Experiment set14IT060 for Klebsiella michiganensis M5al

Compare to:

LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS15975 +2.1 1.9 hypothetical protein compare
BWI76_RS00025 +1.8 2.1 hypothetical protein compare
BWI76_RS15215 +1.7 1.5 N-acetyltransferase compare
BWI76_RS07725 +1.6 2.0 iron-enterobactin transporter permease compare
BWI76_RS11810 +1.6 2.5 outer membrane protein OmpW compare
BWI76_RS10575 +1.6 1.4 polar amino acid ABC transporter permease compare
BWI76_RS04095 +1.4 4.2 dUMP phosphatase compare
BWI76_RS08260 +1.4 3.3 LysR family transcriptional regulator compare
BWI76_RS19375 +1.3 1.4 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS17525 +1.3 0.8 XshC-Cox1-family protein compare
BWI76_RS03045 +1.3 2.2 hypothetical protein compare
BWI76_RS18360 +1.3 2.6 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS11980 +1.3 1.2 DeoR family transcriptional regulator compare
BWI76_RS23885 +1.3 1.2 2-octaprenylphenol hydroxylase compare
BWI76_RS07760 +1.2 3.2 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
BWI76_RS16655 +1.2 2.6 CatA-like O-acetyltransferase compare
BWI76_RS01995 +1.2 1.9 AraC family transcriptional regulator compare
BWI76_RS14775 +1.2 1.8 creatinine amidohydrolase compare
BWI76_RS23520 +1.2 1.7 hypothetical protein compare
BWI76_RS23915 +1.2 2.0 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS20795 +1.1 1.6 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS10055 +1.1 1.4 AraC family transcriptional regulator compare
BWI76_RS04805 +1.1 3.4 8-oxo-dGTP diphosphatase compare
BWI76_RS13215 +1.1 1.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS18075 +1.1 1.5 oligopeptidase B compare
BWI76_RS11815 +1.0 1.2 hypothetical protein compare
BWI76_RS24070 +1.0 2.4 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
BWI76_RS20800 +1.0 1.8 carboxysome shell protein compare
BWI76_RS19860 +1.0 2.8 hypothetical protein compare
BWI76_RS05465 +1.0 1.2 amidohydrolase compare
BWI76_RS03295 +1.0 0.9 transposase compare
BWI76_RS26005 +1.0 2.4 glutamine amidotransferase compare
BWI76_RS21945 +1.0 3.1 LysR family transcriptional regulator compare
BWI76_RS06435 +1.0 2.3 MFS transporter compare
BWI76_RS13415 +1.0 1.6 spermidine/putrescine ABC transporter permease compare
BWI76_RS11820 +1.0 1.4 short-chain dehydrogenase/reductase SDR compare
BWI76_RS01585 +0.9 4.4 transcriptional regulator compare
BWI76_RS08835 +0.9 2.6 molybdopterin guanine dinucleotide biosynthesis protein MoaE compare
BWI76_RS07165 +0.9 2.4 hypothetical protein compare
BWI76_RS24745 +0.9 3.3 membrane protein compare
BWI76_RS18385 +0.9 1.4 hypothetical protein compare
BWI76_RS19310 +0.9 2.4 ABC transporter permease compare
BWI76_RS24810 +0.9 3.0 hypothetical protein compare
BWI76_RS03040 +0.9 2.5 leucyl aminopeptidase compare
BWI76_RS07920 +0.9 2.3 methionine aminotransferase compare
BWI76_RS10755 +0.9 1.3 pyrimidine utilization flavin reductase protein F compare
BWI76_RS14980 +0.9 0.8 hypothetical protein compare
BWI76_RS23050 +0.9 1.8 cobalt-precorrin-3B C(17)-methyltransferase compare
BWI76_RS22085 +0.9 1.7 L-valine transporter subunit YgaH compare
BWI76_RS11790 +0.9 2.0 acyl-CoA thioesterase compare
BWI76_RS01240 +0.9 4.2 phospholipase A compare
BWI76_RS26405 +0.9 1.7 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS14925 +0.9 2.2 ABC transporter substrate-binding protein compare
BWI76_RS20995 +0.9 3.1 RNA degradosome polyphosphate kinase compare
BWI76_RS03105 +0.9 0.9 myo-inosose-2 dehydratase compare
BWI76_RS02225 +0.9 1.7 phosphonate C-P lyase system protein PhnG compare
BWI76_RS15900 +0.9 1.4 hypothetical protein compare
BWI76_RS18800 +0.9 3.5 transcriptional regulator compare
BWI76_RS15440 +0.9 2.6 hypothetical protein compare
BWI76_RS16095 +0.9 2.1 thiamine biosynthesis protein ApbE compare
BWI76_RS22975 +0.9 2.1 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
BWI76_RS04600 +0.9 3.2 inner membrane protein compare
BWI76_RS06740 +0.9 1.6 50S ribosomal protein L36 compare
BWI76_RS20765 +0.9 1.8 ethanolamine ammonia lyase large subunit compare
BWI76_RS17190 +0.9 0.9 TonB system transport protein TonB compare
BWI76_RS07730 +0.9 0.5 iron-enterobactin transporter membrane protein compare
BWI76_RS08585 +0.9 1.7 nicotinamide riboside transporter PnuC compare
BWI76_RS02185 +0.9 1.5 phosphonate metabolism protein PhnP compare
BWI76_RS08515 +0.8 1.6 acyl-CoA thioesterase YbgC compare
BWI76_RS06785 +0.8 2.0 DNA-binding transcriptional repressor AcrR compare
BWI76_RS23120 +0.8 2.0 propanediol dehydratase medium subunit compare
BWI76_RS08825 +0.8 4.0 cyclic pyranopterin monophosphate synthase MoaC compare
BWI76_RS13840 +0.8 1.9 MBL fold metallo-hydrolase compare
BWI76_RS20965 +0.8 3.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS00970 +0.8 2.2 branched chain amino acid aminotransferase compare
BWI76_RS20155 +0.8 1.0 NADH-quinone oxidoreductase subunit I compare
BWI76_RS23005 +0.8 1.7 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS20750 +0.8 0.5 carboxysome structural protein EutK compare
BWI76_RS17400 +0.8 0.9 transporter compare
BWI76_RS10725 +0.8 2.4 hypothetical protein compare
BWI76_RS04840 +0.8 1.9 prepilin peptidase-dependent pilin compare
BWI76_RS02800 +0.8 1.9 ABC transporter compare
BWI76_RS20460 +0.8 1.3 acetyl-CoA C-acyltransferase FadI compare
BWI76_RS15890 +0.8 2.4 Zn-dependent oxidoreductase compare
BWI76_RS02725 +0.8 0.8 HxlR family transcriptional regulator compare
BWI76_RS17290 +0.8 1.4 formyltetrahydrofolate deformylase compare
BWI76_RS06335 +0.8 1.6 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS06880 +0.8 2.8 biopolymer transport protein ExbD/TolR compare
BWI76_RS10875 +0.8 1.9 quercetin 2,3-dioxygenase compare
BWI76_RS14610 +0.8 2.6 putative hydrolase compare
BWI76_RS08645 +0.8 2.2 molybdate ABC transporter substrate-binding protein compare
BWI76_RS11640 +0.8 2.3 ABC transporter membrane protein compare
BWI76_RS18455 +0.8 0.7 tRNA-Ser compare
BWI76_RS09520 +0.8 1.4 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS24035 +0.8 1.9 hypothetical protein compare
BWI76_RS16645 +0.8 1.6 DeoR family transcriptional regulator compare
BWI76_RS18175 +0.8 2.2 hydrolase compare
BWI76_RS13805 +0.8 2.7 inorganic diphosphatase compare
BWI76_RS15260 +0.8 0.9 hypothetical protein compare
BWI76_RS16220 +0.8 1.2 hypothetical protein compare
BWI76_RS20970 +0.8 1.2 phosphoribosylglycinamide formyltransferase compare
BWI76_RS05870 +0.8 1.6 ABC transporter compare
BWI76_RS11515 +0.8 0.8 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS04955 +0.8 1.2 hypoxanthine phosphoribosyltransferase compare
BWI76_RS01015 +0.8 1.6 nicotinamide riboside transporter PnuC compare
BWI76_RS25910 +0.8 1.0 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS03610 +0.8 1.3 hypothetical protein compare
BWI76_RS13640 +0.8 3.4 binding-protein-dependent transport system inner membrane protein compare
BWI76_RS16900 +0.8 1.1 4-hydroxy-2-oxovalerate aldolase compare
BWI76_RS13445 +0.8 0.9 alpha/beta hydrolase compare
BWI76_RS10500 +0.8 1.6 flavoprotein monooxygenase compare
BWI76_RS16870 +0.8 3.0 LysR family transcriptional regulator compare
BWI76_RS17045 +0.8 1.1 hypothetical protein compare
BWI76_RS16055 +0.8 3.3 malonate decarboxylase subunit epsilon compare
BWI76_RS09540 +0.8 2.0 hypothetical protein compare
BWI76_RS03515 +0.8 2.2 hypothetical protein compare
BWI76_RS11900 +0.8 0.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS20675 +0.8 2.1 GMP synthase compare
BWI76_RS13990 +0.8 4.2 allophanate hydrolase compare
BWI76_RS13975 +0.8 0.9 urea carboxylase compare
BWI76_RS27395 +0.8 2.5 hypothetical protein compare
BWI76_RS06325 +0.8 1.0 hypothetical protein compare
BWI76_RS08765 +0.7 1.2 8-amino-7-oxononanoate synthase compare
BWI76_RS18765 +0.7 1.1 FUSC family protein compare
BWI76_RS14805 +0.7 1.6 hypothetical protein compare
BWI76_RS08905 +0.7 4.0 transketolase compare
BWI76_RS17945 +0.7 0.9 hypothetical protein compare
BWI76_RS24155 +0.7 3.0 A/G-specific adenine glycosylase compare
BWI76_RS10855 +0.7 2.4 RND family efflux transporter MFP subunit compare
BWI76_RS24945 +0.7 1.2 glutamine amidotransferase compare
BWI76_RS25000 +0.7 0.9 malonate decarboxylase acyl carrier protein compare
BWI76_RS01010 +0.7 2.5 uridine phosphorylase compare
BWI76_RS20410 +0.7 2.8 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC compare
BWI76_RS01205 +0.7 1.2 DUF484 family protein compare
BWI76_RS13435 +0.7 0.8 hypothetical protein compare
BWI76_RS23055 +0.7 1.7 cobalamin biosynthesis protein CbiG compare
BWI76_RS11845 +0.7 2.0 tryptophan synthase subunit beta compare
BWI76_RS25220 +0.7 1.2 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS03665 +0.7 1.4 ABC transporter ATP-binding protein compare
BWI76_RS01620 +0.7 2.2 hypothetical protein compare
BWI76_RS16510 +0.7 0.8 transcriptional repressor PurR compare
BWI76_RS14030 +0.7 2.4 ABC transporter permease compare
BWI76_RS13155 +0.7 1.8 hypothetical protein compare
BWI76_RS16160 +0.7 1.4 LysR family transcriptional regulator compare
BWI76_RS13505 +0.7 2.4 putative receptor compare
BWI76_RS18420 +0.7 3.1 DNA (cytosine-5-)-methyltransferase compare
BWI76_RS18090 +0.7 0.7 phosphoribosylglycinamide formyltransferase 2 compare
BWI76_RS12825 +0.7 1.6 hypothetical protein compare
BWI76_RS08760 +0.7 1.3 biotin synthase compare
BWI76_RS07225 +0.7 1.6 putative oxidoreductase compare
BWI76_RS15200 +0.7 1.9 glutaminase compare
BWI76_RS15345 +0.7 1.8 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
BWI76_RS26285 +0.7 2.9 glycerophosphodiester phosphodiesterase compare
BWI76_RS04275 +0.7 3.1 molybdopterin adenylyltransferase compare
BWI76_RS01715 +0.7 2.8 shikimate 5-dehydrogenase compare
BWI76_RS07780 +0.7 0.8 hypothetical protein compare
BWI76_RS04060 +0.7 1.0 hypothetical protein compare
BWI76_RS09065 +0.7 3.0 sugar phosphatase SupH compare
BWI76_RS13420 +0.7 0.9 ABC transporter permease compare
BWI76_RS14540 +0.7 1.7 yersiniabactin biosynthetic protein YbtU compare
BWI76_RS15915 +0.7 3.6 YnfC family lipoprotein compare
BWI76_RS07460 +0.7 1.7 hypothetical protein compare
BWI76_RS24660 +0.7 2.2 autoinducer 2 ABC transporter ATP-binding protein LsrA compare
BWI76_RS14915 +0.7 1.8 hypothetical protein compare
BWI76_RS13320 +0.7 1.8 putative LpxA-like enzyme compare
BWI76_RS00740 +0.7 2.2 ribonuclease E activity regulator RraA compare
BWI76_RS07255 +0.7 2.0 hypothetical protein compare
BWI76_RS14160 +0.7 1.5 ABC transporter substrate-binding protein compare
BWI76_RS21275 +0.7 3.5 lytic transglycosylase F compare
BWI76_RS13800 +0.7 1.7 zinc-dependent alcohol dehydrogenase compare
BWI76_RS07895 +0.7 1.5 sugar ABC transporter ATPase compare
BWI76_RS01665 +0.7 2.1 Isocitrate lyase (EC 4.1.3.1) (from data) compare
BWI76_RS13955 +0.7 1.8 hypothetical protein compare
BWI76_RS18735 +0.7 2.0 tautomerase family protein compare
BWI76_RS20805 +0.7 2.1 phosphate acetyltransferase compare
BWI76_RS17970 +0.7 1.5 zinc metalloprotease HtpX compare
BWI76_RS10495 +0.7 1.7 LysR family transcriptional regulator compare
BWI76_RS22005 +0.7 4.2 hypothetical protein compare
BWI76_RS21390 +0.7 1.6 thiol disulfide reductase thioredoxin compare
BWI76_RS07435 +0.7 1.8 LacI family transcriptional regulator compare
BWI76_RS04465 +0.7 2.2 carbamoyl-phosphate synthase small subunit compare
BWI76_RS17965 +0.7 2.4 MFS transporter compare
BWI76_RS24515 +0.7 2.4 urease accessory protein UreE compare
BWI76_RS25380 +0.7 1.5 oxaloacetate decarboxylase subunit beta compare
BWI76_RS08815 +0.7 2.5 cyclic pyranopterin phosphate synthase compare
BWI76_RS26280 +0.7 1.4 hypothetical protein compare
BWI76_RS12480 +0.7 3.1 TIGR01620 family protein compare
BWI76_RS27045 +0.7 2.7 XylR family transcriptional regulator compare
BWI76_RS19345 +0.7 2.4 D-arabinitol 4-dehydrogenase compare
BWI76_RS22270 +0.7 2.2 nickel transporter compare
BWI76_RS10635 +0.7 1.9 GGDEF domain-containing protein compare
BWI76_RS08745 +0.7 2.0 proline-specific permease compare
BWI76_RS24060 +0.7 2.1 SprT family protein compare
BWI76_RS18390 +0.6 1.3 hypothetical protein compare
BWI76_RS09565 +0.6 2.7 hybrid-cluster NAD(P)-dependent oxidoreductase compare
BWI76_RS16290 +0.6 2.3 Mal regulon transcriptional regulator MalI compare
BWI76_RS17690 +0.6 3.0 putative glycoporin compare
BWI76_RS20605 +0.6 1.8 purine-nucleoside phosphorylase compare
BWI76_RS06440 +0.6 1.5 AP endonuclease compare
BWI76_RS14670 +0.6 0.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL across organisms