Experiment set14IT048 for Shewanella oneidensis MR-1
Sodium Fumarate electron acceptor; ground control
Group: ground_controlMedia: SBM_defined + Sodium D,L-Lactate (20 mM) + Sodium Fumarate dibasic (40 mM), pH=7.2
Culturing: MR1_ML3b, Bioserve FPA, Anaerobic, at 30 (C)
By: Michael Dougherty on 5-Sep-18
Specific Phenotypes
For 1 genes in this experiment
For ground_control Sodium D,L-Lactate in Shewanella oneidensis MR-1
For ground_control Sodium D,L-Lactate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Deoxyribose and Deoxynucleoside Catabolism | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| 2-deoxy-α-D-ribose 1-phosphate degradation | 3 | 3 | 1 |
| 2-deoxy-D-ribose degradation I | 3 | 2 | 1 |
| superpathway of pyrimidine deoxyribonucleosides degradation | 6 | 6 | 1 |
| superpathway of purine deoxyribonucleosides degradation | 7 | 7 | 1 |