Experiment set14IT033 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS15975 +1.7 1.8 hypothetical protein compare
BWI76_RS26805 +1.4 2.5 cellulose biosynthesis protein BcsF compare
BWI76_RS18165 +1.4 1.6 NUDIX pyrophosphatase compare
BWI76_RS07725 +1.3 1.9 iron-enterobactin transporter permease compare
BWI76_RS00025 +1.3 1.7 hypothetical protein compare
BWI76_RS20155 +1.3 1.3 NADH-quinone oxidoreductase subunit I compare
BWI76_RS21675 +1.3 1.1 hypothetical protein compare
BWI76_RS11430 +1.2 1.2 lipoprotein compare
BWI76_RS18360 +1.1 2.4 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS19310 +1.1 4.0 ABC transporter permease compare
BWI76_RS08765 +1.1 2.9 8-amino-7-oxononanoate synthase compare
BWI76_RS12550 +1.1 2.8 hypothetical protein compare
BWI76_RS11515 +1.0 2.2 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS16760 +1.0 3.7 lipase compare
BWI76_RS17390 +1.0 2.0 DsrE family protein compare
BWI76_RS14435 +1.0 1.6 glutamine ABC transporter ATP-binding protein compare
BWI76_RS17805 +1.0 1.2 membrane protein compare
BWI76_RS24810 +1.0 4.1 hypothetical protein compare
BWI76_RS26045 +1.0 2.3 nitrite reductase small subunit compare
BWI76_RS03045 +1.0 1.9 hypothetical protein compare
BWI76_RS14670 +1.0 1.6 hypothetical protein compare
BWI76_RS03595 +1.0 2.1 ethanolamine utilization protein EutM compare
BWI76_RS15900 +1.0 2.4 hypothetical protein compare
BWI76_RS20800 +1.0 1.8 carboxysome shell protein compare
BWI76_RS00375 +1.0 1.9 hypothetical protein compare
BWI76_RS23030 +0.9 2.4 cobalamin biosynthesis protein CbiM compare
BWI76_RS16000 +0.9 1.7 multidrug transporter subunit MdtI compare
BWI76_RS11790 +0.9 2.5 acyl-CoA thioesterase compare
BWI76_RS14775 +0.9 2.6 creatinine amidohydrolase compare
BWI76_RS23255 +0.9 3.6 prepilin-type cleavage/methylation domain-containing protein compare
BWI76_RS06740 +0.9 3.2 50S ribosomal protein L36 compare
BWI76_RS16015 +0.9 2.6 pheromone autoinducer 2 transporter compare
BWI76_RS26285 +0.9 4.2 glycerophosphodiester phosphodiesterase compare
BWI76_RS15235 +0.9 2.5 hypothetical protein compare
BWI76_RS03105 +0.9 1.0 myo-inosose-2 dehydratase compare
BWI76_RS14805 +0.9 2.3 hypothetical protein compare
BWI76_RS16915 +0.9 3.3 alpha/beta hydrolase fold protein compare
BWI76_RS14955 +0.9 3.8 peptidase M17 leucyl aminopeptidase domain-containing protein compare
BWI76_RS18755 +0.9 1.1 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS15260 +0.8 1.1 hypothetical protein compare
BWI76_RS20900 +0.8 1.0 outer membrane protein assembly factor BamC compare
BWI76_RS17200 +0.8 2.2 hypothetical protein compare
BWI76_RS11820 +0.8 1.4 short-chain dehydrogenase/reductase SDR compare
BWI76_RS17190 +0.8 1.3 TonB system transport protein TonB compare
BWI76_RS23050 +0.8 2.3 cobalt-precorrin-3B C(17)-methyltransferase compare
BWI76_RS16080 +0.8 2.7 LysR family transcriptional regulator compare
BWI76_RS25285 +0.8 0.9 HPr family phosphocarrier protein compare
BWI76_RS03040 +0.8 1.9 leucyl aminopeptidase compare
BWI76_RS12665 +0.8 1.9 hypothetical protein compare
BWI76_RS04805 +0.8 2.7 8-oxo-dGTP diphosphatase compare
BWI76_RS19575 +0.8 2.5 maleylacetoacetate isomerase compare
BWI76_RS19240 +0.8 1.6 ABC transporter substrate-binding protein compare
BWI76_RS15940 +0.8 1.2 DMSO reductase maturation protein DsmD compare
BWI76_RS17085 +0.8 2.1 hypothetical protein compare
BWI76_RS20930 +0.8 2.1 arsenate reductase (glutaredoxin) compare
BWI76_RS02745 +0.8 1.0 hypothetical protein compare
BWI76_RS23195 +0.8 2.5 ethanolamine utilization protein EutP compare
BWI76_RS10500 +0.8 1.5 flavoprotein monooxygenase compare
BWI76_RS13880 +0.8 2.1 lysine transporter LysE compare
BWI76_RS18810 +0.8 3.1 nitrogenase iron protein compare
BWI76_RS13215 +0.8 1.4 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS25545 +0.8 2.8 hypothetical protein compare
BWI76_RS13320 +0.8 1.7 putative LpxA-like enzyme compare
BWI76_RS07780 +0.7 1.0 hypothetical protein compare
BWI76_RS16335 +0.7 1.3 division septum protein Blr compare
BWI76_RS04840 +0.7 2.3 prepilin peptidase-dependent pilin compare
BWI76_RS26405 +0.7 1.6 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS24925 +0.7 2.3 DnaA initiator-associating protein DiaA compare
BWI76_RS14965 +0.7 3.4 AraC family transcriptional regulator compare
BWI76_RS03515 +0.7 2.4 hypothetical protein compare
BWI76_RS07920 +0.7 1.8 methionine aminotransferase compare
BWI76_RS11675 +0.7 1.9 arginine N-succinyltransferase compare
BWI76_RS07255 +0.7 1.8 hypothetical protein compare
BWI76_RS22450 +0.7 1.8 selenoprotein W-related protein compare
BWI76_RS14875 +0.7 4.6 ribokinase-like domain-containing protein compare
BWI76_RS21375 +0.7 0.7 autonomous glycyl radical cofactor GrcA compare
BWI76_RS12780 +0.7 1.2 hypothetical protein compare
BWI76_RS19890 +0.7 3.4 alpha-ketoglutarate-dependent dioxygenase AlkB compare
BWI76_RS01565 +0.7 1.5 NADH pyrophosphatase compare
BWI76_RS12940 +0.7 2.1 AraC family transcriptional regulator compare
BWI76_RS12825 +0.7 1.9 hypothetical protein compare
BWI76_RS20790 +0.7 2.1 aldehyde dehydrogenase compare
BWI76_RS12735 +0.7 2.2 phage repressor protein compare
BWI76_RS09865 +0.7 3.4 MBL fold hydrolase compare
BWI76_RS04875 +0.7 3.6 transcriptional regulator PdhR compare
BWI76_RS20390 +0.7 1.3 erythronate-4-phosphate dehydrogenase compare
BWI76_RS20675 +0.7 2.4 GMP synthase compare
BWI76_RS13720 +0.7 2.6 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
BWI76_RS09710 +0.7 1.6 transketolase compare
BWI76_RS16030 +0.7 2.6 malonate decarboxylase acyl carrier protein compare
BWI76_RS01935 +0.7 1.2 thiamin phosphate synthase compare
BWI76_RS11950 +0.7 1.9 phosphatidylglycerophosphatase B compare
BWI76_RS07730 +0.7 0.5 iron-enterobactin transporter membrane protein compare
BWI76_RS16800 +0.7 1.8 amino acid ABC transporter permease compare
BWI76_RS00790 +0.7 3.3 bifunctional aspartokinase II/homoserine dehydrogenase II compare
BWI76_RS24945 +0.7 1.3 glutamine amidotransferase compare
BWI76_RS10725 +0.7 1.9 hypothetical protein compare
BWI76_RS09530 +0.7 1.0 hypothetical protein compare
BWI76_RS16210 +0.7 0.9 hypothetical protein compare
BWI76_RS25375 +0.7 1.8 hypothetical protein compare
BWI76_RS17970 +0.7 2.0 zinc metalloprotease HtpX compare
BWI76_RS05045 +0.6 2.6 general secretion pathway protein GspM compare
BWI76_RS16035 +0.6 2.1 biotin-independent malonate decarboxylase subunit beta compare
BWI76_RS13445 +0.6 0.9 alpha/beta hydrolase compare
BWI76_RS16925 +0.6 3.6 3-(3-hydroxyphenyl)propionate hydroxylase compare
BWI76_RS13990 +0.6 2.7 allophanate hydrolase compare
BWI76_RS12565 +0.6 3.2 SAM-dependent methyltransferase compare
BWI76_RS11180 +0.6 2.8 hypothetical protein compare
BWI76_RS19375 +0.6 0.9 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS10840 +0.6 2.3 membrane protein compare
BWI76_RS07955 +0.6 1.9 nucleoside diphosphate kinase regulator compare
BWI76_RS11455 +0.6 1.8 AraC family transcriptional regulator compare
BWI76_RS24065 +0.6 1.5 deoxyribonuclease I compare
BWI76_RS22210 +0.6 2.8 murein transglycosylase B compare
BWI76_RS01715 +0.6 3.1 shikimate 5-dehydrogenase compare
BWI76_RS11635 +0.6 1.2 ABC transporter compare
BWI76_RS24255 +0.6 1.6 thiol:disulfide oxidoreductase compare
BWI76_RS27735 +0.6 2.4 hypothetical protein compare
BWI76_RS15890 +0.6 2.0 Zn-dependent oxidoreductase compare
BWI76_RS13625 +0.6 1.6 hypothetical protein compare
BWI76_RS19860 +0.6 1.2 hypothetical protein compare
BWI76_RS10040 +0.6 1.8 heat-shock protein HspQ compare
BWI76_RS12670 +0.6 0.7 DNA polymerase V subunit UmuD compare
BWI76_RS10750 +0.6 1.8 pyrimidine utilization transport protein G compare
BWI76_RS22005 +0.6 3.6 hypothetical protein compare
BWI76_RS01585 +0.6 3.3 transcriptional regulator compare
BWI76_RS17675 +0.6 0.8 hypothetical protein compare
BWI76_RS10735 +0.6 1.5 hypothetical protein compare
BWI76_RS13175 +0.6 2.5 NodT family RND efflux system outer membrane lipoprotein compare
BWI76_RS03665 +0.6 1.3 ABC transporter ATP-binding protein compare
BWI76_RS15295 +0.6 2.1 MDR efflux pump AcrAB transcriptional activator MarA compare
BWI76_RS11750 +0.6 1.7 chitooligosaccharide deacetylase compare
BWI76_RS13425 +0.6 2.6 1-pyrroline dehydrogenase compare
BWI76_RS17400 +0.6 0.8 transporter compare
BWI76_RS12480 +0.6 2.5 TIGR01620 family protein compare
BWI76_RS20460 +0.6 1.7 acetyl-CoA C-acyltransferase FadI compare
BWI76_RS14930 +0.6 1.3 hypothetical protein compare
BWI76_RS03560 +0.6 2.2 propanediol utilization phosphotransacylase compare
BWI76_RS18390 +0.6 1.2 hypothetical protein compare
BWI76_RS00480 +0.6 1.6 hypothetical protein compare
BWI76_RS15095 +0.6 1.9 isochorismatase compare
BWI76_RS11810 +0.6 0.8 outer membrane protein OmpW compare
BWI76_RS25380 +0.6 1.5 oxaloacetate decarboxylase subunit beta compare
BWI76_RS15030 +0.6 1.3 ABC transporter compare
BWI76_RS25915 +0.6 1.9 protein SlyX compare
BWI76_RS23165 +0.6 2.3 ATP:cob(I)alamin adenosyltransferase compare
BWI76_RS20765 +0.6 3.2 ethanolamine ammonia lyase large subunit compare
BWI76_RS11680 +0.6 3.6 succinylglutamate-semialdehyde dehydrogenase compare
BWI76_RS26335 +0.6 2.3 ABC transporter ATP-binding protein compare
BWI76_RS06280 +0.6 3.1 hypothetical protein compare
BWI76_RS14765 +0.6 2.6 PTS lactose/cellobiose transporter subunit IIB compare
BWI76_RS02045 +0.6 2.7 LysR family transcriptional regulator compare
BWI76_RS26635 +0.6 1.9 hypothetical protein compare
BWI76_RS04155 +0.6 2.7 membrane protein compare
BWI76_RS11915 +0.6 2.4 protease SohB compare
BWI76_RS13290 +0.6 2.9 protocatechuate 3,4-dioxygenase subunit beta compare
BWI76_RS14975 +0.6 1.1 glyoxalase-like domain protein compare
BWI76_RS08615 +0.6 2.5 galactokinase compare
BWI76_RS24180 +0.6 1.0 hypothetical protein compare
BWI76_RS19695 +0.6 1.3 membrane protein compare
BWI76_RS09145 +0.6 1.8 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS02950 +0.5 3.3 6-phospho-beta-glucosidase compare
BWI76_RS12985 +0.5 1.0 transcriptional regulator compare
BWI76_RS13060 +0.5 1.0 glutathione S-transferase compare
BWI76_RS06080 +0.5 1.9 taurine dioxygenase compare
BWI76_RS05895 +0.5 2.3 phosphonate ABC transporter, permease protein PhnE compare
BWI76_RS13515 +0.5 1.8 amino acid permease compare
BWI76_RS07690 +0.5 2.8 enterochelin synthetase component D compare
BWI76_RS26490 +0.5 3.5 phenolic acid decarboxylase compare
BWI76_RS15050 +0.5 1.5 sugar transporter compare
BWI76_RS16225 +0.5 3.3 arginine:ornithine antiporter compare
BWI76_RS18140 +0.5 1.1 zinc ABC transporter permease compare
BWI76_RS16055 +0.5 1.9 malonate decarboxylase subunit epsilon compare
BWI76_RS20805 +0.5 2.0 phosphate acetyltransferase compare
BWI76_RS10760 +0.5 1.8 nitroreductase family protein compare
BWI76_RS13095 +0.5 1.3 phenylacetate-CoA oxygenase subunit PaaB compare
BWI76_RS04700 +0.5 1.2 acetolactate synthase small subunit compare
BWI76_RS22930 +0.5 2.2 L-fuculokinase (EC 2.7.1.51) (from data) compare
BWI76_RS02435 +0.5 2.2 outer membrane lipoprotein Blc compare
BWI76_RS08220 +0.5 3.0 PTS N-acetyl glucosamine transporter subunit IIABC compare
BWI76_RS11460 +0.5 2.0 DUF441 family protein compare
BWI76_RS09165 +0.5 1.8 phosphatase YbjI compare
BWI76_RS08625 +0.5 2.0 UDP-glucose 4-epimerase GalE compare
BWI76_RS26365 +0.5 3.3 branched chain amino acid ABC transporter substrate-binding protein compare
BWI76_RS17765 +0.5 1.3 hypothetical protein compare
BWI76_RS11345 +0.5 2.3 LysR family transcriptional regulator compare
BWI76_RS14075 +0.5 0.5 TetR family transcriptional regulator compare
BWI76_RS17470 +0.5 2.3 MerR family transcriptional regulator compare
BWI76_RS07025 +0.5 2.4 glycerate kinase II compare
BWI76_RS05950 +0.5 0.9 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS07760 +0.5 1.4 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
BWI76_RS13495 +0.5 1.3 hypothetical protein compare
BWI76_RS14925 +0.5 2.4 ABC transporter substrate-binding protein compare
BWI76_RS01225 +0.5 2.3 magnesium transporter CorA compare
BWI76_RS18735 +0.5 2.4 tautomerase family protein compare
BWI76_RS07860 +0.5 2.0 cytosine permease compare
BWI76_RS11480 +0.5 3.0 hypothetical protein compare
BWI76_RS18175 +0.5 1.4 hydrolase compare
BWI76_RS21185 +0.5 2.9 hypothetical protein compare
BWI76_RS18130 +0.5 2.1 zinc ABC transporter substrate-binding protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella across organisms