Experiment set14IT058 for Klebsiella michiganensis M5al

Compare to:

LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS26460 -4.5 -3.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS21310 -4.5 -1.4 DNA repair protein RecO compare
BWI76_RS05260 -4.5 -1.4 chaperone compare
BWI76_RS26455 -4.5 -2.0 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS08520 -4.1 -2.2 colicin transporter TolQ compare
BWI76_RS23265 -4.1 -1.8 hypothetical protein compare
BWI76_RS26730 -3.9 -6.9 inner membrane protein YhjD compare
BWI76_RS21450 -3.7 -2.3 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS21070 -3.6 -2.0 outer membrane protein assembly factor BamB compare
BWI76_RS01080 -3.6 -8.2 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS05015 -3.6 -2.3 transcriptional regulator compare
BWI76_RS09760 -3.5 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS10990 -3.5 -3.2 dihydroorotase compare
BWI76_RS08530 -3.5 -1.6 protein TolA compare
BWI76_RS25070 -3.4 -1.6 hypothetical protein compare
BWI76_RS25335 -3.4 -1.9 stringent starvation protein A compare
BWI76_RS25920 -3.4 -1.9 peptidylprolyl isomerase compare
BWI76_RS11155 -3.4 -2.6 penicillin-binding protein activator LpoB compare
BWI76_RS05120 -3.3 -6.7 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS01115 -3.3 -2.4 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS24100 -3.2 -3.7 YggS family pyridoxal phosphate enzyme compare
BWI76_RS18605 -3.1 -1.7 oxidoreductase molybdopterin-binding protein compare
BWI76_RS26665 -3.1 -3.0 DNA-binding response regulator compare
BWI76_RS08525 -3.1 -1.5 colicin transporter compare
BWI76_RS23920 -3.1 -2.1 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS14320 -3.0 -2.0 hypothetical protein compare
BWI76_RS27425 -3.0 -1.6 DNA-directed RNA polymerase subunit omega compare
BWI76_RS14005 -3.0 -1.6 TetR family transcriptional regulator compare
BWI76_RS01125 -2.9 -4.0 4-alpha-L-fucosyltransferase compare
BWI76_RS15360 -2.9 -3.3 hypothetical protein compare
BWI76_RS07465 -2.9 -1.3 TetR family transcriptional regulator compare
BWI76_RS06535 -2.8 -1.9 endopeptidase La compare
BWI76_RS01110 -2.8 -5.8 TDP-fucosamine acetyltransferase compare
BWI76_RS01350 -2.7 -0.9 NAD(P)H-flavin reductase compare
BWI76_RS15825 -2.7 -1.1 hypothetical protein compare
BWI76_RS09640 -2.7 -1.8 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS08535 -2.7 -1.4 translocation protein TolB compare
BWI76_RS21350 -2.6 -2.1 anti-RNA polymerase sigma factor SigE compare
BWI76_RS02815 -2.6 -1.5 fructose-bisphosphatase class I compare
BWI76_RS00875 -2.6 -4.6 DNA-binding transcriptional regulator FabR compare
BWI76_RS21580 -2.6 -1.4 SsrA-binding protein compare
BWI76_RS09645 -2.6 -0.8 thioredoxin-disulfide reductase compare
BWI76_RS26470 -2.5 -3.7 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS24605 -2.5 -4.4 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS13820 -2.4 -1.6 hypothetical protein compare
BWI76_RS19905 -2.4 -3.8 OmpK36 porin compare
BWI76_RS02775 -2.4 -4.3 outer membrane protein assembly factor compare
BWI76_RS21370 -2.3 -1.0 ATP-dependent RNA helicase SrmB compare
BWI76_RS04160 -2.3 -2.9 phosphoserine phosphatase compare
BWI76_RS26440 -2.3 -1.2 hypothetical protein compare
BWI76_RS00240 -2.3 -1.4 FMN-binding protein MioC compare
BWI76_RS04645 -2.3 -3.0 3-dehydroquinase compare
BWI76_RS17300 -2.3 -0.9 tRNA-Tyr compare
BWI76_RS25870 -2.2 -1.4 elongation factor Tu compare
BWI76_RS24850 -2.2 -5.9 DeoR family transcriptional regulator compare
BWI76_RS01135 -2.2 -3.7 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS17980 -2.2 -3.9 RNA chaperone ProQ compare
BWI76_RS01800 -2.2 -2.2 glucose-6-phosphate isomerase compare
BWI76_RS24740 -2.1 -3.3 GntR family transcriptional regulator compare
BWI76_RS08395 -2.1 -1.7 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS21345 -2.1 -2.1 sigma-E factor regulatory protein RseB compare
BWI76_RS01090 -2.1 -2.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS25060 -2.1 -4.2 lipoprotein NlpI compare
BWI76_RS09615 -2.0 -2.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS17975 -2.0 -3.9 tail-specific protease compare
BWI76_RS24580 -2.0 -3.2 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS26175 -2.0 -4.9 DeoR/GlpR family transcriptional regulator compare
BWI76_RS09730 -2.0 -0.8 pyruvate formate lyase 1-activating protein compare
BWI76_RS21685 -2.0 -1.0 hypothetical protein compare
BWI76_RS10935 -2.0 -3.6 glucan biosynthesis glucosyltransferase H compare
BWI76_RS25600 -1.9 -0.8 tRNA-Thr compare
BWI76_RS02530 -1.9 -1.3 tRNA dimethylallyltransferase compare
BWI76_RS08605 -1.9 -1.4 phosphoglyceromutase compare
BWI76_RS11980 -1.9 -1.6 DeoR family transcriptional regulator compare
BWI76_RS13560 -1.9 -0.8 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS02780 -1.8 -9.5 translocation and assembly module TamB compare
BWI76_RS16955 -1.8 -1.0 hypothetical protein compare
BWI76_RS22760 -1.8 -3.3 sulfite reductase subunit beta compare
BWI76_RS21460 -1.8 -1.1 translation inhibitor protein RaiA compare
BWI76_RS12170 -1.8 -2.6 hypothetical protein compare
BWI76_RS08020 -1.8 -3.9 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS18000 -1.8 -3.5 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
BWI76_RS01170 -1.8 -2.2 uroporphyrinogen-III C-methyltransferase compare
BWI76_RS13915 -1.8 -6.1 magnesium transport protein MgtC compare
BWI76_RS09970 -1.8 -1.0 porin OmpA compare
BWI76_RS00180 -1.8 -0.8 F0F1 ATP synthase subunit epsilon compare
BWI76_RS21250 -1.7 -4.3 two-component system response regulator GlrR compare
BWI76_RS20150 -1.7 -1.9 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS15110 -1.7 -1.2 putative excinuclease ABC subunit A compare
BWI76_RS11635 -1.7 -1.3 ABC transporter compare
BWI76_RS15660 -1.7 -1.8 hypothetical protein compare
BWI76_RS22690 -1.7 -1.9 adenylyl-sulfate kinase compare
BWI76_RS12535 -1.7 -4.1 hypothetical protein compare
BWI76_RS05570 -1.6 -0.9 hypothetical protein compare
BWI76_RS26670 -1.6 -4.8 two-component sensor histidine kinase compare
BWI76_RS04705 -1.6 -3.5 DNA-binding transcriptional regulator FruR compare
BWI76_RS00720 -1.6 -1.6 DNA-binding response regulator compare
BWI76_RS01220 -1.6 -4.3 DNA-dependent helicase II compare
BWI76_RS15115 -1.6 -1.1 MFS transporter compare
BWI76_RS24900 -1.6 -0.9 DeoR family transcriptional regulator compare
BWI76_RS03225 -1.5 -4.1 transcriptional regulator compare
BWI76_RS15635 -1.5 -3.0 hypothetical protein compare
BWI76_RS23285 -1.5 -1.7 hypothetical protein compare
BWI76_RS22755 -1.5 -3.5 phosphoadenosine phosphosulfate reductase compare
BWI76_RS15620 -1.5 -1.9 hypothetical protein compare
BWI76_RS02340 -1.5 -3.7 membrane protein FxsA compare
BWI76_RS24400 -1.5 -2.0 outer membrane channel protein TolC compare
BWI76_RS23830 -1.5 -3.7 hypothetical protein compare
BWI76_RS11235 -1.5 -1.3 hypothetical protein compare
BWI76_RS09825 -1.5 -4.1 envelope biogenesis factor ElyC compare
BWI76_RS12895 -1.5 -2.8 hypothetical protein compare
BWI76_RS16965 -1.5 -2.0 murein lipoprotein compare
BWI76_RS00345 -1.4 -2.1 protein disulfide oxidoreductase DsbA compare
BWI76_RS25425 -1.4 -0.9 arginine repressor compare
BWI76_RS07070 -1.4 -3.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS18470 -1.4 -2.0 hypothetical protein compare
BWI76_RS26390 -1.4 -4.6 cell division protein FtsX compare
BWI76_RS23360 -1.4 -1.5 diaminopimelate decarboxylase compare
BWI76_RS03660 -1.4 -2.1 hypothetical protein compare
BWI76_RS04270 -1.4 -3.8 transaldolase compare
BWI76_RS16480 -1.4 -1.6 lactoylglutathione lyase compare
BWI76_RS07185 -1.4 -0.9 hypothetical protein compare
BWI76_RS11770 -1.4 -2.2 hypothetical protein compare
BWI76_RS05450 -1.4 -0.6 ribonuclease HI compare
BWI76_RS08385 -1.4 -2.4 citrate (Si)-synthase compare
BWI76_RS27820 -1.4 -0.8 ilvB operon leader peptide IvbL compare
BWI76_RS15225 -1.4 -3.1 DeoR family transcriptional regulator compare
BWI76_RS14770 -1.4 -0.9 PTS IIA 2 domain protein compare
BWI76_RS16275 -1.4 -2.5 fumarate hydratase FumA compare
BWI76_RS18390 -1.4 -1.7 hypothetical protein compare
BWI76_RS09190 -1.4 -1.3 hypothetical protein compare
BWI76_RS21570 -1.4 -1.2 RnfH family protein compare
BWI76_RS05880 -1.4 -1.4 AraC-type DNA-binding domain-containing protein compare
BWI76_RS06680 -1.4 -0.9 hypothetical protein compare
BWI76_RS06525 -1.4 -3.2 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS11150 -1.4 -1.3 membrane protein compare
BWI76_RS07785 -1.4 -1.3 transcriptional regulator compare
BWI76_RS02610 -1.4 -3.7 transcriptional regulator compare
BWI76_RS06520 -1.4 -2.3 trigger factor compare
BWI76_RS12090 -1.4 -1.8 HNH endonuclease compare
BWI76_RS08360 -1.4 -2.1 LamB/YcsF family protein compare
BWI76_RS09275 -1.3 -3.0 major capsid protein compare
BWI76_RS26395 -1.3 -3.3 cell division protein FtsE compare
BWI76_RS25065 -1.3 -2.5 polyribonucleotide nucleotidyltransferase compare
BWI76_RS17720 -1.3 -0.4 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS12345 -1.3 -3.0 nitrite transporter compare
BWI76_RS27385 -1.3 -4.8 orotate phosphoribosyltransferase compare
BWI76_RS00715 -1.3 -0.9 two-component sensor histidine kinase compare
BWI76_RS08040 -1.3 -1.4 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS10930 -1.3 -5.2 glucan biosynthesis protein G compare
BWI76_RS19860 -1.3 -2.1 hypothetical protein compare
BWI76_RS12610 -1.3 -2.9 LysR family transcriptional regulator compare
BWI76_RS02550 -1.3 -2.3 protease modulator HflC compare
BWI76_RS22420 -1.3 -1.3 LacI family transcriptional regulator compare
BWI76_RS20380 -1.3 -0.5 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS01185 -1.2 -0.8 adenylate cyclase compare
BWI76_RS12870 -1.2 -1.5 putative phytanoyl-CoA dioxygenase compare
BWI76_RS17530 -1.2 -1.8 hypothetical protein compare
BWI76_RS03170 -1.2 -4.3 hypothetical protein compare
BWI76_RS12335 -1.2 -4.4 hypothetical protein compare
BWI76_RS09910 -1.2 -7.0 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS24750 -1.2 -4.0 membrane protein compare
BWI76_RS23885 -1.2 -0.7 2-octaprenylphenol hydroxylase compare
BWI76_RS08210 -1.2 -0.7 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS16920 -1.2 -0.8 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS17370 -1.2 -1.5 nitrate transporter NasD compare
BWI76_RS00400 -1.2 -0.6 glutamine synthetase compare
BWI76_RS22805 -1.2 -5.6 GTP diphosphokinase compare
BWI76_RS21340 -1.2 -1.0 SoxR reducing system protein RseC compare
BWI76_RS21260 -1.2 -3.1 two-component sensor histidine kinase compare
BWI76_RS01870 -1.2 -2.2 diacylglycerol kinase compare
BWI76_RS11735 -1.2 -2.0 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
BWI76_RS20180 -1.2 -2.3 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS08425 -1.1 -2.6 succinyl-CoA ligase subunit beta compare
BWI76_RS16950 -1.1 -1.3 TetR family transcriptional regulator compare
BWI76_RS08665 -1.1 -3.3 6-phosphogluconolactonase compare
BWI76_RS16075 -1.1 -1.2 oxidoreductase compare
BWI76_RS05785 -1.1 -3.2 CI repressor compare
BWI76_RS15830 -1.1 -2.5 hypothetical protein compare
BWI76_RS22950 -1.1 -1.4 membrane protein compare
BWI76_RS08380 -1.1 -0.9 endonuclease VIII compare
BWI76_RS12340 -1.1 -2.6 molecular chaperone Tir compare
BWI76_RS19010 -1.1 -1.7 polysaccharide pyruvyl transferase yvff compare
BWI76_RS01095 -1.1 -1.1 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS13595 -1.1 -2.4 transcriptional regulator compare
BWI76_RS20730 -1.1 -1.2 hypothetical protein compare
BWI76_RS19705 -1.1 -1.9 kinase compare
BWI76_RS14390 -1.1 -1.0 hypothetical protein compare
BWI76_RS23970 -1.1 -1.8 mechanosensitive ion channel protein MscS compare
BWI76_RS01580 -1.1 -1.6 hypothetical protein compare
BWI76_RS01200 -1.1 -0.7 diaminopimelate epimerase compare
BWI76_RS17195 -1.1 -1.5 hypothetical protein compare
BWI76_RS10305 -1.1 -4.1 transposase compare
BWI76_RS00755 -1.1 -1.9 ATP-dependent protease subunit HslV compare
BWI76_RS06780 -1.1 -3.1 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS00795 -1.1 -2.2 carboxymuconolactone decarboxylase compare
BWI76_RS23490 -1.1 -2.1 fimbrial protein compare
BWI76_RS15715 -1.1 -2.1 putative ninG protein compare
BWI76_RS13025 -1.1 -3.2 histidine phosphatase family protein compare
BWI76_RS19900 -1.0 -1.7 FAD:protein FMN transferase compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL across organisms