Experiment set14IT049 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS18930 -7.3 -3.9 histidinol-phosphate transaminase compare
BWI76_RS18950 -7.1 -3.1 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS04465 -6.3 -3.4 carbamoyl-phosphate synthase small subunit compare
BWI76_RS04255 -6.3 -7.3 threonine synthase compare
BWI76_RS27390 -6.1 -4.7 ribonuclease PH compare
BWI76_RS21265 -6.0 -14.3 phosphoribosylformylglycinamidine synthase compare
BWI76_RS20350 -6.0 -8.1 amidophosphoribosyltransferase compare
BWI76_RS18955 -6.0 -4.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS18940 -5.9 -4.1 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS01610 -5.8 -9.0 phosphoribosylamine--glycine ligase compare
BWI76_RS23365 -5.8 -2.5 LysR family transcriptional regulator compare
BWI76_RS25115 -5.7 -8.5 argininosuccinate synthase compare
BWI76_RS26425 -5.7 -7.8 zinc/cadmium/mercury/lead-transporting ATPase compare
BWI76_RS07065 -5.7 -5.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS18925 -5.6 -4.9 histidinol dehydrogenase compare
BWI76_RS18935 -5.5 -4.0 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS25700 -5.5 -5.9 heavy metal-responsive transcriptional regulator compare
BWI76_RS04245 -5.4 -14.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS00835 -5.3 -15.5 phosphoenolpyruvate carboxylase compare
BWI76_RS01110 -5.2 -2.4 TDP-fucosamine acetyltransferase compare
BWI76_RS20895 -5.1 -2.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS27385 -5.1 -6.9 orotate phosphoribosyltransferase compare
BWI76_RS04250 -5.0 -7.8 homoserine kinase compare
BWI76_RS00990 -5.0 -9.1 ketol-acid reductoisomerase compare
BWI76_RS08385 -4.9 -1.8 citrate (Si)-synthase compare
BWI76_RS00845 -4.9 -9.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS26000 -4.8 -8.0 aspartate aminotransferase family protein compare
BWI76_RS03010 -4.8 -9.1 ornithine carbamoyltransferase compare
BWI76_RS01115 -4.8 -1.8 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS11840 -4.7 -3.6 tryptophan synthase subunit alpha compare
BWI76_RS17975 -4.7 -3.5 tail-specific protease compare
BWI76_RS11850 -4.7 -10.0 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS26460 -4.7 -2.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS26455 -4.7 -1.5 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS20965 -4.7 -3.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS23220 -4.7 -10.4 amino-acid N-acetyltransferase compare
BWI76_RS16965 -4.7 -1.5 murein lipoprotein compare
BWI76_RS00850 -4.7 -8.0 acetylglutamate kinase compare
BWI76_RS07070 -4.6 -4.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS04675 -4.6 -7.2 3-isopropylmalate dehydrogenase compare
BWI76_RS05260 -4.6 -1.0 chaperone compare
BWI76_RS24340 -4.6 -6.8 two-component sensor histidine kinase compare
BWI76_RS04665 -4.6 -20.8 3-isopropylmalate dehydratase small subunit compare
BWI76_RS26665 -4.6 -2.2 DNA-binding response regulator compare
BWI76_RS22755 -4.6 -3.0 phosphoadenosine phosphosulfate reductase compare
BWI76_RS00975 -4.6 -12.6 dihydroxy-acid dehydratase compare
BWI76_RS11965 -4.5 -3.4 orotidine-5'-phosphate decarboxylase compare
BWI76_RS01615 -4.5 -8.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS00855 -4.5 -9.7 argininosuccinate lyase compare
BWI76_RS18920 -4.4 -2.7 ATP phosphoribosyltransferase compare
BWI76_RS11855 -4.4 -6.7 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS04470 -4.4 -10.9 carbamoyl phosphate synthase large subunit compare
BWI76_RS10990 -4.4 -1.6 dihydroorotase compare
BWI76_RS23265 -4.3 -1.3 hypothetical protein compare
BWI76_RS01655 -4.3 -8.5 homoserine O-succinyltransferase compare
BWI76_RS21350 -4.2 -3.7 anti-RNA polymerase sigma factor SigE compare
BWI76_RS24285 -4.1 -8.4 cystathionine beta-lyase compare
BWI76_RS08520 -4.1 -1.6 colicin transporter TolQ compare
BWI76_RS11860 -4.1 -7.7 anthranilate synthase component I compare
BWI76_RS05840 -4.0 -2.3 glutamate 5-kinase compare
BWI76_RS04990 -4.0 -5.8 pantoate--beta-alanine ligase compare
BWI76_RS21345 -4.0 -1.5 sigma-E factor regulatory protein RseB compare
BWI76_RS22690 -3.9 -1.9 adenylyl-sulfate kinase compare
BWI76_RS22760 -3.9 -6.6 sulfite reductase subunit beta compare
BWI76_RS00980 -3.9 -12.2 PLP-dependent threonine dehydratase compare
BWI76_RS04670 -3.8 -10.6 3-isopropylmalate dehydratase large subunit compare
BWI76_RS08760 -3.8 -4.8 biotin synthase compare
BWI76_RS09910 -3.8 -13.7 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS09760 -3.8 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS04160 -3.8 -2.2 phosphoserine phosphatase compare
BWI76_RS21475 -3.7 -1.9 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS16955 -3.7 -0.8 hypothetical protein compare
BWI76_RS02995 -3.7 -6.8 aspartate carbamoyltransferase compare
BWI76_RS11845 -3.7 -1.0 tryptophan synthase subunit beta compare
BWI76_RS04240 -3.6 -1.0 thr operon leader peptide compare
BWI76_RS20355 -3.6 -2.2 colicin V production protein compare
BWI76_RS21070 -3.6 -1.4 outer membrane protein assembly factor BamB compare
BWI76_RS05015 -3.6 -1.6 transcriptional regulator compare
BWI76_RS25335 -3.5 -1.3 stringent starvation protein A compare
BWI76_RS00875 -3.5 -4.8 DNA-binding transcriptional regulator FabR compare
BWI76_RS21235 -3.5 -0.8 hypothetical protein compare
BWI76_RS08530 -3.5 -1.1 protein TolA compare
BWI76_RS19905 -3.4 -3.8 OmpK36 porin compare
BWI76_RS20360 -3.3 -0.7 cell division protein DedD compare
BWI76_RS04680 -3.3 -9.4 2-isopropylmalate synthase compare
BWI76_RS26670 -3.3 -7.5 two-component sensor histidine kinase compare
BWI76_RS05835 -3.3 -1.4 gamma-glutamyl-phosphate reductase compare
BWI76_RS04685 -3.3 -7.9 putative leucine operon leader peptide compare
BWI76_RS01125 -3.2 -4.9 4-alpha-L-fucosyltransferase compare
BWI76_RS25645 -3.2 -5.2 shikimate dehydrogenase compare
BWI76_RS18605 -3.2 -1.7 oxidoreductase molybdopterin-binding protein compare
BWI76_RS24600 -3.2 -2.0 dihydroxyacetone kinase compare
BWI76_RS20390 -3.2 -3.7 erythronate-4-phosphate dehydrogenase compare
BWI76_RS02580 -3.2 -1.7 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS23920 -3.2 -1.5 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS01095 -3.2 -1.9 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS01900 -3.1 -5.4 tRNA-dihydrouridine synthase A compare
BWI76_RS08580 -3.1 -3.0 quinolinate synthetase compare
BWI76_RS21465 -3.0 -4.9 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS00345 -3.0 -2.7 protein disulfide oxidoreductase DsbA compare
BWI76_RS08495 -3.0 -4.0 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS04985 -3.0 -4.4 aspartate 1-decarboxylase compare
BWI76_RS15965 -3.0 -4.9 MFS transporter compare
BWI76_RS00720 -3.0 -1.3 DNA-binding response regulator compare
BWI76_RS08525 -3.0 -1.1 colicin transporter compare
BWI76_RS07465 -3.0 -0.9 TetR family transcriptional regulator compare
BWI76_RS06525 -3.0 -3.3 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS24100 -3.0 -3.1 YggS family pyridoxal phosphate enzyme compare
BWI76_RS21075 -3.0 -1.1 membrane protein compare
BWI76_RS24075 -2.9 -2.0 glutathione synthase compare
BWI76_RS07785 -2.9 -0.8 transcriptional regulator compare
BWI76_RS14320 -2.9 -1.4 hypothetical protein compare
BWI76_RS19010 -2.8 -1.6 polysaccharide pyruvyl transferase yvff compare
BWI76_RS01800 -2.8 -1.6 glucose-6-phosphate isomerase compare
BWI76_RS06535 -2.8 -1.7 endopeptidase La compare
BWI76_RS04645 -2.8 -2.7 3-dehydroquinase compare
BWI76_RS01090 -2.8 -3.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS01135 -2.8 -4.9 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS12495 -2.7 -0.8 2-Cys peroxiredoxin compare
BWI76_RS11980 -2.7 -1.2 DeoR family transcriptional regulator compare
BWI76_RS23985 -2.7 -7.0 erythrose-4-phosphate dehydrogenase compare
BWI76_RS00805 -2.7 -4.5 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS08210 -2.7 -0.8 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS04270 -2.7 -3.5 transaldolase compare
BWI76_RS21580 -2.6 -1.0 SsrA-binding protein compare
BWI76_RS00785 -2.6 -4.0 cystathionine gamma-synthase compare
BWI76_RS20380 -2.6 -0.6 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS09755 -2.6 -2.2 phosphoserine transaminase compare
BWI76_RS04845 -2.6 -5.8 nicotinate-nucleotide pyrophosphorylase compare
BWI76_RS08535 -2.6 -1.0 translocation protein TolB compare
BWI76_RS22765 -2.6 -7.5 sulfite reductase subunit alpha compare
BWI76_RS00960 -2.6 -5.3 acetolactate synthase 2 catalytic subunit compare
BWI76_RS09640 -2.5 -1.4 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS26730 -2.5 -6.0 inner membrane protein YhjD compare
BWI76_RS26390 -2.5 -7.8 cell division protein FtsX compare
BWI76_RS09645 -2.5 -0.5 thioredoxin-disulfide reductase compare
BWI76_RS14305 -2.5 -4.0 metallophosphoesterase compare
BWI76_RS19770 -2.5 -1.3 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS09195 -2.4 -0.7 N-acetyltransferase compare
BWI76_RS26470 -2.4 -3.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS21370 -2.4 -0.7 ATP-dependent RNA helicase SrmB compare
BWI76_RS00240 -2.4 -1.0 FMN-binding protein MioC compare
BWI76_RS27425 -2.3 -1.2 DNA-directed RNA polymerase subunit omega compare
BWI76_RS02735 -2.3 -2.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS24580 -2.3 -3.5 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS13920 -2.3 -5.2 magnesium-translocating P-type ATPase compare
BWI76_RS25920 -2.3 -1.2 peptidylprolyl isomerase compare
BWI76_RS24740 -2.3 -2.6 GntR family transcriptional regulator compare
BWI76_RS21660 -2.3 -1.1 antirestriction protein compare
BWI76_RS13820 -2.3 -1.1 hypothetical protein compare
BWI76_RS00755 -2.2 -2.5 ATP-dependent protease subunit HslV compare
BWI76_RS19845 -2.2 -5.7 phosphatase compare
BWI76_RS11610 -2.2 -1.5 glutamate dehydrogenase compare
BWI76_RS17980 -2.2 -3.2 RNA chaperone ProQ compare
BWI76_RS01080 -2.1 -6.2 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS05005 -2.1 -1.8 polynucleotide adenylyltransferase compare
BWI76_RS19685 -2.1 -3.9 lysine transporter compare
BWI76_RS24605 -2.1 -4.8 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS05915 -2.1 -2.5 helix-turn-helix transcriptional regulator compare
BWI76_RS21450 -2.1 -1.8 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS08380 -2.1 -0.9 endonuclease VIII compare
BWI76_RS10575 -2.1 -0.6 polar amino acid ABC transporter permease compare
BWI76_RS18000 -2.1 -3.3 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
BWI76_RS02550 -2.1 -3.9 protease modulator HflC compare
BWI76_RS25960 -2.0 -2.9 NUDIX hydrolase compare
BWI76_RS22700 -2.0 -3.9 sulfate adenylyltransferase subunit 2 compare
BWI76_RS23360 -2.0 -0.9 diaminopimelate decarboxylase compare
BWI76_RS27450 -2.0 -3.8 ferredoxin--NADP(+) reductase compare
BWI76_RS02530 -2.0 -1.0 tRNA dimethylallyltransferase compare
BWI76_RS19840 -2.0 -0.4 hypothetical protein compare
BWI76_RS01220 -2.0 -4.1 DNA-dependent helicase II compare
BWI76_RS01275 -2.0 -6.9 LysR family transcriptional regulator compare
BWI76_RS22805 -2.0 -6.8 GTP diphosphokinase compare
BWI76_RS24850 -1.9 -3.5 DeoR family transcriptional regulator compare
BWI76_RS00180 -1.9 -0.6 F0F1 ATP synthase subunit epsilon compare
BWI76_RS12090 -1.9 -1.0 HNH endonuclease compare
BWI76_RS04995 -1.9 -4.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
BWI76_RS26395 -1.9 -4.0 cell division protein FtsE compare
BWI76_RS09600 -1.9 -5.2 macrolide ABC transporter permease/ATP-binding protein MacB compare
BWI76_RS09255 -1.9 -2.1 hypothetical protein compare
BWI76_RS13590 -1.9 -1.5 hypothetical protein compare
BWI76_RS16515 -1.8 -1.4 LysR family transcriptional regulator compare
BWI76_RS22130 -1.8 -3.1 fructose-1-phosphate/6-phosphogluconate phosphatase compare
BWI76_RS24385 -1.8 -4.6 phosphodiesterase compare
BWI76_RS24080 -1.8 -1.4 DUF179 domain-containing protein compare
BWI76_RS12860 -1.8 -1.3 hypothetical protein compare
BWI76_RS10305 -1.8 -4.3 transposase compare
BWI76_RS04515 -1.8 -0.8 Co2+/Mg2+ efflux protein ApaG compare
BWI76_RS25300 -1.8 -2.2 hybrid sensor histidine kinase/response regulator compare
BWI76_RS14065 -1.8 -1.4 hypothetical protein compare
BWI76_RS09190 -1.8 -1.2 hypothetical protein compare
BWI76_RS01870 -1.8 -3.2 diacylglycerol kinase compare
BWI76_RS01385 -1.8 -1.7 potassium transporter compare
BWI76_RS21480 -1.8 -4.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS20150 -1.8 -1.2 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS01350 -1.7 -0.5 NAD(P)H-flavin reductase compare
BWI76_RS09970 -1.7 -0.7 porin OmpA compare
BWI76_RS08040 -1.7 -1.3 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS21165 -1.7 -1.0 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS02610 -1.7 -3.7 transcriptional regulator compare


Specific Phenotypes

For 7 genes in this experiment

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL across organisms