Experiment set14IT057 for Shewanella oneidensis MR-1

Ferric citrate electron acceptor; ground control

Group: ground_control
Media: SBM_defined + Sodium D,L-Lactate (20 mM) + Ferric citrate (10 mM), pH=7.2
Culturing: MR1_ML3b, Bioserve FPA, Anaerobic, at 30 (C)
By: Michael Dougherty on 5-Sep-18

Specific Phenotypes

For 12 genes in this experiment

For ground_control Sodium D,L-Lactate in Shewanella oneidensis MR-1

For ground_control Sodium D,L-Lactate across organisms

SEED Subsystems

Subsystem	#Specific
Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes	5
ABC transporter tungstate (TC 3.A.1.6.2)	1
Anaerobic respiratory reductases	1
Cobalt-zinc-cadmium resistance	1
Formate hydrogenase	1
Lipid A modifications	1
Menaquinone and Phylloquinone Biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Ubiquinone and menaquinone biosynthesis
• Glyoxylate and dicarboxylate metabolism
• Methane metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
2-carboxy-1,4-naphthoquinol biosynthesis	7	7	1
superpathway of demethylmenaquinol-8 biosynthesis I	9	9	1
superpathway of demethylmenaquinol-6 biosynthesis I	9	8	1
superpathway of demethylmenaquinol-9 biosynthesis	9	8	1
superpathway of menaquinol-8 biosynthesis I	10	10	1
superpathway of menaquinol-12 biosynthesis	10	9	1
superpathway of menaquinol-7 biosynthesis	10	9	1
superpathway of menaquinol-11 biosynthesis	10	9	1
superpathway of menaquinol-13 biosynthesis	10	9	1
superpathway of menaquinol-10 biosynthesis	10	9	1
superpathway of menaquinol-9 biosynthesis	10	9	1
superpathway of menaquinol-6 biosynthesis	10	9	1
superpathway of phylloquinol biosynthesis	15	8	1
superpathway of chorismate metabolism	59	50	1