Experiment set14IT054 for Shewanella oneidensis MR-1

Ferric citrate electron acceptor; ground control

Group: ground_control
Media: SBM_defined + Sodium D,L-Lactate (20 mM) + Ferric citrate (10 mM), pH=7.2
Culturing: MR1_ML3b, Bioserve FPA, Anaerobic, at 30 (C)
By: Michael Dougherty on 5-Sep-18

Specific Phenotypes

For 10 genes in this experiment

For ground_control Sodium D,L-Lactate in Shewanella oneidensis MR-1

For ground_control Sodium D,L-Lactate across organisms

SEED Subsystems

Subsystem	#Specific
ABC transporter tungstate (TC 3.A.1.6.2)	3
Cobalt-zinc-cadmium resistance	1
Deoxyribose and Deoxynucleoside Catabolism	1
Formate hydrogenase	1
Glycine cleavage system	1
Molybdenum cofactor biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pentose phosphate pathway

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
2-deoxy-α-D-ribose 1-phosphate degradation	3	3	1
2-deoxy-D-ribose degradation I	3	2	1
superpathway of pyrimidine deoxyribonucleosides degradation	6	6	1
superpathway of purine deoxyribonucleosides degradation	7	7	1