Experiment set14IT050 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS18930 -8.8 -4.5 histidinol-phosphate transaminase compare
BWI76_RS11965 -7.2 -4.1 orotidine-5'-phosphate decarboxylase compare
BWI76_RS20965 -6.4 -4.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS20350 -6.0 -7.6 amidophosphoribosyltransferase compare
BWI76_RS23365 -5.9 -3.2 LysR family transcriptional regulator compare
BWI76_RS11840 -5.7 -2.5 tryptophan synthase subunit alpha compare
BWI76_RS23220 -5.6 -8.6 amino-acid N-acetyltransferase compare
BWI76_RS04470 -5.6 -7.7 carbamoyl phosphate synthase large subunit compare
BWI76_RS26425 -5.5 -8.3 zinc/cadmium/mercury/lead-transporting ATPase compare
BWI76_RS02995 -5.4 -8.2 aspartate carbamoyltransferase compare
BWI76_RS18925 -5.4 -5.5 histidinol dehydrogenase compare
BWI76_RS25700 -5.2 -6.7 heavy metal-responsive transcriptional regulator compare
BWI76_RS18940 -5.2 -5.3 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS08385 -5.0 -2.4 citrate (Si)-synthase compare
BWI76_RS18935 -4.9 -9.1 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS00845 -4.9 -11.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS01615 -4.9 -11.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS26460 -4.8 -3.3 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS21265 -4.7 -17.2 phosphoribosylformylglycinamidine synthase compare
BWI76_RS04250 -4.7 -9.8 homoserine kinase compare
BWI76_RS18955 -4.6 -5.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS22755 -4.6 -3.2 phosphoadenosine phosphosulfate reductase compare
BWI76_RS05260 -4.6 -1.4 chaperone compare
BWI76_RS20895 -4.6 -5.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS20355 -4.5 -3.8 colicin V production protein compare
BWI76_RS08580 -4.5 -4.9 quinolinate synthetase compare
BWI76_RS04255 -4.5 -11.9 threonine synthase compare
BWI76_RS25115 -4.5 -8.5 argininosuccinate synthase compare
BWI76_RS07070 -4.5 -4.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS27390 -4.5 -5.3 ribonuclease PH compare
BWI76_RS10990 -4.4 -2.0 dihydroorotase compare
BWI76_RS04670 -4.4 -11.5 3-isopropylmalate dehydratase large subunit compare
BWI76_RS04245 -4.3 -16.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS00835 -4.3 -14.2 phosphoenolpyruvate carboxylase compare
BWI76_RS04675 -4.3 -7.4 3-isopropylmalate dehydrogenase compare
BWI76_RS23265 -4.3 -1.8 hypothetical protein compare
BWI76_RS01610 -4.3 -6.7 phosphoribosylamine--glycine ligase compare
BWI76_RS00975 -4.3 -13.5 dihydroxy-acid dehydratase compare
BWI76_RS07065 -4.2 -10.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS08520 -4.2 -2.1 colicin transporter TolQ compare
BWI76_RS04665 -4.2 -20.5 3-isopropylmalate dehydratase small subunit compare
BWI76_RS24285 -4.1 -9.8 cystathionine beta-lyase compare
BWI76_RS26455 -4.1 -2.4 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS09910 -4.1 -15.4 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS26000 -4.0 -10.9 aspartate aminotransferase family protein compare
BWI76_RS00875 -4.0 -4.7 DNA-binding transcriptional regulator FabR compare
BWI76_RS00990 -4.0 -14.1 ketol-acid reductoisomerase compare
BWI76_RS00850 -4.0 -7.1 acetylglutamate kinase compare
BWI76_RS09760 -3.9 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS27385 -3.9 -8.2 orotate phosphoribosyltransferase compare
BWI76_RS04685 -3.9 -11.5 putative leucine operon leader peptide compare
BWI76_RS11850 -3.8 -9.5 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS18920 -3.8 -3.4 ATP phosphoribosyltransferase compare
BWI76_RS18950 -3.8 -4.2 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS00785 -3.8 -7.6 cystathionine gamma-synthase compare
BWI76_RS21350 -3.8 -3.5 anti-RNA polymerase sigma factor SigE compare
BWI76_RS04465 -3.8 -5.5 carbamoyl-phosphate synthase small subunit compare
BWI76_RS11860 -3.8 -12.8 anthranilate synthase component I compare
BWI76_RS11845 -3.7 -1.2 tryptophan synthase subunit beta compare
BWI76_RS21070 -3.7 -1.9 outer membrane protein assembly factor BamB compare
BWI76_RS05015 -3.7 -2.2 transcriptional regulator compare
BWI76_RS00855 -3.7 -9.0 argininosuccinate lyase compare
BWI76_RS11855 -3.7 -8.1 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS21565 -3.7 -1.1 outer membrane protein assembly factor BamE compare
BWI76_RS21475 -3.6 -3.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS01125 -3.6 -5.5 4-alpha-L-fucosyltransferase compare
BWI76_RS25645 -3.6 -6.0 shikimate dehydrogenase compare
BWI76_RS25335 -3.6 -1.8 stringent starvation protein A compare
BWI76_RS21235 -3.6 -1.0 hypothetical protein compare
BWI76_RS20390 -3.6 -3.7 erythronate-4-phosphate dehydrogenase compare
BWI76_RS22765 -3.6 -10.2 sulfite reductase subunit alpha compare
BWI76_RS08530 -3.5 -1.4 protein TolA compare
BWI76_RS17980 -3.5 -4.1 RNA chaperone ProQ compare
BWI76_RS04240 -3.5 -1.6 thr operon leader peptide compare
BWI76_RS04845 -3.5 -7.1 nicotinate-nucleotide pyrophosphorylase compare
BWI76_RS16965 -3.5 -2.5 murein lipoprotein compare
BWI76_RS03010 -3.4 -5.6 ornithine carbamoyltransferase compare
BWI76_RS00805 -3.4 -4.4 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS05835 -3.3 -1.9 gamma-glutamyl-phosphate reductase compare
BWI76_RS23920 -3.3 -2.1 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS04680 -3.3 -11.8 2-isopropylmalate synthase compare
BWI76_RS21465 -3.3 -2.8 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS05840 -3.3 -3.1 glutamate 5-kinase compare
BWI76_RS27425 -3.2 -1.6 DNA-directed RNA polymerase subunit omega compare
BWI76_RS22760 -3.2 -6.0 sulfite reductase subunit beta compare
BWI76_RS22625 -3.2 -1.3 transcriptional regulator compare
BWI76_RS08525 -3.1 -1.4 colicin transporter compare
BWI76_RS21360 -3.1 -11.9 L-aspartate oxidase compare
BWI76_RS01655 -3.1 -7.1 homoserine O-succinyltransferase compare
BWI76_RS00965 -3.1 -0.9 acetolactate synthase 2 small subunit compare
BWI76_RS01110 -3.0 -5.0 TDP-fucosamine acetyltransferase compare
BWI76_RS00980 -3.0 -12.8 PLP-dependent threonine dehydratase compare
BWI76_RS06525 -3.0 -4.1 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS09755 -3.0 -2.0 phosphoserine transaminase compare
BWI76_RS01800 -3.0 -2.0 glucose-6-phosphate isomerase compare
BWI76_RS16490 -2.9 -1.5 glutaredoxin compare
BWI76_RS06535 -2.9 -2.0 endopeptidase La compare
BWI76_RS19905 -2.8 -4.8 OmpK36 porin compare
BWI76_RS12090 -2.8 -1.7 HNH endonuclease compare
BWI76_RS01115 -2.8 -2.2 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS16360 -2.8 -1.1 electron transport complex subunit RsxB compare
BWI76_RS17975 -2.8 -4.1 tail-specific protease compare
BWI76_RS08535 -2.7 -1.3 translocation protein TolB compare
BWI76_RS14300 -2.7 -2.7 hypothetical protein compare
BWI76_RS26390 -2.7 -9.6 cell division protein FtsX compare
BWI76_RS09640 -2.7 -1.8 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS01275 -2.6 -10.1 LysR family transcriptional regulator compare
BWI76_RS15825 -2.6 -1.0 hypothetical protein compare
BWI76_RS14320 -2.6 -2.1 hypothetical protein compare
BWI76_RS11610 -2.6 -2.0 glutamate dehydrogenase compare
BWI76_RS20380 -2.6 -0.7 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS26440 -2.6 -1.3 hypothetical protein compare
BWI76_RS20640 -2.6 -4.0 cysteine synthase A compare
BWI76_RS01135 -2.5 -5.5 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS24340 -2.5 -5.9 two-component sensor histidine kinase compare
BWI76_RS25300 -2.5 -2.7 hybrid sensor histidine kinase/response regulator compare
BWI76_RS21370 -2.5 -1.0 ATP-dependent RNA helicase SrmB compare
BWI76_RS00240 -2.5 -1.4 FMN-binding protein MioC compare
BWI76_RS21450 -2.4 -1.8 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS01900 -2.4 -4.5 tRNA-dihydrouridine synthase A compare
BWI76_RS07465 -2.4 -1.4 TetR family transcriptional regulator compare
BWI76_RS20440 -2.4 -2.5 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS25280 -2.4 -1.2 RNase adaptor protein RapZ compare
BWI76_RS25065 -2.4 -3.7 polyribonucleotide nucleotidyltransferase compare
BWI76_RS04645 -2.3 -3.4 3-dehydroquinase compare
BWI76_RS00960 -2.3 -5.5 acetolactate synthase 2 catalytic subunit compare
BWI76_RS13755 -2.3 -1.8 hypothetical protein compare
BWI76_RS22690 -2.2 -2.6 adenylyl-sulfate kinase compare
BWI76_RS23985 -2.2 -5.4 erythrose-4-phosphate dehydrogenase compare
BWI76_RS02530 -2.2 -1.4 tRNA dimethylallyltransferase compare
BWI76_RS23360 -2.2 -1.2 diaminopimelate decarboxylase compare
BWI76_RS26395 -2.1 -5.3 cell division protein FtsE compare
BWI76_RS01080 -2.1 -7.1 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS08760 -2.1 -4.5 biotin synthase compare
BWI76_RS19840 -2.0 -0.5 hypothetical protein compare
BWI76_RS08605 -2.0 -1.7 phosphoglyceromutase compare
BWI76_RS09735 -2.0 -3.9 formate acetyltransferase compare
BWI76_RS26665 -2.0 -3.0 DNA-binding response regulator compare
BWI76_RS24740 -2.0 -2.6 GntR family transcriptional regulator compare
BWI76_RS01385 -2.0 -1.9 potassium transporter compare
BWI76_RS00180 -2.0 -0.8 F0F1 ATP synthase subunit epsilon compare
BWI76_RS13560 -1.9 -0.8 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS22805 -1.9 -7.4 GTP diphosphokinase compare
BWI76_RS09190 -1.9 -1.3 hypothetical protein compare
BWI76_RS09730 -1.9 -0.7 pyruvate formate lyase 1-activating protein compare
BWI76_RS26730 -1.9 -5.6 inner membrane protein YhjD compare
BWI76_RS25920 -1.9 -1.4 peptidylprolyl isomerase compare
BWI76_RS22700 -1.9 -4.4 sulfate adenylyltransferase subunit 2 compare
BWI76_RS22090 -1.9 -1.5 transcriptional regulator compare
BWI76_RS19685 -1.9 -4.2 lysine transporter compare
BWI76_RS01095 -1.9 -1.8 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS08210 -1.9 -0.9 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS02815 -1.8 -1.5 fructose-bisphosphatase class I compare
BWI76_RS16425 -1.8 -1.5 hypothetical protein compare
BWI76_RS09335 -1.8 -1.0 baseplate assembly protein W compare
BWI76_RS09615 -1.8 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS27450 -1.8 -4.9 ferredoxin--NADP(+) reductase compare
BWI76_RS09655 -1.8 -5.1 leucine-responsive regulatory protein compare
BWI76_RS18870 -1.8 -1.9 protein NifZ compare
BWI76_RS24580 -1.8 -2.6 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS02610 -1.8 -4.2 transcriptional regulator compare
BWI76_RS08980 -1.8 -1.3 DNA starvation/stationary phase protection protein compare
BWI76_RS25320 -1.8 -7.9 glutamate synthase compare
BWI76_RS14770 -1.8 -1.0 PTS IIA 2 domain protein compare
BWI76_RS15650 -1.8 -3.9 gp5 compare
BWI76_RS21165 -1.8 -1.3 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS09970 -1.8 -0.9 porin OmpA compare
BWI76_RS01870 -1.8 -3.1 diacylglycerol kinase compare
BWI76_RS12070 -1.8 -0.8 hypothetical protein compare
BWI76_RS08495 -1.7 -3.4 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS02550 -1.7 -3.8 protease modulator HflC compare
BWI76_RS26095 -1.7 -0.7 shikimate kinase compare
BWI76_RS11900 -1.7 -0.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS06635 -1.7 -1.8 methylated-DNA--protein-cysteine methyltransferase compare
BWI76_RS08020 -1.7 -5.0 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS11255 -1.7 -1.6 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS24850 -1.7 -5.1 DeoR family transcriptional regulator compare
BWI76_RS25425 -1.6 -0.9 arginine repressor compare
BWI76_RS26055 -1.6 -7.7 siroheme synthase compare
BWI76_RS13920 -1.6 -5.8 magnesium-translocating P-type ATPase compare
BWI76_RS12145 -1.6 -1.7 hypothetical protein compare
BWI76_RS11300 -1.6 -0.8 cupin compare
BWI76_RS05555 -1.6 -2.1 Crl family RNA polymerase assembly factor compare
BWI76_RS15965 -1.6 -4.9 MFS transporter compare
BWI76_RS00720 -1.6 -1.4 DNA-binding response regulator compare
BWI76_RS25315 -1.6 -6.8 glutamate synthase large subunit compare
BWI76_RS16635 -1.6 -5.1 carbonate dehydratase compare
BWI76_RS21480 -1.6 -4.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS24605 -1.6 -4.8 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS04990 -1.6 -3.9 pantoate--beta-alanine ligase compare
BWI76_RS19770 -1.6 -1.2 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS26175 -1.6 -5.0 DeoR/GlpR family transcriptional regulator compare
BWI76_RS08500 -1.6 -2.0 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS21580 -1.6 -1.0 SsrA-binding protein compare
BWI76_RS10475 -1.6 -5.4 binding-protein-dependent transport system inner membrane protein compare
BWI76_RS01540 -1.6 -2.2 thiamine biosynthesis protein ThiS compare
BWI76_RS10305 -1.5 -6.3 transposase compare
BWI76_RS18000 -1.5 -3.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
BWI76_RS04305 -1.5 -0.9 molecular chaperone DnaJ compare
BWI76_RS04270 -1.5 -3.7 transaldolase compare


Specific Phenotypes

For 4 genes in this experiment

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL across organisms