Experiment set14IT053 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS18940 -6.6 -5.4 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS25700 -5.6 -6.6 heavy metal-responsive transcriptional regulator compare
BWI76_RS07065 -5.4 -7.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS21265 -5.3 -13.8 phosphoribosylformylglycinamidine synthase compare
BWI76_RS04250 -5.3 -7.4 homoserine kinase compare
BWI76_RS00850 -5.3 -11.8 acetylglutamate kinase compare
BWI76_RS01610 -5.2 -10.5 phosphoribosylamine--glycine ligase compare
BWI76_RS23220 -5.2 -8.7 amino-acid N-acetyltransferase compare
BWI76_RS18935 -5.1 -8.9 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS11965 -5.0 -3.8 orotidine-5'-phosphate decarboxylase compare
BWI76_RS04245 -5.0 -16.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS04255 -4.9 -11.0 threonine synthase compare
BWI76_RS18930 -4.9 -5.1 histidinol-phosphate transaminase compare
BWI76_RS11850 -4.9 -10.0 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS01095 -4.8 -2.3 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS00845 -4.8 -12.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS00805 -4.8 -5.5 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS26425 -4.7 -8.8 zinc/cadmium/mercury/lead-transporting ATPase compare
BWI76_RS18925 -4.7 -5.1 histidinol dehydrogenase compare
BWI76_RS16965 -4.7 -1.9 murein lipoprotein compare
BWI76_RS26460 -4.7 -3.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS27385 -4.7 -7.2 orotate phosphoribosyltransferase compare
BWI76_RS09615 -4.7 -2.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS27915 -4.7 -2.2 YceK/YidQ family lipoprotein compare
BWI76_RS26455 -4.7 -1.8 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS20355 -4.6 -3.4 colicin V production protein compare
BWI76_RS26665 -4.6 -2.7 DNA-binding response regulator compare
BWI76_RS05260 -4.5 -1.3 chaperone compare
BWI76_RS02995 -4.5 -8.6 aspartate carbamoyltransferase compare
BWI76_RS09670 -4.5 -3.3 recombination factor protein RarA compare
BWI76_RS04470 -4.5 -10.0 carbamoyl phosphate synthase large subunit compare
BWI76_RS11855 -4.5 -12.6 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS23365 -4.5 -4.0 LysR family transcriptional regulator compare
BWI76_RS10990 -4.4 -1.9 dihydroorotase compare
BWI76_RS11840 -4.3 -5.0 tryptophan synthase subunit alpha compare
BWI76_RS01615 -4.3 -11.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS21350 -4.3 -4.0 anti-RNA polymerase sigma factor SigE compare
BWI76_RS20965 -4.3 -3.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS20350 -4.3 -5.4 amidophosphoribosyltransferase compare
BWI76_RS00975 -4.3 -10.9 dihydroxy-acid dehydratase compare
BWI76_RS00855 -4.2 -8.6 argininosuccinate lyase compare
BWI76_RS27390 -4.2 -4.6 ribonuclease PH compare
BWI76_RS20390 -4.2 -4.0 erythronate-4-phosphate dehydrogenase compare
BWI76_RS23265 -4.2 -1.6 hypothetical protein compare
BWI76_RS04305 -4.1 -1.1 molecular chaperone DnaJ compare
BWI76_RS03010 -4.1 -10.5 ornithine carbamoyltransferase compare
BWI76_RS08520 -4.1 -1.9 colicin transporter TolQ compare
BWI76_RS20895 -4.1 -5.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS18950 -4.0 -5.3 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS04465 -4.0 -5.7 carbamoyl-phosphate synthase small subunit compare
BWI76_RS05840 -4.0 -2.7 glutamate 5-kinase compare
BWI76_RS00875 -4.0 -4.7 DNA-binding transcriptional regulator FabR compare
BWI76_RS17975 -3.9 -3.9 tail-specific protease compare
BWI76_RS01655 -3.9 -8.9 homoserine O-succinyltransferase compare
BWI76_RS11860 -3.9 -8.3 anthranilate synthase component I compare
BWI76_RS07070 -3.9 -5.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS22760 -3.8 -7.4 sulfite reductase subunit beta compare
BWI76_RS04525 -3.8 -1.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS00980 -3.8 -12.6 PLP-dependent threonine dehydratase compare
BWI76_RS00785 -3.8 -6.7 cystathionine gamma-synthase compare
BWI76_RS00990 -3.8 -10.6 ketol-acid reductoisomerase compare
BWI76_RS00835 -3.8 -11.8 phosphoenolpyruvate carboxylase compare
BWI76_RS09910 -3.7 -13.7 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS21450 -3.7 -2.0 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS24340 -3.7 -6.3 two-component sensor histidine kinase compare
BWI76_RS18920 -3.7 -2.9 ATP phosphoribosyltransferase compare
BWI76_RS18955 -3.7 -5.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS08385 -3.7 -2.0 citrate (Si)-synthase compare
BWI76_RS05015 -3.6 -2.0 transcriptional regulator compare
BWI76_RS04665 -3.6 -19.7 3-isopropylmalate dehydratase small subunit compare
BWI76_RS24285 -3.6 -9.0 cystathionine beta-lyase compare
BWI76_RS21165 -3.6 -1.4 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS25335 -3.5 -1.7 stringent starvation protein A compare
BWI76_RS25115 -3.5 -6.9 argininosuccinate synthase compare
BWI76_RS04675 -3.5 -5.9 3-isopropylmalate dehydrogenase compare
BWI76_RS22690 -3.5 -2.6 adenylyl-sulfate kinase compare
BWI76_RS01115 -3.5 -2.3 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS08530 -3.4 -1.3 protein TolA compare
BWI76_RS01135 -3.4 -4.8 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS04670 -3.4 -10.2 3-isopropylmalate dehydratase large subunit compare
BWI76_RS11845 -3.4 -1.8 tryptophan synthase subunit beta compare
BWI76_RS22755 -3.4 -3.9 phosphoadenosine phosphosulfate reductase compare
BWI76_RS21345 -3.3 -2.2 sigma-E factor regulatory protein RseB compare
BWI76_RS19770 -3.3 -1.3 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS05835 -3.3 -1.8 gamma-glutamyl-phosphate reductase compare
BWI76_RS25645 -3.3 -6.2 shikimate dehydrogenase compare
BWI76_RS08580 -3.2 -2.4 quinolinate synthetase compare
BWI76_RS01110 -3.2 -5.0 TDP-fucosamine acetyltransferase compare
BWI76_RS04680 -3.2 -12.6 2-isopropylmalate synthase compare
BWI76_RS22765 -3.2 -8.6 sulfite reductase subunit alpha compare
BWI76_RS02580 -3.2 -2.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS23920 -3.2 -1.8 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS06525 -3.1 -2.5 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS15975 -3.1 -0.8 hypothetical protein compare
BWI76_RS26390 -3.1 -6.5 cell division protein FtsX compare
BWI76_RS00720 -3.0 -1.6 DNA-binding response regulator compare
BWI76_RS09760 -3.0 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS00965 -3.0 -0.8 acetolactate synthase 2 small subunit compare
BWI76_RS04845 -3.0 -7.1 nicotinate-nucleotide pyrophosphorylase compare
BWI76_RS26730 -3.0 -7.7 inner membrane protein YhjD compare
BWI76_RS21475 -3.0 -2.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS13755 -3.0 -1.6 hypothetical protein compare
BWI76_RS21075 -3.0 -1.4 membrane protein compare
BWI76_RS07465 -2.9 -1.1 TetR family transcriptional regulator compare
BWI76_RS04990 -2.9 -6.1 pantoate--beta-alanine ligase compare
BWI76_RS04240 -2.9 -1.8 thr operon leader peptide compare
BWI76_RS25060 -2.9 -6.3 lipoprotein NlpI compare
BWI76_RS06535 -2.8 -1.9 endopeptidase La compare
BWI76_RS01800 -2.8 -1.9 glucose-6-phosphate isomerase compare
BWI76_RS21465 -2.8 -5.4 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS04685 -2.8 -6.8 putative leucine operon leader peptide compare
BWI76_RS19905 -2.8 -4.4 OmpK36 porin compare
BWI76_RS22090 -2.8 -2.0 transcriptional regulator compare
BWI76_RS12090 -2.8 -1.5 HNH endonuclease compare
BWI76_RS17980 -2.7 -3.2 RNA chaperone ProQ compare
BWI76_RS26620 -2.7 -0.7 Fe-S biogenesis protein NfuA compare
BWI76_RS09755 -2.7 -2.6 phosphoserine transaminase compare
BWI76_RS04160 -2.7 -3.4 phosphoserine phosphatase compare
BWI76_RS21580 -2.6 -1.2 SsrA-binding protein compare
BWI76_RS08535 -2.6 -1.2 translocation protein TolB compare
BWI76_RS08210 -2.6 -1.0 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS06530 -2.6 -6.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS01935 -2.6 -2.0 thiamin phosphate synthase compare
BWI76_RS15825 -2.5 -0.9 hypothetical protein compare
BWI76_RS26395 -2.5 -5.9 cell division protein FtsE compare
BWI76_RS02735 -2.5 -2.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS26670 -2.5 -7.4 two-component sensor histidine kinase compare
BWI76_RS26000 -2.5 -7.3 aspartate aminotransferase family protein compare
BWI76_RS01080 -2.5 -8.4 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS01275 -2.5 -6.0 LysR family transcriptional regulator compare
BWI76_RS22645 -2.5 -6.0 RNA polymerase sigma factor RpoS compare
BWI76_RS11440 -2.5 -1.1 hypothetical protein compare
BWI76_RS21360 -2.5 -6.9 L-aspartate oxidase compare
BWI76_RS10305 -2.4 -6.2 transposase compare
BWI76_RS10930 -2.4 -8.4 glucan biosynthesis protein G compare
BWI76_RS00240 -2.4 -1.3 FMN-binding protein MioC compare
BWI76_RS21370 -2.4 -0.9 ATP-dependent RNA helicase SrmB compare
BWI76_RS08495 -2.3 -3.8 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS01195 -2.3 -0.8 membrane protein compare
BWI76_RS21070 -2.3 -1.5 outer membrane protein assembly factor BamB compare
BWI76_RS00345 -2.3 -3.7 protein disulfide oxidoreductase DsbA compare
BWI76_RS22805 -2.3 -7.4 GTP diphosphokinase compare
BWI76_RS01220 -2.3 -5.8 DNA-dependent helicase II compare
BWI76_RS25315 -2.2 -12.1 glutamate synthase large subunit compare
BWI76_RS08525 -2.2 -1.7 colicin transporter compare
BWI76_RS19685 -2.2 -4.0 lysine transporter compare
BWI76_RS09970 -2.2 -0.8 porin OmpA compare
BWI76_RS00760 -2.1 -4.3 cell division protein FtsN compare
BWI76_RS20440 -2.1 -2.8 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS25320 -2.1 -9.6 glutamate synthase compare
BWI76_RS08760 -2.1 -4.8 biotin synthase compare
BWI76_RS02530 -2.1 -1.2 tRNA dimethylallyltransferase compare
BWI76_RS05075 -2.1 -0.8 type II secretion system protein GspG compare
BWI76_RS04645 -2.0 -3.1 3-dehydroquinase compare
BWI76_RS23360 -2.0 -1.0 diaminopimelate decarboxylase compare
BWI76_RS27235 -2.0 -11.4 murein hydrolase activator EnvC compare
BWI76_RS00390 -2.0 -7.2 two-component system sensor histidine kinase NtrB compare
BWI76_RS01900 -2.0 -3.5 tRNA-dihydrouridine synthase A compare
BWI76_RS20360 -2.0 -0.7 cell division protein DedD compare
BWI76_RS14305 -2.0 -4.2 metallophosphoesterase compare
BWI76_RS08020 -1.9 -4.0 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS23985 -1.9 -6.7 erythrose-4-phosphate dehydrogenase compare
BWI76_RS19840 -1.9 -0.5 hypothetical protein compare
BWI76_RS26470 -1.9 -3.8 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS17915 -1.9 -4.7 membrane protein compare
BWI76_RS00180 -1.9 -0.7 F0F1 ATP synthase subunit epsilon compare
BWI76_RS00960 -1.9 -4.5 acetolactate synthase 2 catalytic subunit compare
BWI76_RS06015 -1.9 -1.5 hypothetical protein compare
BWI76_RS13920 -1.9 -6.3 magnesium-translocating P-type ATPase compare
BWI76_RS09190 -1.8 -1.2 hypothetical protein compare
BWI76_RS01125 -1.8 -4.3 4-alpha-L-fucosyltransferase compare
BWI76_RS00385 -1.8 -7.1 nitrogen assimilation regulatory protein compare
BWI76_RS12145 -1.8 -1.4 hypothetical protein compare
BWI76_RS22700 -1.8 -3.4 sulfate adenylyltransferase subunit 2 compare
BWI76_RS11610 -1.8 -1.5 glutamate dehydrogenase compare
BWI76_RS10935 -1.8 -2.9 glucan biosynthesis glucosyltransferase H compare
BWI76_RS14300 -1.8 -1.9 hypothetical protein compare
BWI76_RS05555 -1.7 -2.2 Crl family RNA polymerase assembly factor compare
BWI76_RS14570 -1.7 -2.5 hypothetical protein compare
BWI76_RS12265 -1.7 -3.2 hypothetical protein compare
BWI76_RS12450 -1.7 -2.3 phage shock protein PspA compare
BWI76_RS07115 -1.7 -5.0 hypothetical protein compare
BWI76_RS14065 -1.7 -1.5 hypothetical protein compare
BWI76_RS04995 -1.7 -5.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
BWI76_RS04985 -1.7 -2.4 aspartate 1-decarboxylase compare
BWI76_RS27440 -1.7 -1.1 DNA helicase RecG compare
BWI76_RS01090 -1.7 -3.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS26095 -1.7 -0.6 shikimate kinase compare
BWI76_RS24605 -1.6 -4.3 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS24580 -1.6 -3.2 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS16315 -1.6 -1.0 SirA-like protein compare
BWI76_RS24900 -1.6 -0.8 DeoR family transcriptional regulator compare
BWI76_RS15195 -1.6 -1.3 DUF4186 domain-containing protein compare
BWI76_RS27225 -1.6 -1.8 rhodanese-like domain-containing protein compare
BWI76_RS11275 -1.6 -4.7 sensor protein PhoQ compare
BWI76_RS26775 -1.6 -3.6 endo-1,4-D-glucanase compare
BWI76_RS05005 -1.6 -1.8 polynucleotide adenylyltransferase compare
BWI76_RS25705 -1.6 -2.7 hypothetical protein compare
BWI76_RS20750 -1.6 -0.6 carboxysome structural protein EutK compare
BWI76_RS01385 -1.5 -1.7 potassium transporter compare


Specific Phenotypes

For 3 genes in this experiment

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL across organisms