Experiment set14IT056 for Klebsiella michiganensis M5al

Compare to:

LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS20440 -5.8 -2.6 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS08395 -5.3 -1.2 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS24600 -5.2 -2.0 dihydroxyacetone kinase compare
BWI76_RS24740 -5.2 -2.0 GntR family transcriptional regulator compare
BWI76_RS20160 -5.2 -2.3 NADH-quinone oxidoreductase subunit H compare
BWI76_RS06635 -5.1 -1.9 methylated-DNA--protein-cysteine methyltransferase compare
BWI76_RS12040 -5.0 -1.1 hypothetical protein compare
BWI76_RS21115 -4.8 -1.9 3-mercaptopyruvate sulfurtransferase compare
BWI76_RS16965 -4.7 -1.5 murein lipoprotein compare
BWI76_RS14300 -4.6 -2.1 hypothetical protein compare
BWI76_RS01095 -4.5 -1.8 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS01115 -4.5 -1.7 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS26455 -4.5 -1.4 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS11440 -4.4 -1.0 hypothetical protein compare
BWI76_RS26460 -4.4 -2.6 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS05260 -4.4 -1.0 chaperone compare
BWI76_RS05810 -4.3 -1.0 hypothetical protein compare
BWI76_RS11110 -4.3 -1.4 cell division protein YceG compare
BWI76_RS18090 -4.2 -1.3 phosphoribosylglycinamide formyltransferase 2 compare
BWI76_RS07820 -4.1 -1.3 S-methyl-5-thioribose kinase compare
BWI76_RS09335 -4.1 -0.9 baseplate assembly protein W compare
BWI76_RS12495 -4.1 -0.9 2-Cys peroxiredoxin compare
BWI76_RS23265 -4.0 -1.3 hypothetical protein compare
BWI76_RS18770 -4.0 -0.9 DNA gyrase inhibitor compare
BWI76_RS08520 -3.9 -1.5 colicin transporter TolQ compare
BWI76_RS16955 -3.8 -0.8 hypothetical protein compare
BWI76_RS12070 -3.7 -0.8 hypothetical protein compare
BWI76_RS22690 -3.7 -1.8 adenylyl-sulfate kinase compare
BWI76_RS11205 -3.7 -3.4 transcription-repair coupling factor compare
BWI76_RS04705 -3.6 -2.5 DNA-binding transcriptional regulator FruR compare
BWI76_RS06405 -3.6 -1.3 2-dehydropantoate 2-reductase compare
BWI76_RS11250 -3.5 -1.1 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS05570 -3.5 -0.8 hypothetical protein compare
BWI76_RS18455 -3.5 -0.8 tRNA-Ser compare
BWI76_RS16425 -3.5 -2.9 hypothetical protein compare
BWI76_RS11430 -3.5 -0.8 lipoprotein compare
BWI76_RS15950 -3.5 -1.1 dethiobiotin synthase compare
BWI76_RS26665 -3.4 -2.9 DNA-binding response regulator compare
BWI76_RS04160 -3.4 -2.0 phosphoserine phosphatase compare
BWI76_RS11635 -3.4 -1.1 ABC transporter compare
BWI76_RS06485 -3.4 -1.0 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS08530 -3.4 -1.1 protein TolA compare
BWI76_RS21235 -3.4 -0.7 hypothetical protein compare
BWI76_RS21070 -3.3 -1.3 outer membrane protein assembly factor BamB compare
BWI76_RS00750 -3.3 -3.0 ATP-dependent protease ATP-binding subunit HslU compare
BWI76_RS05015 -3.3 -1.5 transcriptional regulator compare
BWI76_RS19770 -3.2 -1.0 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS07510 -3.2 -2.1 hypothetical protein compare
BWI76_RS25920 -3.2 -1.2 peptidylprolyl isomerase compare
BWI76_RS05915 -3.2 -1.9 helix-turn-helix transcriptional regulator compare
BWI76_RS20360 -3.1 -0.7 cell division protein DedD compare
BWI76_RS13560 -3.1 -0.7 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS08750 -3.0 -1.2 kinase inhibitor compare
BWI76_RS14415 -3.0 -1.5 transcriptional regulator, TetR family protein compare
BWI76_RS05835 -2.9 -1.3 gamma-glutamyl-phosphate reductase compare
BWI76_RS16490 -2.9 -1.1 glutaredoxin compare
BWI76_RS16315 -2.9 -0.9 SirA-like protein compare
BWI76_RS16895 -2.9 -0.9 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS07465 -2.9 -0.9 TetR family transcriptional regulator compare
BWI76_RS09760 -2.9 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS17975 -2.9 -2.3 tail-specific protease compare
BWI76_RS07595 -2.8 -1.2 putative oxidoreductase compare
BWI76_RS08525 -2.8 -1.0 colicin transporter compare
BWI76_RS06475 -2.8 -0.9 protoheme IX farnesyltransferase compare
BWI76_RS19685 -2.8 -3.9 lysine transporter compare
BWI76_RS14320 -2.8 -1.4 hypothetical protein compare
BWI76_RS09755 -2.8 -1.7 phosphoserine transaminase compare
BWI76_RS21075 -2.8 -1.0 membrane protein compare
BWI76_RS17945 -2.8 -0.8 hypothetical protein compare
BWI76_RS01385 -2.8 -1.5 potassium transporter compare
BWI76_RS21660 -2.7 -1.1 antirestriction protein compare
BWI76_RS08495 -2.7 -4.1 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS23970 -2.7 -2.4 mechanosensitive ion channel protein MscS compare
BWI76_RS24595 -2.7 -2.6 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS09315 -2.7 -1.7 hypothetical protein compare
BWI76_RS17980 -2.7 -3.1 RNA chaperone ProQ compare
BWI76_RS16230 -2.7 -1.3 dihydromonapterin reductase compare
BWI76_RS17570 -2.7 -2.0 iron-sulfur-binding protein compare
BWI76_RS01350 -2.7 -0.6 NAD(P)H-flavin reductase compare
BWI76_RS15825 -2.7 -0.8 hypothetical protein compare
BWI76_RS14390 -2.6 -0.8 hypothetical protein compare
BWI76_RS01540 -2.6 -1.9 thiamine biosynthesis protein ThiS compare
BWI76_RS16200 -2.6 -1.1 NAD(P) transhydrogenase subunit beta compare
BWI76_RS00875 -2.6 -3.3 DNA-binding transcriptional regulator FabR compare
BWI76_RS02180 -2.6 -0.8 hypothetical protein compare
BWI76_RS17860 -2.6 -1.3 YoaH family protein compare
BWI76_RS24080 -2.6 -1.4 DUF179 domain-containing protein compare
BWI76_RS08210 -2.6 -0.8 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS06535 -2.5 -1.6 endopeptidase La compare
BWI76_RS13755 -2.5 -1.0 hypothetical protein compare
BWI76_RS23490 -2.5 -3.9 fimbrial protein compare
BWI76_RS26620 -2.5 -0.5 Fe-S biogenesis protein NfuA compare
BWI76_RS10955 -2.5 -1.3 hypothetical protein compare
BWI76_RS01800 -2.5 -1.4 glucose-6-phosphate isomerase compare
BWI76_RS20380 -2.5 -0.5 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS20355 -2.4 -2.0 colicin V production protein compare
BWI76_RS08535 -2.4 -0.9 translocation protein TolB compare
BWI76_RS21580 -2.4 -0.9 SsrA-binding protein compare
BWI76_RS18165 -2.4 -0.7 NUDIX pyrophosphatase compare
BWI76_RS09195 -2.4 -0.8 N-acetyltransferase compare
BWI76_RS21345 -2.3 -1.7 sigma-E factor regulatory protein RseB compare
BWI76_RS20145 -2.3 -1.0 NADH-quinone oxidoreductase subunit K compare
BWI76_RS21370 -2.3 -0.7 ATP-dependent RNA helicase SrmB compare
BWI76_RS22420 -2.3 -1.5 LacI family transcriptional regulator compare
BWI76_RS01080 -2.3 -5.6 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS09970 -2.2 -0.7 porin OmpA compare
BWI76_RS20880 -2.2 -1.6 esterase compare
BWI76_RS11980 -2.2 -1.2 DeoR family transcriptional regulator compare
BWI76_RS20155 -2.2 -1.1 NADH-quinone oxidoreductase subunit I compare
BWI76_RS21350 -2.2 -1.6 anti-RNA polymerase sigma factor SigE compare
BWI76_RS07385 -2.1 -2.2 short-chain dehydrogenase/reductase SDR compare
BWI76_RS24580 -2.1 -1.5 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS13820 -2.1 -1.1 hypothetical protein compare
BWI76_RS20150 -2.1 -1.6 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS03080 -2.1 -2.8 (Fe-S)-cluster assembly protein compare
BWI76_RS18815 -2.1 -1.2 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS00240 -2.1 -0.9 FMN-binding protein MioC compare
BWI76_RS15990 -2.0 -3.1 serine protease compare
BWI76_RS06395 -2.0 -2.8 tRNA 4-thiouridine(8) synthase ThiI compare
BWI76_RS26150 -2.0 -1.7 molecular chaperone Hsp33 compare
BWI76_RS11155 -2.0 -1.8 penicillin-binding protein activator LpoB compare
BWI76_RS00440 -1.9 -0.9 CopG family transcriptional regulator compare
BWI76_RS22975 -1.9 -2.0 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
BWI76_RS27820 -1.9 -0.6 ilvB operon leader peptide IvbL compare
BWI76_RS20280 -1.9 -2.1 phosphodiesterase compare
BWI76_RS17045 -1.9 -1.1 hypothetical protein compare
BWI76_RS02855 -1.9 -2.2 cytochrome B562 compare
BWI76_RS09730 -1.9 -0.6 pyruvate formate lyase 1-activating protein compare
BWI76_RS26760 -1.9 -3.7 C4-dicarboxylate transport protein DctA (from data) compare
BWI76_RS17775 -1.9 -1.6 hypothetical protein compare
BWI76_RS19840 -1.9 -0.4 hypothetical protein compare
BWI76_RS23885 -1.9 -0.6 2-octaprenylphenol hydroxylase compare
BWI76_RS12870 -1.8 -1.4 putative phytanoyl-CoA dioxygenase compare
BWI76_RS01090 -1.8 -2.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS14980 -1.8 -0.9 hypothetical protein compare
BWI76_RS08430 -1.8 -2.2 succinate--CoA ligase subunit alpha compare
BWI76_RS19870 -1.8 -1.9 malate:quinone oxidoreductase compare
BWI76_RS01110 -1.8 -2.5 TDP-fucosamine acetyltransferase compare
BWI76_RS16485 -1.8 -0.9 ribonuclease T compare
BWI76_RS01565 -1.8 -1.2 NADH pyrophosphatase compare
BWI76_RS23360 -1.8 -0.8 diaminopimelate decarboxylase compare
BWI76_RS19035 -1.7 -4.9 dTDP-rhamnosyl transferase compare
BWI76_RS15435 -1.7 -0.7 hypothetical protein compare
BWI76_RS08360 -1.7 -2.1 LamB/YcsF family protein compare
BWI76_RS21375 -1.7 -0.5 autonomous glycyl radical cofactor GrcA compare
BWI76_RS00180 -1.7 -0.5 F0F1 ATP synthase subunit epsilon compare
BWI76_RS08605 -1.7 -1.0 phosphoglyceromutase compare
BWI76_RS24605 -1.7 -3.6 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS14730 -1.7 -3.3 4-oxalocrotonate tautomerase compare
BWI76_RS20135 -1.7 -1.3 NADH-quinone oxidoreductase subunit M compare
BWI76_RS02530 -1.7 -0.8 tRNA dimethylallyltransferase compare
BWI76_RS17310 -1.6 -2.4 AsnC family transcriptional regulator compare
BWI76_RS20170 -1.6 -2.7 NADH-quinone oxidoreductase subunit F compare
BWI76_RS20130 -1.6 -2.0 NADH-quinone oxidoreductase subunit N compare
BWI76_RS05840 -1.6 -1.7 glutamate 5-kinase compare
BWI76_RS24885 -1.6 -0.6 PTS galactitol transporter subunit IIB compare
BWI76_RS25070 -1.6 -0.8 hypothetical protein compare
BWI76_RS02200 -1.5 -2.6 phosphonate C-P lyase system protein PhnL compare
BWI76_RS07070 -1.5 -2.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS27940 -1.5 -1.0 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BWI76_RS15110 -1.5 -1.0 putative excinuclease ABC subunit A compare
BWI76_RS16275 -1.5 -1.8 fumarate hydratase FumA compare
BWI76_RS04645 -1.5 -2.0 3-dehydroquinase compare
BWI76_RS05120 -1.5 -3.1 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS26095 -1.5 -0.5 shikimate kinase compare
BWI76_RS05785 -1.5 -2.5 CI repressor compare
BWI76_RS24850 -1.5 -3.0 DeoR family transcriptional regulator compare
BWI76_RS05710 -1.5 -1.8 TetR family transcriptional regulator compare
BWI76_RS21565 -1.5 -0.5 outer membrane protein assembly factor BamE compare
BWI76_RS13480 -1.5 -0.6 XRE family transcriptional regulator compare
BWI76_RS27385 -1.5 -3.7 orotate phosphoribosyltransferase compare
BWI76_RS06205 -1.5 -1.6 recombination-associated protein RdgC compare
BWI76_RS14305 -1.5 -2.3 metallophosphoesterase compare
BWI76_RS00095 -1.4 -1.9 DNA-binding transcriptional regulator compare
BWI76_RS19470 -1.4 -1.1 DNA-binding response regulator compare
BWI76_RS13970 -1.4 -1.3 ABC transporter compare
BWI76_RS11180 -1.4 -2.3 hypothetical protein compare
BWI76_RS05965 -1.4 -1.4 hypothetical protein compare
BWI76_RS25065 -1.4 -1.7 polyribonucleotide nucleotidyltransferase compare
BWI76_RS19040 -1.4 -2.9 hypothetical protein compare
BWI76_RS10935 -1.4 -2.6 glucan biosynthesis glucosyltransferase H compare
BWI76_RS18415 -1.4 -1.1 very short patch repair endonuclease compare
BWI76_RS01170 -1.4 -1.7 uroporphyrinogen-III C-methyltransferase compare
BWI76_RS03925 -1.4 -2.5 N-acetyltransferase GCN5 compare
BWI76_RS02880 -1.4 -1.4 membrane protein compare
BWI76_RS06520 -1.4 -2.0 trigger factor compare
BWI76_RS21475 -1.3 -1.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS18905 -1.3 -1.1 putrescine/spermidine ABC transporter compare
BWI76_RS14975 -1.3 -1.4 glyoxalase-like domain protein compare
BWI76_RS24900 -1.3 -0.6 DeoR family transcriptional regulator compare
BWI76_RS17620 -1.3 -2.0 ABC transporter ATP-binding protein compare
BWI76_RS08370 -1.3 -1.6 membrane protein compare
BWI76_RS17110 -1.3 -1.4 vitamin B12 ABC transporter permease BtuC compare
BWI76_RS13715 -1.3 -1.6 2-chlorobenzoate 1 2-dioxygenase electron transfer subunit compare
BWI76_RS06530 -1.3 -2.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS15115 -1.3 -0.9 MFS transporter compare
BWI76_RS09860 -1.3 -1.7 hypothetical protein compare
BWI76_RS05450 -1.3 -0.4 ribonuclease HI compare
BWI76_RS22840 -1.3 -0.9 transposase compare
BWI76_RS13610 -1.3 -2.2 sugar transporter compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL across organisms