Experiment set14IT054 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS08120 +2.7 5.8 cobalt transporter compare
BWI76_RS01225 +2.6 9.5 magnesium transporter CorA compare
BWI76_RS25920 +2.5 2.9 peptidylprolyl isomerase compare
BWI76_RS21540 +2.3 6.7 membrane protein compare
BWI76_RS01350 +2.3 1.4 NAD(P)H-flavin reductase compare
BWI76_RS01585 +2.0 4.1 transcriptional regulator compare
BWI76_RS08380 +2.0 1.4 endonuclease VIII compare
BWI76_RS12680 +2.0 3.0 oxidoreductase compare
BWI76_RS11810 +1.9 2.6 outer membrane protein OmpW compare
BWI76_RS00865 +1.9 3.5 DNA-binding transcriptional regulator OxyR compare
BWI76_RS00025 +1.9 1.8 hypothetical protein compare
BWI76_RS23250 +1.8 2.7 hypothetical protein compare
BWI76_RS14775 +1.7 3.2 creatinine amidohydrolase compare
BWI76_RS23555 +1.7 2.3 type 1 major fimbrial subunit precursor compare
BWI76_RS11815 +1.6 1.5 hypothetical protein compare
BWI76_RS03105 +1.6 1.3 myo-inosose-2 dehydratase compare
BWI76_RS19495 +1.6 1.2 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS21565 +1.5 1.1 outer membrane protein assembly factor BamE compare
BWI76_RS17675 +1.5 2.0 hypothetical protein compare
BWI76_RS06335 +1.4 2.9 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS25870 +1.4 1.6 elongation factor Tu compare
BWI76_RS02180 +1.4 1.3 hypothetical protein compare
BWI76_RS15975 +1.4 0.9 hypothetical protein compare
BWI76_RS08720 +1.4 2.0 imidazolonepropionase compare
BWI76_RS24110 +1.4 1.3 YggU family protein compare
BWI76_RS08825 +1.3 2.3 cyclic pyranopterin monophosphate synthase MoaC compare
BWI76_RS11170 +1.3 1.2 hypothetical protein compare
BWI76_RS17190 +1.3 1.4 TonB system transport protein TonB compare
BWI76_RS14930 +1.3 2.1 hypothetical protein compare
BWI76_RS20795 +1.3 1.4 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS25980 +1.3 1.7 hypothetical protein compare
BWI76_RS25485 +1.3 1.8 septum formation protein Maf compare
BWI76_RS26285 +1.3 4.2 glycerophosphodiester phosphodiesterase compare
BWI76_RS19360 +1.3 2.4 glucose dehydrogenase compare
BWI76_RS24720 +1.2 1.8 hypothetical protein compare
BWI76_RS16805 +1.2 2.4 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS20675 +1.2 3.5 GMP synthase compare
BWI76_RS04060 +1.2 1.5 hypothetical protein compare
BWI76_RS12855 +1.1 1.8 enamine deaminase RidA compare
BWI76_RS01010 +1.1 3.9 uridine phosphorylase compare
BWI76_RS17525 +1.1 1.1 XshC-Cox1-family protein compare
BWI76_RS19240 +1.1 1.6 ABC transporter substrate-binding protein compare
BWI76_RS23195 +1.1 2.9 ethanolamine utilization protein EutP compare
BWI76_RS06400 +1.1 1.7 oxidative-stress-resistance chaperone compare
BWI76_RS15945 +1.1 3.7 voltage-gated ClC-type chloride channel ClcB compare
BWI76_RS03025 +1.1 2.3 N-acetyltransferase compare
BWI76_RS20765 +1.1 2.4 ethanolamine ammonia lyase large subunit compare
BWI76_RS19585 +1.1 1.4 gentisate 1,2-dioxygenase compare
BWI76_RS13320 +1.1 1.6 putative LpxA-like enzyme compare
BWI76_RS15260 +1.1 1.0 hypothetical protein compare
BWI76_RS18135 +1.1 2.9 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS13090 +1.1 2.2 phenylacetate-CoA oxygenase subunit PaaA compare
BWI76_RS07510 +1.1 1.6 hypothetical protein compare
BWI76_RS21245 +1.1 1.3 nitrogen regulatory protein P-II compare
BWI76_RS26280 +1.1 2.4 hypothetical protein compare
BWI76_RS08250 +1.1 3.5 tricarballylate utilization protein B compare
BWI76_RS12460 +1.1 1.2 envelope stress response membrane protein PspC compare
BWI76_RS08855 +1.0 2.0 endonuclease/exonuclease/phosphatase compare
BWI76_RS03310 +1.0 3.0 AraC family transcriptional regulator compare
BWI76_RS11260 +1.0 1.5 hypothetical protein compare
BWI76_RS10045 +1.0 4.9 23S rRNA (cytosine(1962)-C(5))-methyltransferase compare
BWI76_RS13215 +1.0 1.2 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS14670 +1.0 1.3 hypothetical protein compare
BWI76_RS21485 +1.0 4.1 DUF4154 domain-containing protein compare
BWI76_RS07765 +1.0 1.4 thioesterase compare
BWI76_RS13590 +1.0 1.7 hypothetical protein compare
BWI76_RS09690 +1.0 2.0 dimethyl sulfoxide reductase compare
BWI76_RS04210 +1.0 2.4 hypothetical protein compare
BWI76_RS01565 +1.0 1.5 NADH pyrophosphatase compare
BWI76_RS06200 +1.0 2.1 hypothetical protein compare
BWI76_RS03970 +1.0 4.1 PTS mannose/fructose/sorbose family transporter subunit IID compare
BWI76_RS12575 +1.0 1.9 FAD-dependent oxidoreductase compare
BWI76_RS16095 +1.0 2.8 thiamine biosynthesis protein ApbE compare
BWI76_RS17375 +1.0 1.5 nitrate ABC transporter, permease protein compare
BWI76_RS27735 +1.0 1.9 hypothetical protein compare
BWI76_RS05655 +1.0 2.2 hypothetical protein compare
BWI76_RS15090 +1.0 2.3 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
BWI76_RS17420 +1.0 1.9 hypothetical protein compare
BWI76_RS12755 +1.0 1.7 hypothetical protein compare
BWI76_RS17945 +1.0 1.1 hypothetical protein compare
BWI76_RS05800 +1.0 1.8 phage transcriptional activator, Ogr/delta compare
BWI76_RS01840 +1.0 2.6 maltose ABC transporter, ATPase component (MalK) (from data) compare
BWI76_RS11125 +1.0 1.3 metal-dependent hydrolase compare
BWI76_RS21505 +1.0 0.9 hypothetical protein compare
BWI76_RS07160 +1.0 2.0 MBL fold hydrolase compare
BWI76_RS02450 +0.9 2.6 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
BWI76_RS04570 +0.9 2.7 RNA polymerase-associated protein RapA compare
BWI76_RS09015 +0.9 3.0 aldo/keto reductase compare
BWI76_RS22270 +0.9 2.5 nickel transporter compare
BWI76_RS20960 +0.9 2.5 ROK family protein compare
BWI76_RS23705 +0.9 2.5 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS00100 +0.9 2.7 hypothetical protein compare
BWI76_RS11880 +0.9 2.7 23S rRNA pseudouridylate synthase B compare
BWI76_RS07265 +0.9 1.9 ABC transporter ATP-binding protein compare
BWI76_RS16750 +0.9 3.7 acetolactate synthase compare
BWI76_RS15245 +0.9 3.6 dihydrodipicolinate synthase family protein compare
BWI76_RS07985 +0.9 0.7 fluoride ion transporter CrcB compare
BWI76_RS11520 +0.9 0.7 hypothetical protein compare
BWI76_RS11010 +0.9 1.8 30S ribosomal protein S5 alanine N-acetyltransferase compare
BWI76_RS02045 +0.9 2.1 LysR family transcriptional regulator compare
BWI76_RS12605 +0.9 2.4 hypothetical protein compare
BWI76_RS10290 +0.9 2.2 transcriptional regulator compare
BWI76_RS06540 +0.9 1.2 DNA-binding protein HU-beta compare
BWI76_RS00290 +0.9 4.5 Ribokinase (EC 2.7.1.15) (from data) compare
BWI76_RS08615 +0.9 2.5 galactokinase compare
BWI76_RS22190 +0.9 2.5 hypothetical protein compare
BWI76_RS15200 +0.9 2.3 glutaminase compare
BWI76_RS18810 +0.9 2.0 nitrogenase iron protein compare
BWI76_RS08820 +0.9 2.6 molybdenum cofactor biosynthesis protein compare
BWI76_RS16760 +0.9 1.8 lipase compare
BWI76_RS23015 +0.9 1.2 cobalt transporter ATP-binding subunit compare
BWI76_RS00475 +0.9 2.9 sulfurtransferase FdhD compare
BWI76_RS03825 +0.9 1.5 4-hydroxyphenylacetate 3-monooxygenase compare
BWI76_RS22420 +0.9 1.3 LacI family transcriptional regulator compare
BWI76_RS25000 +0.9 1.0 malonate decarboxylase acyl carrier protein compare
BWI76_RS02695 +0.9 2.4 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS18005 +0.9 2.0 hypothetical protein compare
BWI76_RS15265 +0.9 2.6 hypothetical protein compare
BWI76_RS16315 +0.9 0.7 SirA-like protein compare
BWI76_RS14680 +0.9 1.5 SefF compare
BWI76_RS11040 +0.9 1.8 ribonuclease E compare
BWI76_RS01795 +0.9 1.1 hypothetical protein compare
BWI76_RS02800 +0.9 2.8 ABC transporter compare
BWI76_RS27455 +0.9 1.2 DUF805 domain-containing protein compare
BWI76_RS16000 +0.8 1.0 multidrug transporter subunit MdtI compare
BWI76_RS04200 +0.8 2.3 phosphoglycerate mutase GpmB compare
BWI76_RS00330 +0.8 4.5 molybdenum cofactor guanylyltransferase compare
BWI76_RS01240 +0.8 3.2 phospholipase A compare
BWI76_RS07710 +0.8 2.2 invasin-like protein compare
BWI76_RS16685 +0.8 0.9 peptide ABC transporter permease compare
BWI76_RS00370 +0.8 1.9 GTPase-activating protein compare
BWI76_RS17400 +0.8 0.7 transporter compare
BWI76_RS10320 +0.8 2.2 alpha-glucosidase/alpha-galactosidase compare
BWI76_RS26015 +0.8 1.6 DUF2559 domain-containing protein compare
BWI76_RS16055 +0.8 2.3 malonate decarboxylase subunit epsilon compare
BWI76_RS03515 +0.8 1.3 hypothetical protein compare
BWI76_RS04625 +0.8 3.1 glucose uptake inhibitor SgrT compare
BWI76_RS07955 +0.8 2.1 nucleoside diphosphate kinase regulator compare
BWI76_RS12820 +0.8 1.5 NAD-dependent phenylacetaldehyde dehydrogenase compare
BWI76_RS19205 +0.8 2.0 putative proline iminopeptidase compare
BWI76_RS15185 +0.8 1.6 N-acetyltransferase compare
BWI76_RS00115 +0.8 3.7 6-phosphogluconate phosphatase compare
BWI76_RS04395 +0.8 2.3 putative HTH-type transcriptional regulator compare
BWI76_RS19530 +0.8 3.5 YIP1 family protein compare
BWI76_RS11780 +0.8 2.0 2-deoxyglucose-6-phosphatase compare
BWI76_RS12620 +0.8 2.0 2-nitropropane dioxygenase compare
BWI76_RS05640 +0.8 1.7 GntR family transcriptional regulator compare
BWI76_RS01285 +0.8 3.5 amino acid ABC transporter substrate-binding protein compare
BWI76_RS10590 +0.8 3.9 class V aminotransferase compare
BWI76_RS13380 +0.8 1.0 hypothetical protein compare
BWI76_RS11035 +0.8 1.5 putative LysR-family transcriptional regulator compare
BWI76_RS14170 +0.8 1.4 hypothetical protein compare
BWI76_RS17565 +0.8 1.4 hypothetical protein compare
BWI76_RS06130 +0.8 1.7 extensin family protein compare
BWI76_RS10840 +0.8 3.0 membrane protein compare
BWI76_RS09485 +0.8 1.6 23S rRNA (uracil(747)-C(5))-methyltransferase compare
BWI76_RS24035 +0.8 1.5 hypothetical protein compare
BWI76_RS23505 +0.8 5.4 ferrous iron transporter B compare
BWI76_RS14075 +0.8 0.6 TetR family transcriptional regulator compare
BWI76_RS04975 +0.8 2.9 PTS fructose subfamily transporter subunit IIA compare
BWI76_RS04840 +0.8 2.1 prepilin peptidase-dependent pilin compare
BWI76_RS18385 +0.8 0.9 hypothetical protein compare
BWI76_RS11335 +0.8 0.9 tautomerase compare
BWI76_RS14000 +0.8 3.3 glutamine amidotransferase compare
BWI76_RS14825 +0.8 1.1 dienelactone hydrolase family protein compare
BWI76_RS14410 +0.8 1.3 hypothetical protein compare
BWI76_RS00690 +0.8 2.5 transcriptional activator RhaS compare
BWI76_RS23875 +0.8 1.5 glycine cleavage system protein H compare
BWI76_RS10815 +0.8 1.5 iron permease compare
BWI76_RS20970 +0.8 1.0 phosphoribosylglycinamide formyltransferase compare
BWI76_RS27170 +0.8 1.9 MltR family transcriptional regulator compare
BWI76_RS09750 +0.8 2.4 DUF421 domain-containing protein compare
BWI76_RS19195 +0.8 1.6 nickel ABC transporter permease compare
BWI76_RS07285 +0.8 1.7 LysR family transcriptional regulator compare
BWI76_RS15410 +0.8 2.1 N-acetyltransferase compare
BWI76_RS01905 +0.8 1.5 envelope stress response protein PspG compare
BWI76_RS15925 +0.8 2.2 dimethyl sulfoxide reductase subunit A compare
BWI76_RS07595 +0.8 1.2 putative oxidoreductase compare
BWI76_RS11875 +0.8 2.1 hypothetical protein compare
BWI76_RS11605 +0.8 3.6 DNA topoisomerase III compare
BWI76_RS16035 +0.8 1.2 biotin-independent malonate decarboxylase subunit beta compare
BWI76_RS18725 +0.8 2.0 hypothetical protein compare
BWI76_RS27850 +0.8 2.8 DNA-binding transcriptional regulator DsdC compare
BWI76_RS22865 +0.8 3.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BWI76_RS10755 +0.8 0.9 pyrimidine utilization flavin reductase protein F compare
BWI76_RS25270 +0.8 1.4 ribosome hibernation promoting factor compare
BWI76_RS20775 +0.8 2.2 ethanolamine utilization protein EutH compare
BWI76_RS15315 +0.8 1.6 DNA-binding protein compare
BWI76_RS16140 +0.8 1.7 3-oxoadipate CoA-transferase compare
BWI76_RS16675 +0.8 1.4 ABC transporter compare
BWI76_RS06910 +0.8 1.1 transcriptional regulator compare
BWI76_RS19880 +0.8 2.0 magnesium transporter compare
BWI76_RS23300 +0.8 2.7 YgdI/YgdR family lipoprotein compare
BWI76_RS11680 +0.8 2.1 succinylglutamate-semialdehyde dehydrogenase compare
BWI76_RS00295 +0.8 2.7 transcriptional regulator RbsR compare
BWI76_RS01725 +0.8 3.0 PTS mannose/fructose/sorbose family transporter subunit IID compare
BWI76_RS08215 +0.8 1.4 glucosamine-6-phosphate deaminase compare
BWI76_RS04095 +0.8 1.5 dUMP phosphatase compare
BWI76_RS24810 +0.8 2.1 hypothetical protein compare
BWI76_RS18390 +0.8 1.1 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL across organisms