Experiment set14IT041 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS11810 +1.8 2.4 outer membrane protein OmpW compare
BWI76_RS06080 +1.7 2.3 taurine dioxygenase compare
BWI76_RS19480 +1.6 2.4 transcriptional regulator compare
BWI76_RS14775 +1.5 3.2 creatinine amidohydrolase compare
BWI76_RS16480 +1.4 2.4 lactoylglutathione lyase compare
BWI76_RS20900 +1.4 1.6 outer membrane protein assembly factor BamC compare
BWI76_RS08765 +1.4 3.6 8-amino-7-oxononanoate synthase compare
BWI76_RS15940 +1.4 1.9 DMSO reductase maturation protein DsmD compare
BWI76_RS16210 +1.4 1.1 hypothetical protein compare
BWI76_RS15285 +1.3 3.1 stress protection protein MarC compare
BWI76_RS19330 +1.3 1.1 HAD family hydrolase compare
BWI76_RS14670 +1.2 2.1 hypothetical protein compare
BWI76_RS16300 +1.2 2.4 bifunctional beta-cystathionase/maltose regulon regulatory protein compare
BWI76_RS25600 +1.2 1.0 tRNA-Thr compare
BWI76_RS12550 +1.2 1.0 hypothetical protein compare
BWI76_RS07765 +1.2 2.3 thioesterase compare
BWI76_RS06325 +1.2 1.5 hypothetical protein compare
BWI76_RS20800 +1.1 2.1 carboxysome shell protein compare
BWI76_RS17400 +1.1 1.4 transporter compare
BWI76_RS03595 +1.1 1.9 ethanolamine utilization protein EutM compare
BWI76_RS21945 +1.1 2.0 LysR family transcriptional regulator compare
BWI76_RS05950 +1.1 1.8 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS14765 +1.1 3.6 PTS lactose/cellobiose transporter subunit IIB compare
BWI76_RS23320 +1.1 1.6 hypothetical protein compare
BWI76_RS04955 +1.1 1.8 hypoxanthine phosphoribosyltransferase compare
BWI76_RS15435 +1.1 1.2 hypothetical protein compare
BWI76_RS05075 +1.1 0.9 type II secretion system protein GspG compare
BWI76_RS20765 +1.0 5.4 ethanolamine ammonia lyase large subunit compare
BWI76_RS19375 +1.0 1.0 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS13435 +1.0 1.1 hypothetical protein compare
BWI76_RS07780 +1.0 1.2 hypothetical protein compare
BWI76_RS16025 +1.0 1.6 triphosphoribosyl-dephospho-CoA synthase compare
BWI76_RS16510 +1.0 2.9 transcriptional repressor PurR compare
BWI76_RS07740 +1.0 1.3 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS14825 +1.0 1.2 dienelactone hydrolase family protein compare
BWI76_RS11680 +1.0 3.9 succinylglutamate-semialdehyde dehydrogenase compare
BWI76_RS04525 +0.9 0.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS26410 +0.9 1.2 membrane protein compare
BWI76_RS12875 +0.9 3.1 bifunctional deaminase-reductase compare
BWI76_RS07730 +0.9 0.6 iron-enterobactin transporter membrane protein compare
BWI76_RS12570 +0.9 1.3 DUF1365 domain-containing protein compare
BWI76_RS10500 +0.9 1.8 flavoprotein monooxygenase compare
BWI76_RS15030 +0.9 1.6 ABC transporter compare
BWI76_RS25285 +0.9 0.9 HPr family phosphocarrier protein compare
BWI76_RS23760 +0.9 1.5 tRNA-Gly compare
BWI76_RS11900 +0.9 0.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS16455 +0.9 1.9 superoxide dismutase compare
BWI76_RS23895 +0.9 0.9 Xaa-Pro aminopeptidase compare
BWI76_RS06465 +0.9 1.9 IclR family transcriptional regulator compare
BWI76_RS11750 +0.9 1.7 chitooligosaccharide deacetylase compare
BWI76_RS11430 +0.9 0.8 lipoprotein compare
BWI76_RS17805 +0.9 0.9 membrane protein compare
BWI76_RS00140 +0.9 1.2 phosphate transport system regulator PhoU compare
BWI76_RS15975 +0.9 0.7 hypothetical protein compare
BWI76_RS14870 +0.9 0.7 hypothetical protein compare
BWI76_RS13245 +0.9 1.9 DNA-damage-inducible protein I compare
BWI76_RS01835 +0.9 3.0 chemotaxis protein CheW compare
BWI76_RS20760 +0.9 2.8 ethanolamine ammonia-lyase small subunit compare
BWI76_RS10725 +0.8 2.1 hypothetical protein compare
BWI76_RS12780 +0.8 1.4 hypothetical protein compare
BWI76_RS24945 +0.8 1.5 glutamine amidotransferase compare
BWI76_RS12985 +0.8 1.3 transcriptional regulator compare
BWI76_RS11755 +0.8 2.3 catalase HPII compare
BWI76_RS24070 +0.8 1.5 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
BWI76_RS19525 +0.8 3.3 D-alanyl-D-alanine endopeptidase compare
BWI76_RS15900 +0.8 1.8 hypothetical protein compare
BWI76_RS04840 +0.8 2.1 prepilin peptidase-dependent pilin compare
BWI76_RS21390 +0.8 2.3 thiol disulfide reductase thioredoxin compare
BWI76_RS01995 +0.8 1.3 AraC family transcriptional regulator compare
BWI76_RS13980 +0.8 1.0 hypothetical protein compare
BWI76_RS13805 +0.8 2.6 inorganic diphosphatase compare
BWI76_RS11600 +0.8 1.7 selenide, water dikinase SelD compare
BWI76_RS01935 +0.8 0.9 thiamin phosphate synthase compare
BWI76_RS08885 +0.8 1.7 transcriptional regulator compare
BWI76_RS10755 +0.8 1.2 pyrimidine utilization flavin reductase protein F compare
BWI76_RS12055 +0.8 2.1 DNA single-strand annealing protein RecT-like protein compare
BWI76_RS14805 +0.8 1.6 hypothetical protein compare
BWI76_RS17390 +0.8 1.5 DsrE family protein compare
BWI76_RS02690 +0.8 1.5 hypothetical protein compare
BWI76_RS22410 +0.8 2.4 PTS lactose/cellobiose transporter subunit IIA compare
BWI76_RS19310 +0.8 2.1 ABC transporter permease compare
BWI76_RS19540 +0.8 3.7 multidrug transporter permease compare
BWI76_RS10585 +0.8 2.4 amino acid ABC transporter ATP-binding protein compare
BWI76_RS22190 +0.8 3.0 hypothetical protein compare
BWI76_RS02800 +0.8 2.9 ABC transporter compare
BWI76_RS11790 +0.8 1.6 acyl-CoA thioesterase compare
BWI76_RS16795 +0.8 1.6 amino acid ABC transporter ATPase compare
BWI76_RS24260 +0.7 1.2 hypothetical protein compare
BWI76_RS12910 +0.7 2.7 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
BWI76_RS16980 +0.7 1.5 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS16495 +0.7 1.3 endopeptidase compare
BWI76_RS11605 +0.7 3.3 DNA topoisomerase III compare
BWI76_RS18565 +0.7 0.9 pemk protein compare
BWI76_RS16015 +0.7 1.6 pheromone autoinducer 2 transporter compare
BWI76_RS10380 +0.7 3.5 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS08835 +0.7 2.1 molybdopterin guanine dinucleotide biosynthesis protein MoaE compare
BWI76_RS08880 +0.7 2.1 secretion protein HlyD compare
BWI76_RS15945 +0.7 3.6 voltage-gated ClC-type chloride channel ClcB compare
BWI76_RS07855 +0.7 2.0 PucR family transcriptional regulator compare
BWI76_RS24155 +0.7 3.8 A/G-specific adenine glycosylase compare
BWI76_RS04210 +0.7 2.5 hypothetical protein compare
BWI76_RS16115 +0.7 1.7 fumarate hydratase compare
BWI76_RS02695 +0.7 2.8 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS25545 +0.7 2.5 hypothetical protein compare
BWI76_RS19520 +0.7 3.2 acetyltransferase GCN5 compare
BWI76_RS12575 +0.7 3.1 FAD-dependent oxidoreductase compare
BWI76_RS20750 +0.7 0.5 carboxysome structural protein EutK compare
BWI76_RS11535 +0.7 2.5 putative oxidoreductase, Zn-dependent and NAD(P)-binding protein compare
BWI76_RS23705 +0.7 2.4 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS07865 +0.7 1.6 methylthioribulose 1-phosphate dehydratase compare
BWI76_RS27045 +0.7 3.2 XylR family transcriptional regulator compare
BWI76_RS20795 +0.7 0.9 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS13495 +0.7 2.2 hypothetical protein compare
BWI76_RS01585 +0.7 2.7 transcriptional regulator compare
BWI76_RS24810 +0.7 2.0 hypothetical protein compare
BWI76_RS11675 +0.7 1.7 arginine N-succinyltransferase compare
BWI76_RS01225 +0.7 2.6 magnesium transporter CorA compare
BWI76_RS12545 +0.7 1.0 hypothetical protein compare
BWI76_RS08345 +0.7 1.5 Nif3-like dinuclear metal center protein compare
BWI76_RS08450 +0.7 2.2 fumarate hydratase compare
BWI76_RS17655 +0.7 1.7 MFS transporter compare
BWI76_RS19240 +0.7 1.1 ABC transporter substrate-binding protein compare
BWI76_RS14575 +0.7 1.7 TENA/THI-4 family protein compare
BWI76_RS20610 +0.7 2.2 LysR family transcriptional regulator compare
BWI76_RS22625 +0.7 0.7 transcriptional regulator compare
BWI76_RS03040 +0.7 1.4 leucyl aminopeptidase compare
BWI76_RS14515 +0.7 1.7 yersiniabactin-iron ABC transporter permease ATP-binding protein YbtQ compare
BWI76_RS13220 +0.7 1.9 N-acetyltransferase compare
BWI76_RS13175 +0.7 1.8 NodT family RND efflux system outer membrane lipoprotein compare
BWI76_RS18430 +0.7 1.7 hypothetical protein compare
BWI76_RS12865 +0.7 3.0 acetylornithine deacetylase compare
BWI76_RS03045 +0.7 1.0 hypothetical protein compare
BWI76_RS20430 +0.7 2.0 penicillin-insensitive murein endopeptidase compare
BWI76_RS14075 +0.7 0.6 TetR family transcriptional regulator compare
BWI76_RS24925 +0.7 1.3 DnaA initiator-associating protein DiaA compare
BWI76_RS15180 +0.7 3.0 altronate oxidoreductase compare
BWI76_RS15075 +0.7 3.2 non-ribosomal peptide synthase compare
BWI76_RS14925 +0.7 2.4 ABC transporter substrate-binding protein compare
BWI76_RS04960 +0.7 2.9 carbonate dehydratase compare
BWI76_RS14975 +0.7 2.7 glyoxalase-like domain protein compare
BWI76_RS20155 +0.7 0.7 NADH-quinone oxidoreductase subunit I compare
BWI76_RS21980 +0.7 1.4 hypothetical protein compare
BWI76_RS06505 +0.7 2.6 hypothetical protein compare
BWI76_RS07470 +0.6 2.2 MBL fold metallo-hydrolase compare
BWI76_RS16200 +0.6 0.5 NAD(P) transhydrogenase subunit beta compare
BWI76_RS24330 +0.6 1.4 TIGR00156 family protein compare
BWI76_RS02255 +0.6 2.2 chaperone-modulator protein CbpM compare
BWI76_RS23710 +0.6 2.9 3-keto-2-deoxy-D-ribonyl-CoA thiolase (from data) compare
BWI76_RS24825 +0.6 1.7 2-hydroxy-3-oxopropionate reductase compare
BWI76_RS23885 +0.6 0.5 2-octaprenylphenol hydroxylase compare
BWI76_RS01930 +0.6 2.7 acid phosphatase/phosphotransferase compare
BWI76_RS24035 +0.6 2.5 hypothetical protein compare
BWI76_RS24150 +0.6 1.9 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
BWI76_RS06740 +0.6 1.6 50S ribosomal protein L36 compare
BWI76_RS16695 +0.6 2.5 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein compare
BWI76_RS14010 +0.6 2.5 SDR family oxidoreductase compare
BWI76_RS11915 +0.6 3.6 protease SohB compare
BWI76_RS11370 +0.6 1.0 iron-dicitrate transporter subunit FecD compare
BWI76_RS26405 +0.6 0.9 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS00825 +0.6 3.4 AraC family transcriptional regulator compare
BWI76_RS14780 +0.6 1.8 phosphotriesterase compare
BWI76_RS15330 +0.6 2.3 urea ABC transporter permease subunit UrtC compare
BWI76_RS02625 +0.6 1.3 PTS ascorbate transporter subunit IIB compare
BWI76_RS16050 +0.6 1.8 malonate decarboxylase holo-ACP synthase compare
BWI76_RS15080 +0.6 4.9 hypothetical protein compare
BWI76_RS26115 +0.6 2.6 hypothetical protein compare
BWI76_RS04155 +0.6 3.8 membrane protein compare
BWI76_RS00085 +0.6 1.9 hypothetical protein compare
BWI76_RS07380 +0.6 1.3 hypothetical protein compare
BWI76_RS08850 +0.6 2.1 cardiolipin synthase B compare
BWI76_RS24775 +0.6 2.1 hypothetical protein compare
BWI76_RS16205 +0.6 1.4 NAD(P) transhydrogenase subunit alpha compare
BWI76_RS15970 +0.6 1.7 carboxypeptidase M32 compare
BWI76_RS26005 +0.6 2.4 glutamine amidotransferase compare
BWI76_RS10330 +0.6 2.0 TetR family transcriptional regulator compare
BWI76_RS11150 +0.6 0.9 membrane protein compare
BWI76_RS01285 +0.6 2.9 amino acid ABC transporter substrate-binding protein compare
BWI76_RS20295 +0.6 2.0 dihydroneopterin triphosphate 2'-epimerase compare
BWI76_RS13680 +0.6 1.8 methyl viologen resistance protein SmvA compare
BWI76_RS06335 +0.6 1.9 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS05235 +0.6 0.5 hypothetical protein compare
BWI76_RS13090 +0.6 0.8 phenylacetate-CoA oxygenase subunit PaaA compare
BWI76_RS01675 +0.6 1.4 putative cytoplasmic protein compare
BWI76_RS20675 +0.6 1.5 GMP synthase compare
BWI76_RS01325 +0.6 1.4 twin-arginine translocase subunit TatB compare
BWI76_RS15980 +0.6 1.3 lysine transporter LysE compare
BWI76_RS17795 +0.6 1.5 ribonuclease D compare
BWI76_RS00335 +0.6 0.9 hypothetical protein compare
BWI76_RS21275 +0.6 2.6 lytic transglycosylase F compare
BWI76_RS12695 +0.6 1.4 zinc transporter ZntB compare
BWI76_RS14855 +0.6 3.3 periplasmic binding protein/LacI transcriptional regulator compare
BWI76_RS25485 +0.6 1.0 septum formation protein Maf compare
BWI76_RS26965 +0.6 1.8 hypothetical protein compare
BWI76_RS11125 +0.6 1.0 metal-dependent hydrolase compare
BWI76_RS16055 +0.6 1.6 malonate decarboxylase subunit epsilon compare
BWI76_RS15200 +0.6 1.8 glutaminase compare
BWI76_RS11735 +0.6 0.9 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
BWI76_RS27555 +0.6 2.0 putative sugar kinase/transcriptional regulator, ATPase domain protein compare
BWI76_RS01030 +0.6 3.8 cytosine/purine, uracil, thiamine, allantoin permease family protein compare
BWI76_RS23960 +0.6 2.6 oxidative stress defense protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella across organisms