Experiment set14IT029 for Pseudomonas fluorescens FW300-N2E2

Compare to:

50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine dihydrochloride

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2258 -5.2 -35.0 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5156 -4.1 -8.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4511 -3.9 -15.7 glutamine synthetase family protein compare
Pf6N2E2_3253 -3.9 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3665 -3.5 -2.1 serine/threonine protein kinase compare
Pf6N2E2_3783 -3.5 -6.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4187 -3.4 -7.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3610 -3.4 -7.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4597 -3.3 -8.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3782 -3.2 -5.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4826 -3.2 -6.2 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_64 -3.2 -3.5 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4516 -3.1 -8.0 Putrescine transport system permease protein PotH (TC 3.A.1.11.2) compare
Pf6N2E2_5177 -3.1 -10.7 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3839 -3.0 -7.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4512 -3.0 -14.7 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) conserved
Pf6N2E2_5337 -3.0 -10.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_71 -3.0 -7.3 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_5338 -3.0 -15.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4515 -3.0 -9.2 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf6N2E2_4048 -3.0 -5.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_4509 -2.9 -15.4 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) conserved
Pf6N2E2_5339 -2.9 -10.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4513 -2.9 -10.8 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf6N2E2_2261 -2.9 -17.9 VacJ-like lipoprotein precursor compare
Pf6N2E2_3260 -2.8 -12.8 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_4825 -2.8 -9.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4803 -2.7 -1.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3932 -2.7 -6.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4596 -2.6 -6.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3842 -2.6 -5.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3257 -2.6 -9.7 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_66 -2.6 -9.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_5157 -2.6 -12.6 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4391 -2.6 -13.1 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_4383 -2.6 -10.0 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
Pf6N2E2_2552 -2.5 -9.2 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_77 -2.5 -5.3 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3258 -2.5 -11.8 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_302 -2.4 -5.8 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_4564 -2.4 -7.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4514 -2.2 -8.9 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) conserved
Pf6N2E2_80 -2.2 -9.1 gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) conserved
Pf6N2E2_3300 -2.2 -3.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3869 -2.1 -8.4 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_2073 -2.1 -6.4 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_5894 -2.0 -6.9 Putative threonine efflux protein compare
Pf6N2E2_3940 -1.9 -9.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3630 -1.9 -3.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4800 -1.9 -12.7 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) compare
Pf6N2E2_3248 -1.8 -5.0 Probable transmembrane protein compare
Pf6N2E2_4439 -1.8 -7.4 Glutathione-regulated potassium-efflux system ATP-binding protein conserved
Pf6N2E2_4799 -1.8 -12.2 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
Pf6N2E2_2340 -1.8 -2.6 Transcriptional regulator, GntR family compare
Pf6N2E2_682 -1.7 -6.2 Predicted regulator PutR for proline utilization, GntR family compare
Pf6N2E2_5679 -1.7 -3.6 hypothetical protein compare
Pf6N2E2_4801 -1.7 -12.4 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
Pf6N2E2_5012 -1.7 -4.9 FIG00954871: hypothetical protein compare
Pf6N2E2_4059 -1.6 -1.3 DNA-binding protein HU-alpha compare
Pf6N2E2_3170 -1.6 -7.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_63 -1.6 -3.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5899 -1.6 -6.6 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_5176 -1.6 -2.8 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3521 -1.5 -6.1 Sensor histidine kinase/response regulator compare
Pf6N2E2_4390 -1.5 -7.5 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3786 -1.5 -3.5 Twin-arginine translocation protein TatC compare
Pf6N2E2_2466 -1.5 -7.4 Universal stress protein family conserved
Pf6N2E2_2752 -1.5 -7.7 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2318 -1.4 -9.4 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2465 -1.4 -6.8 Cys regulon transcriptional activator CysB compare
Pf6N2E2_2473 -1.4 -2.4 Major outer membrane lipoprotein I compare
Pf6N2E2_3505 -1.4 -1.2 Translation initiation factor SUI1-related protein compare
Pf6N2E2_5158 -1.4 -6.3 FIG00954153: hypothetical protein compare
Pf6N2E2_2447 -1.4 -5.6 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_3251 -1.4 -9.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_510 -1.4 -6.5 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
Pf6N2E2_5258 -1.4 -7.4 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2753 -1.4 -2.3 HtrA protease/chaperone protein compare
Pf6N2E2_3807 -1.4 -5.5 Histidine utilization repressor compare
Pf6N2E2_5728 -1.4 -3.5 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_5257 -1.3 -8.4 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_4052 -1.3 -1.4 FIG00955481: hypothetical protein compare
Pf6N2E2_3323 -1.3 -3.8 hypothetical protein compare
Pf6N2E2_1652 -1.3 -1.9 Transcriptional regulator, TetR family compare
Pf6N2E2_4987 -1.3 -1.6 MaoC-like domain protein compare
Pf6N2E2_1288 -1.3 -1.7 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_2320 -1.3 -4.8 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_146 -1.3 -1.6 Transcriptional regulator, MarR family compare
Pf6N2E2_2442 -1.3 -7.2 sensor histidine kinase/response regulator compare
Pf6N2E2_3655 -1.3 -10.1 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_477 -1.3 -4.2 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_3393 -1.3 -5.7 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_3875 -1.2 -1.7 FIG00953324: hypothetical protein compare
Pf6N2E2_4517 -1.2 -1.6 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_5175 -1.2 -2.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_40 -1.2 -2.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3656 -1.2 -3.9 Probable transcription regulator Mig-14 compare
Pf6N2E2_895 -1.2 -2.2 Transcriptional regulator, HxlR family compare
Pf6N2E2_5571 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_3328 -1.2 -2.4 transcriptional regulator compare
Pf6N2E2_4159 -1.2 -1.5 Cytochrome c4 compare
Pf6N2E2_3349 -1.2 -1.3 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_664 -1.2 -1.4 Acetoin catabolism protein X compare
Pf6N2E2_2588 -1.2 -2.7 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_4743 -1.2 -0.9 hypothetical protein compare
Pf6N2E2_4817 -1.1 -8.7 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_2317 -1.1 -3.5 Putative analog of CcoH, COG3198 compare
Pf6N2E2_5576 -1.1 -3.8 Cys-tRNA(Pro) deacylase YbaK compare
Pf6N2E2_5676 -1.1 -1.9 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_1859 -1.1 -2.5 hypothetical protein compare
Pf6N2E2_3899 -1.1 -4.0 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_3252 -1.1 -3.8 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5520 -1.1 -4.9 Sensory box histidine kinase compare
Pf6N2E2_5545 -1.1 -2.1 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_5300 -1.1 -5.4 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_4607 -1.0 -2.4 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_5160 -1.0 -0.9 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5391 -1.0 -6.3 Predicted ATPase related to phosphate starvation-inducible protein PhoH compare
Pf6N2E2_4351 -1.0 -6.3 Predicted signal transduction protein compare
Pf6N2E2_1694 -1.0 -1.5 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_292 -1.0 -2.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_1450 -1.0 -1.9 FIG00960438: hypothetical protein compare
Pf6N2E2_2420 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_2698 -1.0 -4.1 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_290 -1.0 -2.3 Cold shock protein CspD compare
Pf6N2E2_82 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_1821 -1.0 -1.2 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2549 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_5155 -1.0 -1.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4441 -1.0 -4.5 Homoserine/homoserine lactone efflux protein compare
Pf6N2E2_4601 -0.9 -0.9 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_3122 -0.9 -1.7 Chemotaxis signal transduction protein compare
Pf6N2E2_863 -0.9 -3.8 Transcriptional regulator, IclR family compare
Pf6N2E2_1611 -0.9 -2.9 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_291 -0.9 -2.5 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_3384 -0.9 -2.5 Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG compare
Pf6N2E2_5523 -0.9 -2.5 Small-conductance mechanosensitive channel compare
Pf6N2E2_2865 -0.9 -6.1 Gluconate utilization system Gnt-I transcriptional repressor compare
Pf6N2E2_189 -0.9 -2.1 regulatory protein, putative compare
Pf6N2E2_4451 -0.9 -3.6 FIG139438: lipoprotein B compare
Pf6N2E2_5663 -0.9 -2.7 L-Arginine ABC transporter, ATPase component (from data) compare
Pf6N2E2_3039 -0.9 -4.4 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_2124 -0.9 -1.1 Mg(2+) transport ATPase protein C compare
Pf6N2E2_3666 -0.9 -3.8 InaA protein compare
Pf6N2E2_2480 -0.9 -0.9 FIG00957636: hypothetical protein compare
Pf6N2E2_2707 -0.9 -3.4 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_2201 -0.9 -2.3 Transmembrane regulator protein PrtR compare
Pf6N2E2_4454 -0.9 -3.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_4609 -0.8 -2.4 UPF0301 protein YqgE compare
Pf6N2E2_2835 -0.8 -1.8 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_5093 -0.8 -5.9 ATP-dependent protease La (EC 3.4.21.53) Type II compare
Pf6N2E2_1396 -0.8 -2.1 ABC transporter, ATP-binding protein compare
Pf6N2E2_5956 -0.8 -3.8 FIG004453: protein YceG like compare
Pf6N2E2_2714 -0.8 -1.0 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_4715 -0.8 -2.5 Low-specificity L-threonine aldolase (EC 4.1.2.48) compare
Pf6N2E2_4612 -0.8 -1.3 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_5252 -0.8 -0.7 FIG00956396: hypothetical protein compare
Pf6N2E2_2386 -0.8 -1.9 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_724 -0.8 -1.2 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_3872 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_3533 -0.8 -2.8 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_1065 -0.8 -1.7 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_1502 -0.8 -1.0 Two-component system regulatory protein compare
Pf6N2E2_5979 -0.8 -3.6 D-galactonate regulator, IclR family compare
Pf6N2E2_2309 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_453 -0.8 -2.0 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_4467 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_78 -0.8 -3.2 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1081 -0.8 -2.4 probable membrane protein YPO3302 compare
Pf6N2E2_3727 -0.8 -1.5 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_4459 -0.8 -0.9 Transcriptional regulator, GntR family compare
Pf6N2E2_2080 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_5006 -0.8 -0.7 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2456 -0.8 -2.1 Transcriptional regulator, LysR family compare
Pf6N2E2_2586 -0.8 -0.7 Hpt domain protein compare
Pf6N2E2_733 -0.8 -2.1 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_54 -0.8 -2.5 Transcriptional regulator, TetR family compare
Pf6N2E2_3191 -0.8 -3.2 Serine acetyltransferase (EC 2.3.1.30) compare
Pf6N2E2_4068 -0.8 -6.3 Phosphate regulon metal ion transporter containing CBS domains compare
Pf6N2E2_1315 -0.8 -1.7 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_5746 -0.7 -1.4 Cobalamin synthase compare
Pf6N2E2_1238 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_4448 -0.7 -1.7 probable P23 protein compare
Pf6N2E2_2981 -0.7 -2.9 FIG00956655: hypothetical protein compare
Pf6N2E2_127 -0.7 -1.5 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_3696 -0.7 -0.4 hypothetical protein compare
Pf6N2E2_882 -0.7 -1.7 FIG00961517: hypothetical protein compare
Pf6N2E2_37 -0.7 -1.1 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_2455 -0.7 -3.1 FIG00953957: hypothetical protein compare
Pf6N2E2_1089 -0.7 -0.9 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_3876 -0.7 -2.2 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_1705 -0.7 -1.5 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4963 -0.7 -0.9 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_350 -0.7 -1.0 Gfa-like protein compare
Pf6N2E2_2587 -0.7 -4.4 Serine phosphatase RsbU, regulator of sigma subunit compare
Pf6N2E2_4889 -0.7 -3.2 Putative transport protein compare
Pf6N2E2_3284 -0.7 -3.4 Septum formation protein Maf compare
Pf6N2E2_1825 -0.7 -1.9 FOG: EAL domain protein compare
Pf6N2E2_5810 -0.7 -2.0 Homoserine/homoserine lactone efflux protein compare
Pf6N2E2_1779 -0.7 -1.2 Positive regulator of CheA protein activity (CheW) compare


Specific Phenotypes

For 14 genes in this experiment

For resistance P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine dihydrochloride in Pseudomonas fluorescens FW300-N2E2

For resistance P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine dihydrochloride across organisms