Experiment set14IT050 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS08120 +2.9 13.7 cobalt transporter compare
BWI76_RS01225 +2.8 16.0 magnesium transporter CorA compare
BWI76_RS06485 +2.7 2.5 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS21540 +2.6 15.4 membrane protein compare
BWI76_RS00140 +2.4 3.9 phosphate transport system regulator PhoU compare
BWI76_RS18605 +2.2 2.3 oxidoreductase molybdopterin-binding protein compare
BWI76_RS17400 +2.1 2.9 transporter compare
BWI76_RS07730 +1.8 1.2 iron-enterobactin transporter membrane protein compare
BWI76_RS13445 +1.7 2.1 alpha/beta hydrolase compare
BWI76_RS20995 +1.6 6.3 RNA degradosome polyphosphate kinase compare
BWI76_RS00025 +1.4 1.6 hypothetical protein compare
BWI76_RS23895 +1.3 1.1 Xaa-Pro aminopeptidase compare
BWI76_RS08765 +1.3 2.3 8-amino-7-oxononanoate synthase compare
BWI76_RS19700 +1.3 2.4 deoxyribonuclease IV compare
BWI76_RS01585 +1.2 4.7 transcriptional regulator compare
BWI76_RS24110 +1.2 1.2 YggU family protein compare
BWI76_RS06080 +1.2 1.2 taurine dioxygenase compare
BWI76_RS26405 +1.2 1.8 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS14805 +1.1 2.6 hypothetical protein compare
BWI76_RS13240 +1.1 1.8 hypothetical protein compare
BWI76_RS12665 +1.1 2.0 hypothetical protein compare
BWI76_RS15975 +1.1 0.9 hypothetical protein compare
BWI76_RS19480 +1.1 3.1 transcriptional regulator compare
BWI76_RS12545 +1.1 2.0 hypothetical protein compare
BWI76_RS21535 +1.1 3.5 inner membrane protein YpjD compare
BWI76_RS27940 +1.1 1.4 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BWI76_RS05235 +1.1 1.0 hypothetical protein compare
BWI76_RS01330 +1.0 2.6 twin-arginine translocase subunit TatC compare
BWI76_RS10745 +1.0 0.8 hypothetical protein compare
BWI76_RS04915 +1.0 3.2 hypothetical protein compare
BWI76_RS22850 +1.0 2.4 tRNA pseudouridine synthase TruC compare
BWI76_RS01995 +1.0 1.6 AraC family transcriptional regulator compare
BWI76_RS11040 +1.0 2.5 ribonuclease E compare
BWI76_RS11755 +1.0 1.8 catalase HPII compare
BWI76_RS05790 +1.0 1.2 phage DNA-binding protein compare
BWI76_RS06190 +0.9 1.2 hypothetical protein compare
BWI76_RS16160 +0.9 1.9 LysR family transcriptional regulator compare
BWI76_RS01325 +0.9 1.5 twin-arginine translocase subunit TatB compare
BWI76_RS20800 +0.9 2.3 carboxysome shell protein compare
BWI76_RS08405 +0.9 2.2 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS09320 +0.9 1.9 P2 phage tail completion protein R compare
BWI76_RS19880 +0.9 3.7 magnesium transporter compare
BWI76_RS23260 +0.9 1.4 prepilin-type cleavage/methylation domain-containing protein compare
BWI76_RS08380 +0.9 0.9 endonuclease VIII compare
BWI76_RS16805 +0.9 2.2 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS07475 +0.9 1.4 DNA-binding transcriptional regulator RamA compare
BWI76_RS04805 +0.9 2.6 8-oxo-dGTP diphosphatase compare
BWI76_RS01650 +0.9 2.1 acetyltransferase compare
BWI76_RS10430 +0.9 2.5 thiol:disulfide interchange protein DsbG compare
BWI76_RS14970 +0.9 1.2 pyrroline-5-carboxylate reductase compare
BWI76_RS18770 +0.8 0.9 DNA gyrase inhibitor compare
BWI76_RS25545 +0.8 2.9 hypothetical protein compare
BWI76_RS24350 +0.8 1.7 quinol monooxygenase compare
BWI76_RS18390 +0.8 1.6 hypothetical protein compare
BWI76_RS00865 +0.8 3.1 DNA-binding transcriptional regulator OxyR compare
BWI76_RS05520 +0.8 2.4 hypothetical protein compare
BWI76_RS17155 +0.8 1.4 hypothetical protein compare
BWI76_RS09085 +0.8 4.5 molybdopterin molybdenumtransferase MoeA compare
BWI76_RS06120 +0.8 1.6 membrane protein compare
BWI76_RS16080 +0.8 1.5 LysR family transcriptional regulator compare
BWI76_RS18810 +0.8 2.2 nitrogenase iron protein compare
BWI76_RS15985 +0.8 1.3 LysR family transcriptional regulator compare
BWI76_RS16015 +0.8 2.0 pheromone autoinducer 2 transporter compare
BWI76_RS27735 +0.8 1.7 hypothetical protein compare
BWI76_RS16745 +0.8 2.4 alpha-acetolactate decarboxylase compare
BWI76_RS11790 +0.8 1.7 acyl-CoA thioesterase compare
BWI76_RS13415 +0.8 2.5 spermidine/putrescine ABC transporter permease compare
BWI76_RS27850 +0.8 3.3 DNA-binding transcriptional regulator DsdC compare
BWI76_RS14225 +0.8 2.4 anti-ECF sigma factor ChrR compare
BWI76_RS11515 +0.8 1.0 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS02745 +0.8 0.9 hypothetical protein compare
BWI76_RS23520 +0.8 1.1 hypothetical protein compare
BWI76_RS19585 +0.8 1.6 gentisate 1,2-dioxygenase compare
BWI76_RS13330 +0.8 1.0 tellurite resistance methyltransferase TehB compare
BWI76_RS10840 +0.8 2.6 membrane protein compare
BWI76_RS16030 +0.8 2.6 malonate decarboxylase acyl carrier protein compare
BWI76_RS17230 +0.8 2.1 peptide ABC transporter permease compare
BWI76_RS24335 +0.8 2.8 two-component system response regulator QseB compare
BWI76_RS20765 +0.8 2.8 ethanolamine ammonia lyase large subunit compare
BWI76_RS17795 +0.8 1.9 ribonuclease D compare
BWI76_RS21995 +0.8 2.3 transcriptional regulator compare
BWI76_RS21485 +0.8 3.1 DUF4154 domain-containing protein compare
BWI76_RS06335 +0.8 2.3 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS23705 +0.7 1.9 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS15940 +0.7 1.1 DMSO reductase maturation protein DsmD compare
BWI76_RS14410 +0.7 1.6 hypothetical protein compare
BWI76_RS04840 +0.7 2.1 prepilin peptidase-dependent pilin compare
BWI76_RS13095 +0.7 1.5 phenylacetate-CoA oxygenase subunit PaaB compare
BWI76_RS07165 +0.7 2.0 hypothetical protein compare
BWI76_RS07985 +0.7 0.7 fluoride ion transporter CrcB compare
BWI76_RS15270 +0.7 2.7 phenazine biosynthesis protein PhzF family compare
BWI76_RS23325 +0.7 2.0 hypothetical protein compare
BWI76_RS24070 +0.7 1.3 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
BWI76_RS17985 +0.7 2.9 hypothetical protein compare
BWI76_RS00725 +0.7 1.8 periplasmic repressor CpxP compare
BWI76_RS10380 +0.7 3.7 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS09165 +0.7 2.2 phosphatase YbjI compare
BWI76_RS10725 +0.7 2.0 hypothetical protein compare
BWI76_RS20760 +0.7 2.2 ethanolamine ammonia-lyase small subunit compare
BWI76_RS07780 +0.7 0.8 hypothetical protein compare
BWI76_RS23250 +0.7 1.4 hypothetical protein compare
BWI76_RS11680 +0.7 3.4 succinylglutamate-semialdehyde dehydrogenase compare
BWI76_RS11600 +0.7 1.6 selenide, water dikinase SelD compare
BWI76_RS23030 +0.7 1.4 cobalamin biosynthesis protein CbiM compare
BWI76_RS02625 +0.7 2.3 PTS ascorbate transporter subunit IIB compare
BWI76_RS11230 +0.7 2.1 NAD-dependent deacylase compare
BWI76_RS12780 +0.7 1.5 hypothetical protein compare
BWI76_RS02800 +0.7 1.9 ABC transporter compare
BWI76_RS10680 +0.7 2.3 tartrate dehydrogenase compare
BWI76_RS19330 +0.7 0.5 HAD family hydrolase compare
BWI76_RS00290 +0.7 3.0 Ribokinase (EC 2.7.1.15) (from data) compare
BWI76_RS18755 +0.7 0.8 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS04515 +0.7 0.8 Co2+/Mg2+ efflux protein ApaG compare
BWI76_RS15030 +0.7 1.2 ABC transporter compare
BWI76_RS03515 +0.7 2.2 hypothetical protein compare
BWI76_RS00825 +0.7 2.9 AraC family transcriptional regulator compare
BWI76_RS06200 +0.7 1.7 hypothetical protein compare
BWI76_RS14540 +0.7 1.0 yersiniabactin biosynthetic protein YbtU compare
BWI76_RS05640 +0.7 1.3 GntR family transcriptional regulator compare
BWI76_RS13625 +0.7 1.8 hypothetical protein compare
BWI76_RS23340 +0.7 0.8 transcriptional regulator compare
BWI76_RS19240 +0.7 1.1 ABC transporter substrate-binding protein compare
BWI76_RS20025 +0.7 2.2 HAMP domain-containing histidine kinase compare
BWI76_RS20880 +0.7 1.6 esterase compare
BWI76_RS00475 +0.7 3.0 sulfurtransferase FdhD compare
BWI76_RS04700 +0.7 0.9 acetolactate synthase small subunit compare
BWI76_RS14670 +0.7 0.9 hypothetical protein compare
BWI76_RS15080 +0.7 5.2 hypothetical protein compare
BWI76_RS08645 +0.7 1.7 molybdate ABC transporter substrate-binding protein compare
BWI76_RS24035 +0.7 2.4 hypothetical protein compare
BWI76_RS00885 +0.7 1.6 tRNA (uridine(54)-C5)-methyltransferase TrmA compare
BWI76_RS11775 +0.7 1.6 2-deoxy-D-gluconate 3-dehydrogenase compare
BWI76_RS03045 +0.7 1.0 hypothetical protein compare
BWI76_RS19310 +0.7 1.8 ABC transporter permease compare
BWI76_RS16645 +0.6 1.5 DeoR family transcriptional regulator compare
BWI76_RS01260 +0.6 2.0 lysophospholipase L2 compare
BWI76_RS15200 +0.6 1.8 glutaminase compare
BWI76_RS14955 +0.6 3.0 peptidase M17 leucyl aminopeptidase domain-containing protein compare
BWI76_RS11890 +0.6 2.1 glycosyl hydrolase compare
BWI76_RS14775 +0.6 1.3 creatinine amidohydrolase compare
BWI76_RS19360 +0.6 2.0 glucose dehydrogenase compare
BWI76_RS13680 +0.6 1.7 methyl viologen resistance protein SmvA compare
BWI76_RS12985 +0.6 1.0 transcriptional regulator compare
BWI76_RS17770 +0.6 0.9 isomerase/hydrolase compare
BWI76_RS09565 +0.6 2.5 hybrid-cluster NAD(P)-dependent oxidoreductase compare
BWI76_RS04570 +0.6 2.1 RNA polymerase-associated protein RapA compare
BWI76_RS06505 +0.6 3.0 hypothetical protein compare
BWI76_RS15100 +0.6 3.2 phenazine biosynthesis protein PhzE compare
BWI76_RS22620 +0.6 1.6 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BWI76_RS22965 +0.6 1.8 cysteine sulfinate desulfinase compare
BWI76_RS13420 +0.6 1.1 ABC transporter permease compare
BWI76_RS13805 +0.6 2.1 inorganic diphosphatase compare
BWI76_RS06400 +0.6 1.2 oxidative-stress-resistance chaperone compare
BWI76_RS10320 +0.6 2.4 alpha-glucosidase/alpha-galactosidase compare
BWI76_RS21445 +0.6 1.2 hypothetical protein compare
BWI76_RS00330 +0.6 3.8 molybdenum cofactor guanylyltransferase compare
BWI76_RS16120 +0.6 1.5 4-carboxymuconolactone decarboxylase compare
BWI76_RS02695 +0.6 2.6 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS04175 +0.6 1.3 energy-dependent translational throttle protein EttA compare
BWI76_RS12910 +0.6 1.8 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
BWI76_RS11810 +0.6 0.9 outer membrane protein OmpW compare
BWI76_RS16760 +0.6 1.8 lipase compare
BWI76_RS15890 +0.6 2.0 Zn-dependent oxidoreductase compare
BWI76_RS09465 +0.6 1.9 polyamine ABC transporter ATP-binding protein compare
BWI76_RS26565 +0.6 2.6 membrane protein compare
BWI76_RS08920 +0.6 3.3 ATP-dependent DNA helicase DinG compare
BWI76_RS11525 +0.6 1.5 HNH endonuclease compare
BWI76_RS12480 +0.6 2.2 TIGR01620 family protein compare
BWI76_RS16915 +0.6 1.7 alpha/beta hydrolase fold protein compare
BWI76_RS11780 +0.6 1.2 2-deoxyglucose-6-phosphatase compare
BWI76_RS02720 +0.6 2.3 NAD(P)-dependent oxidoreductase compare
BWI76_RS16035 +0.6 1.3 biotin-independent malonate decarboxylase subunit beta compare
BWI76_RS19525 +0.6 2.0 D-alanyl-D-alanine endopeptidase compare
BWI76_RS12855 +0.6 0.6 enamine deaminase RidA compare
BWI76_RS11700 +0.6 0.9 hypothetical protein compare
BWI76_RS14435 +0.6 0.7 glutamine ABC transporter ATP-binding protein compare
BWI76_RS04395 +0.6 2.9 putative HTH-type transcriptional regulator compare
BWI76_RS18725 +0.6 1.6 hypothetical protein compare
BWI76_RS11150 +0.6 0.7 membrane protein compare
BWI76_RS27455 +0.6 0.8 DUF805 domain-containing protein compare
BWI76_RS23465 +0.6 3.0 oxidoreductase compare
BWI76_RS14980 +0.6 0.6 hypothetical protein compare
BWI76_RS20985 +0.6 1.8 glycosyl hydrolase family protein compare
BWI76_RS17085 +0.6 1.6 hypothetical protein compare
BWI76_RS04205 +0.6 2.3 right oriC-binding transcriptional activator compare
BWI76_RS10815 +0.6 1.0 iron permease compare
BWI76_RS06125 +0.6 3.1 D-alanine--D-alanine ligase A compare
BWI76_RS01285 +0.6 1.7 amino acid ABC transporter substrate-binding protein compare
BWI76_RS20375 +0.6 0.9 membrane protein compare
BWI76_RS21980 +0.6 0.9 hypothetical protein compare
BWI76_RS15265 +0.6 1.8 hypothetical protein compare
BWI76_RS11880 +0.6 2.0 23S rRNA pseudouridylate synthase B compare
BWI76_RS24175 +0.6 2.7 ornithine decarboxylase compare
BWI76_RS21380 +0.6 1.1 uracil-DNA glycosylase compare
BWI76_RS19520 +0.6 2.8 acetyltransferase GCN5 compare
BWI76_RS10495 +0.6 1.6 LysR family transcriptional regulator compare
BWI76_RS27395 +0.6 2.3 hypothetical protein compare
BWI76_RS16880 +0.6 1.2 GlpE family protein compare
BWI76_RS03910 +0.6 2.1 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BWI76_RS10500 +0.6 1.1 flavoprotein monooxygenase compare


Specific Phenotypes

For 4 genes in this experiment

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL across organisms