetyltransferase compare
BWI76_RS27875 -1.7 -1.3 membrane protein compare
BWI76_RS11235 -1.7 -1.3 hypothetical protein compare
BWI76_RS15605 -1.7 -2.2 hypothetical protein compare
BWI76_RS21505 -1.7 -1.1 hypothetical protein compare
BWI76_RS00180 -1.7 -0.7 F0F1 ATP synthase subunit epsilon compare
BWI76_RS26730 -1.7 -4.9 inner membrane protein YhjD compare
BWI76_RS24580 -1.7 -3.4 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS22755 -1.6 -3.1 phosphoadenosine phosphosulfate reductase compare
BWI76_RS02780 -1.6 -7.7 translocation and assembly module TamB compare
BWI76_RS12265 -1.6 -4.1 hypothetical protein compare
BWI76_RS15290 -1.6 -1.1 transcriptional regulator compare
BWI76_RS09315 -1.6 -1.7 hypothetical protein compare
BWI76_RS15110 -1.6 -2.2 putative excinuclease ABC subunit A compare
BWI76_RS24595 -1.6 -2.7 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS26670 -1.6 -4.8 two-component sensor histidine kinase compare
BWI76_RS05915 -1.6 -2.5 helix-turn-helix transcriptional regulator compare
BWI76_RS26390 -1.6 -5.0 cell division protein FtsX compare
BWI76_RS12070 -1.6 -0.8 hypothetical protein compare
BWI76_RS16480 -1.6 -1.1 lactoylglutathione lyase compare
BWI76_RS23125 -1.6 -2.1 propanediol dehydratase small subunit compare
BWI76_RS08720 -1.6 -1.0 imidazolonepropionase compare
BWI76_RS27940 -1.5 -1.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BWI76_RS09825 -1.5 -2.5 envelope biogenesis factor ElyC compare
BWI76_RS01090 -1.5 -4.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS25070 -1.5 -1.1 hypothetical protein compare
BWI76_RS08040 -1.5 -1.5 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS23365 -1.5 -2.9 LysR family transcriptional regulator compare
BWI76_RS05235 -1.5 -0.8 hypothetical protein compare
BWI76_RS26395 -1.5 -3.3 cell division protein FtsE compare
BWI76_RS18695 -1.5 -3.5 GntR family transcriptional regulator compare
BWI76_RS15115 -1.5 -1.0 MFS transporter compare
BWI76_RS06635 -1.5 -1.9 methylated-DNA--protein-cysteine methyltransferase compare
BWI76_RS26095 -1.5 -0.6 shikimate kinase compare
BWI76_RS06520 -1.5 -2.2 trigger factor compare
BWI76_RS05570 -1.5 -0.7 hypothetical protein compare
BWI76_RS14105 -1.5 -3.4 NADH:ubiquinone reductase (Na(+)-transporting) subunit E compare
BWI76_RS15530 -1.5 -1.7 hypothetical protein compare
BWI76_RS24080 -1.5 -1.4 DUF179 domain-containing protein compare
BWI76_RS19770 -1.5 -1.3 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS03225 -1.4 -4.7 transcriptional regulator compare
BWI76_RS11125 -1.4 -1.4 metal-dependent hydrolase compare
BWI76_RS02680 -1.4 -2.3 EamA family transporter compare
BWI76_RS21675 -1.4 -0.6 hypothetical protein compare
BWI76_RS27440 -1.4 -1.0 DNA helicase RecG compare
BWI76_RS04305 -1.4 -0.8 molecular chaperone DnaJ compare
BWI76_RS02815 -1.4 -1.1 fructose-bisphosphatase class I compare
BWI76_RS12090 -1.4 -1.1 HNH endonuclease compare
BWI76_RS21780 -1.4 -2.1 S-(hydroxymethyl)glutathione synthase compare
BWI76_RS13915 -1.4 -4.4 magnesium transport protein MgtC compare
BWI76_RS22760 -1.4 -3.3 sulfite reductase subunit beta compare
BWI76_RS15765 -1.4 -4.0 hypothetical protein compare
BWI76_RS27425 -1.4 -0.9 DNA-directed RNA polymerase subunit omega compare
BWI76_RS24075 -1.4 -2.3 glutathione synthase compare
BWI76_RS02855 -1.4 -2.5 cytochrome B562 compare
BWI76_RS02340 -1.4 -2.6 membrane protein FxsA compare
BWI76_RS14005 -1.4 -1.1 TetR family transcriptional regulator compare
BWI76_RS13545 -1.4 -0.9 N-acetyltransferase compare
BWI76_RS24275 -1.4 -1.6 biopolymer transport protein ExbD compare
BWI76_RS12345 -1.4 -2.3 nitrite transporter compare
BWI76_RS01065 -1.3 -2.4 ATP-dependent RNA helicase RhlB compare
BWI76_RS12335 -1.3 -3.8 hypothetical protein compare
BWI76_RS12340 -1.3 -2.1 molecular chaperone Tir compare
BWI76_RS00345 -1.3 -2.6 protein disulfide oxidoreductase DsbA compare
BWI76_RS12745 -1.3 -2.9 putative prophage membrane protein compare
BWI76_RS00480 -1.3 -2.3 hypothetical protein compare
BWI76_RS05450 -1.3 -0.5 ribonuclease HI compare
BWI76_RS20160 -1.3 -1.8 NADH-quinone oxidoreductase subunit H compare
BWI76_RS18165 -1.3 -0.9 NUDIX pyrophosphatase compare
BWI76_RS20880 -1.3 -1.7 esterase compare
BWI76_RS21685 -1.3 -0.7 hypothetical protein compare
BWI76_RS12895 -1.3 -2.6 hypothetical protein compare
BWI76_RS22805 -1.3 -4.6 GTP diphosphokinase compare
BWI76_RS17720 -1.3 -0.3 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS12230 -1.3 -4.3 hypothetical protein compare
BWI76_RS08275 -1.3 -1.1 LexA regulated protein compare
BWI76_RS09150 -1.3 -1.6 DNA-binding transcriptional repressor DeoR compare
BWI76_RS15665 -1.3 -2.6 hypothetical protein compare
BWI76_RS12750 -1.3 -2.6 hypothetical protein compare
BWI76_RS08395 -1.3 -1.2 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS19730 -1.3 -1.6 1-phosphofructokinase compare
BWI76_RS09735 -1.2 -2.3 formate acetyltransferase compare
BWI76_RS01190 -1.2 -1.0 iron donor protein CyaY compare
BWI76_RS06530 -1.2 -2.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS23490 -1.2 -2.7 fimbrial protein compare
BWI76_RS08500 -1.2 -1.6 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS12470 -1.2 -1.3 thiosulfate sulfurtransferase PspE compare
BWI76_RS10910 -1.2 -2.4 hypothetical protein compare
BWI76_RS12285 -1.2 -2.0 hypothetical protein compare
BWI76_RS18415 -1.2 -1.4 very short patch repair endonuclease compare
BWI76_RS05880 -1.2 -1.2 AraC-type DNA-binding domain-containing protein compare
BWI76_RS00715 -1.2 -0.8 two-component sensor histidine kinase compare
BWI76_RS23655 -1.2 -2.5 DeoR family transcriptional regulator compare
BWI76_RS18875 -1.2 -4.1 nitrogen fixation protein NifM compare
BWI76_RS20640 -1.2 -2.6 cysteine synthase A compare
BWI76_RS24600 -1.2 -1.3 dihydroxyacetone kinase compare
BWI76_RS15845 -1.2 -0.7 hypothetical protein compare
BWI76_RS17300 -1.1 -0.8 tRNA-Tyr compare
BWI76_RS12450 -1.1 -1.7 phage shock protein PspA compare
BWI76_RS01185 -1.1 -0.8 adenylate cyclase compare
BWI76_RS20440 -1.1 -1.2 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS07115 -1.1 -2.6 hypothetical protein compare
BWI76_RS20380 -1.1 -0.4 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS12545 -1.1 -1.1 hypothetical protein compare
BWI76_RS26750 -1.1 -2.3 PfkB domain-containing protein compare
BWI76_RS11155 -1.1 -1.6 penicillin-binding protein activator LpoB compare
BWI76_RS00430 -1.1 -2.7 GNAT family N-acetyltransferase compare
BWI76_RS13330 -1.1 -0.9 tellurite resistance methyltransferase TehB compare
BWI76_RS25065 -1.1 -1.8 polyribonucleotide nucleotidyltransferase compare
BWI76_RS03345 -1.1 -5.1 prophage P4 integrase compare
BWI76_RS11600 -1.1 -1.5 selenide, water dikinase SelD compare
BWI76_RS20360 -1.1 -0.5 cell division protein DedD compare
BWI76_RS14505 -1.1 -1.3 salicylate synthase Irp9 compare
BWI76_RS06295 -1.1 -3.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BWI76_RS04715 -1.1 -0.9 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS20150 -1.1 -1.3 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS23360 -1.1 -1.2 diaminopimelate decarboxylase compare
BWI76_RS26775 -1.1 -2.0 endo-1,4-D-glucanase compare
BWI76_RS12225 -1.1 -1.4 hypothetical protein compare
BWI76_RS26075 -1.1 -0.7 DNA adenine methylase compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL across organisms