Experiment set14IT059 for Klebsiella michiganensis M5al

Compare to:

LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS00025 +1.8 2.2 hypothetical protein compare
BWI76_RS11810 +1.8 2.6 outer membrane protein OmpW compare
BWI76_RS07730 +1.7 1.2 iron-enterobactin transporter membrane protein compare
BWI76_RS17190 +1.6 2.7 TonB system transport protein TonB compare
BWI76_RS15215 +1.4 1.3 N-acetyltransferase compare
BWI76_RS08765 +1.4 3.3 8-amino-7-oxononanoate synthase compare
BWI76_RS14805 +1.4 2.5 hypothetical protein compare
BWI76_RS20155 +1.3 1.3 NADH-quinone oxidoreductase subunit I compare
BWI76_RS15350 +1.3 1.3 hypothetical protein compare
BWI76_RS23915 +1.2 1.8 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS24810 +1.2 3.0 hypothetical protein compare
BWI76_RS06810 +1.1 2.4 hypothetical protein compare
BWI76_RS04915 +1.1 2.8 hypothetical protein compare
BWI76_RS01675 +1.1 2.9 putative cytoplasmic protein compare
BWI76_RS23320 +1.1 1.6 hypothetical protein compare
BWI76_RS12790 +1.1 1.1 lactate dehydrogenase compare
BWI76_RS20800 +1.1 2.1 carboxysome shell protein compare
BWI76_RS18165 +1.1 1.1 NUDIX pyrophosphatase compare
BWI76_RS19480 +1.1 3.8 transcriptional regulator compare
BWI76_RS05790 +1.1 1.3 phage DNA-binding protein compare
BWI76_RS13215 +1.0 1.7 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS14835 +1.0 1.7 hypothetical protein compare
BWI76_RS01935 +1.0 1.7 thiamin phosphate synthase compare
BWI76_RS02725 +1.0 1.0 HxlR family transcriptional regulator compare
BWI76_RS21685 +1.0 1.0 hypothetical protein compare
BWI76_RS14075 +1.0 1.1 TetR family transcriptional regulator compare
BWI76_RS17390 +1.0 2.0 DsrE family protein compare
BWI76_RS24500 +1.0 2.0 urease subunit gamma compare
BWI76_RS20230 +1.0 1.1 hypothetical protein compare
BWI76_RS06335 +1.0 4.0 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS17375 +1.0 1.7 nitrate ABC transporter, permease protein compare
BWI76_RS13660 +1.0 3.0 nitrate reductase subunit beta compare
BWI76_RS01585 +1.0 3.7 transcriptional regulator compare
BWI76_RS19895 +0.9 2.3 bifunctional transcriptional regulator/O6-methylguanine-DNA methyltransferase compare
BWI76_RS14980 +0.9 0.8 hypothetical protein compare
BWI76_RS12825 +0.9 2.3 hypothetical protein compare
BWI76_RS04955 +0.9 1.5 hypoxanthine phosphoribosyltransferase compare
BWI76_RS05070 +0.9 2.4 type II secretion system protein GspH compare
BWI76_RS18810 +0.9 2.3 nitrogenase iron protein compare
BWI76_RS19585 +0.9 1.2 gentisate 1,2-dioxygenase compare
BWI76_RS23760 +0.9 1.4 tRNA-Gly compare
BWI76_RS26405 +0.9 1.6 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS17400 +0.9 1.0 transporter compare
BWI76_RS07645 +0.9 1.5 short-chain dehydrogenase/reductase compare
BWI76_RS03595 +0.9 1.2 ethanolamine utilization protein EutM compare
BWI76_RS07475 +0.9 1.4 DNA-binding transcriptional regulator RamA compare
BWI76_RS08835 +0.9 3.9 molybdopterin guanine dinucleotide biosynthesis protein MoaE compare
BWI76_RS19530 +0.9 3.0 YIP1 family protein compare
BWI76_RS03665 +0.9 1.8 ABC transporter ATP-binding protein compare
BWI76_RS22200 +0.9 2.9 iron ABC transporter compare
BWI76_RS12665 +0.9 2.1 hypothetical protein compare
BWI76_RS13320 +0.8 2.3 putative LpxA-like enzyme compare
BWI76_RS10725 +0.8 2.4 hypothetical protein compare
BWI76_RS15295 +0.8 3.1 MDR efflux pump AcrAB transcriptional activator MarA compare
BWI76_RS12465 +0.8 1.2 phage shock protein D compare
BWI76_RS17805 +0.8 0.8 membrane protein compare
BWI76_RS06130 +0.8 1.7 extensin family protein compare
BWI76_RS23520 +0.8 1.2 hypothetical protein compare
BWI76_RS15220 +0.8 2.1 L-lactate dehydrogenase compare
BWI76_RS01665 +0.8 3.5 Isocitrate lyase (EC 4.1.3.1) (from data) compare
BWI76_RS22450 +0.8 1.9 selenoprotein W-related protein compare
BWI76_RS20970 +0.8 1.3 phosphoribosylglycinamide formyltransferase compare
BWI76_RS18735 +0.8 2.6 tautomerase family protein compare
BWI76_RS05465 +0.8 1.0 amidohydrolase compare
BWI76_RS15975 +0.8 0.6 hypothetical protein compare
BWI76_RS09130 +0.8 2.6 biofilm formation regulatory protein BssR compare
BWI76_RS09830 +0.8 1.8 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
BWI76_RS06400 +0.8 1.6 oxidative-stress-resistance chaperone compare
BWI76_RS07165 +0.8 1.6 hypothetical protein compare
BWI76_RS25485 +0.8 1.4 septum formation protein Maf compare
BWI76_RS10575 +0.8 0.7 polar amino acid ABC transporter permease compare
BWI76_RS01240 +0.8 4.6 phospholipase A compare
BWI76_RS16220 +0.8 1.3 hypothetical protein compare
BWI76_RS13640 +0.8 2.0 binding-protein-dependent transport system inner membrane protein compare
BWI76_RS21275 +0.8 3.4 lytic transglycosylase F compare
BWI76_RS11630 +0.8 2.7 sulfurtransferase compare
BWI76_RS15900 +0.8 3.1 hypothetical protein compare
BWI76_RS15260 +0.8 0.9 hypothetical protein compare
BWI76_RS24260 +0.8 1.4 hypothetical protein compare
BWI76_RS10400 +0.8 1.9 hypothetical protein compare
BWI76_RS25545 +0.8 1.8 hypothetical protein compare
BWI76_RS17300 +0.8 0.9 tRNA-Tyr compare
BWI76_RS08380 +0.8 0.6 endonuclease VIII compare
BWI76_RS13625 +0.8 2.4 hypothetical protein compare
BWI76_RS13240 +0.8 1.1 hypothetical protein compare
BWI76_RS12480 +0.8 1.9 TIGR01620 family protein compare
BWI76_RS11780 +0.7 2.4 2-deoxyglucose-6-phosphatase compare
BWI76_RS11335 +0.7 1.1 tautomerase compare
BWI76_RS13435 +0.7 0.8 hypothetical protein compare
BWI76_RS14955 +0.7 2.8 peptidase M17 leucyl aminopeptidase domain-containing protein compare
BWI76_RS15940 +0.7 1.0 DMSO reductase maturation protein DsmD compare
BWI76_RS13090 +0.7 2.0 phenylacetate-CoA oxygenase subunit PaaA compare
BWI76_RS01350 +0.7 0.5 NAD(P)H-flavin reductase compare
BWI76_RS23025 +0.7 2.5 cobalt ABC transporter substrate-binding protein CbiN compare
BWI76_RS04985 +0.7 1.9 aspartate 1-decarboxylase compare
BWI76_RS05880 +0.7 1.2 AraC-type DNA-binding domain-containing protein compare
BWI76_RS25285 +0.7 0.7 HPr family phosphocarrier protein compare
BWI76_RS14800 +0.7 2.8 non-heme chloroperoxidase compare
BWI76_RS11950 +0.7 1.7 phosphatidylglycerophosphatase B compare
BWI76_RS20910 +0.7 3.5 glycine cleavage system transcriptional repressor compare
BWI76_RS08450 +0.7 2.1 fumarate hydratase compare
BWI76_RS09360 +0.7 1.9 hypothetical protein compare
BWI76_RS23255 +0.7 1.5 prepilin-type cleavage/methylation domain-containing protein compare
BWI76_RS19360 +0.7 1.4 glucose dehydrogenase compare
BWI76_RS12040 +0.7 1.0 hypothetical protein compare
BWI76_RS26635 +0.7 1.5 hypothetical protein compare
BWI76_RS20795 +0.7 0.9 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS11515 +0.7 1.0 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS22130 +0.7 1.2 fructose-1-phosphate/6-phosphogluconate phosphatase compare
BWI76_RS14780 +0.7 1.8 phosphotriesterase compare
BWI76_RS08905 +0.7 2.7 transketolase compare
BWI76_RS04560 +0.7 1.8 holo-ACP synthase CitX compare
BWI76_RS10035 +0.7 1.1 hypothetical protein compare
BWI76_RS16590 +0.7 1.7 short-chain dehydrogenase compare
BWI76_RS16030 +0.7 2.4 malonate decarboxylase acyl carrier protein compare
BWI76_RS04970 +0.7 2.1 ABC transporter permease compare
BWI76_RS17900 +0.7 2.4 PTS mannose transporter subunit IID compare
BWI76_RS22035 +0.7 2.8 DeoR family transcriptional regulator compare
BWI76_RS23195 +0.7 1.2 ethanolamine utilization protein EutP compare
BWI76_RS12070 +0.7 0.6 hypothetical protein compare
BWI76_RS14950 +0.7 2.4 glycosylasparaginase compare
BWI76_RS20930 +0.7 1.5 arsenate reductase (glutaredoxin) compare
BWI76_RS09540 +0.7 1.9 hypothetical protein compare
BWI76_RS14010 +0.7 2.3 SDR family oxidoreductase compare
BWI76_RS27850 +0.7 2.4 DNA-binding transcriptional regulator DsdC compare
BWI76_RS06815 +0.7 1.1 adenine phosphoribosyltransferase compare
BWI76_RS07725 +0.7 0.7 iron-enterobactin transporter permease compare
BWI76_RS24540 +0.7 2.8 hypothetical protein compare
BWI76_RS14190 +0.6 3.2 DNA-binding protein compare
BWI76_RS09725 +0.6 2.4 MurR/RpiR family transcriptional regulator compare
BWI76_RS14875 +0.6 2.9 ribokinase-like domain-containing protein compare
BWI76_RS16655 +0.6 3.5 CatA-like O-acetyltransferase compare
BWI76_RS09220 +0.6 3.0 hypothetical protein compare
BWI76_RS26480 +0.6 2.9 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
BWI76_RS04840 +0.6 2.0 prepilin peptidase-dependent pilin compare
BWI76_RS18065 +0.6 0.9 DNA polymerase III subunit theta compare
BWI76_RS07735 +0.6 2.4 MFS transporter compare
BWI76_RS16095 +0.6 1.2 thiamine biosynthesis protein ApbE compare
BWI76_RS11790 +0.6 1.4 acyl-CoA thioesterase compare
BWI76_RS10505 +0.6 1.7 putative guanine/xanthin permease compare
BWI76_RS14540 +0.6 1.8 yersiniabactin biosynthetic protein YbtU compare
BWI76_RS15080 +0.6 5.2 hypothetical protein compare
BWI76_RS19540 +0.6 3.3 multidrug transporter permease compare
BWI76_RS15795 +0.6 1.7 bacteriophage CII family protein compare
BWI76_RS16810 +0.6 2.1 RpiR family transcriptional regulator compare
BWI76_RS01205 +0.6 1.0 DUF484 family protein compare
BWI76_RS20775 +0.6 2.3 ethanolamine utilization protein EutH compare
BWI76_RS15120 +0.6 2.1 hypothetical protein compare
BWI76_RS18130 +0.6 1.7 zinc ABC transporter substrate-binding protein compare
BWI76_RS10835 +0.6 0.7 hypothetical protein compare
BWI76_RS08855 +0.6 1.7 endonuclease/exonuclease/phosphatase compare
BWI76_RS23030 +0.6 1.3 cobalamin biosynthesis protein CbiM compare
BWI76_RS22965 +0.6 2.4 cysteine sulfinate desulfinase compare
BWI76_RS11755 +0.6 1.8 catalase HPII compare
BWI76_RS15270 +0.6 2.3 phenazine biosynthesis protein PhzF family compare
BWI76_RS14925 +0.6 2.2 ABC transporter substrate-binding protein compare
BWI76_RS06470 +0.6 2.2 hypothetical protein compare
BWI76_RS18855 +0.6 1.9 cysteine desulfurase NifS compare
BWI76_RS13720 +0.6 2.9 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
BWI76_RS00880 +0.6 2.6 membrane protein compare
BWI76_RS16915 +0.6 1.6 alpha/beta hydrolase fold protein compare
BWI76_RS07530 +0.6 1.8 binding-protein-dependent transport system inner membrane protein compare
BWI76_RS02585 +0.6 3.4 hypothetical protein compare
BWI76_RS03040 +0.6 2.6 leucyl aminopeptidase compare
BWI76_RS02800 +0.6 2.3 ABC transporter compare
BWI76_RS04155 +0.6 2.5 membrane protein compare
BWI76_RS19305 +0.6 3.1 ABC transporter ATP-binding protein compare
BWI76_RS14765 +0.6 2.2 PTS lactose/cellobiose transporter subunit IIB compare
BWI76_RS10560 +0.6 1.6 gamma-glutamyltransferase compare
BWI76_RS08655 +0.6 1.1 molybdenum ABC transporter ATP-binding protein compare
BWI76_RS27455 +0.6 1.6 DUF805 domain-containing protein compare
BWI76_RS22110 +0.6 1.9 putative helix-turn-helix AraC-type transcriptional regulator compare
BWI76_RS12780 +0.6 1.0 hypothetical protein compare
BWI76_RS04850 +0.6 1.2 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS07810 +0.6 2.0 sugar ABC transporter periplasmic sugar-binding protein compare
BWI76_RS16755 +0.6 1.4 acetoin reductase compare
BWI76_RS16390 +0.6 2.2 dipeptide/tripeptide permease A compare
BWI76_RS00290 +0.6 2.6 Ribokinase (EC 2.7.1.15) (from data) compare
BWI76_RS21675 +0.6 0.4 hypothetical protein compare
BWI76_RS18395 +0.6 2.5 diguanylate cyclase compare
BWI76_RS13880 +0.6 2.0 lysine transporter LysE compare
BWI76_RS16490 +0.6 0.8 glutaredoxin compare
BWI76_RS08515 +0.6 1.0 acyl-CoA thioesterase YbgC compare
BWI76_RS12470 +0.6 1.0 thiosulfate sulfurtransferase PspE compare
BWI76_RS16900 +0.6 0.6 4-hydroxy-2-oxovalerate aldolase compare
BWI76_RS26875 +0.6 1.4 dipeptide ABC transporter permease DppC compare
BWI76_RS27670 +0.6 2.4 LysR family transcriptional regulator compare
BWI76_RS20765 +0.6 1.7 ethanolamine ammonia lyase large subunit compare
BWI76_RS27625 +0.6 2.5 NADPH:quinone reductase compare
BWI76_RS10420 +0.6 3.4 monooxygenase compare
BWI76_RS01890 +0.6 1.7 transcriptional regulator Zur compare
BWI76_RS20325 +0.6 1.4 histidine/lysine/arginine/ornithine ABC transporter permease HisM compare
BWI76_RS00475 +0.6 2.2 sulfurtransferase FdhD compare
BWI76_RS04875 +0.6 3.3 transcriptional regulator PdhR compare
BWI76_RS26965 +0.6 3.2 hypothetical protein compare
BWI76_RS24955 +0.6 1.5 hypothetical protein compare
BWI76_RS21795 +0.6 1.1 EAL domain-containing protein compare
BWI76_RS10585 +0.6 1.5 amino acid ABC transporter ATP-binding protein compare
BWI76_RS14750 +0.6 1.7 transcriptional regulator compare
BWI76_RS01840 +0.6 1.7 maltose ABC transporter, ATPase component (MalK) (from data) compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL across organisms