Experiment set14IT029 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS20925 +1.5 3.5 peptidase M48 compare
BWI76_RS06540 +1.5 3.4 DNA-binding protein HU-beta compare
BWI76_RS02180 +1.4 1.7 hypothetical protein compare
BWI76_RS23895 +1.4 1.0 Xaa-Pro aminopeptidase compare
BWI76_RS15975 +1.3 1.0 hypothetical protein compare
BWI76_RS06015 +1.3 1.3 hypothetical protein compare
BWI76_RS14835 +1.2 2.1 hypothetical protein compare
BWI76_RS19330 +1.2 0.9 HAD family hydrolase compare
BWI76_RS15260 +1.2 1.3 hypothetical protein compare
BWI76_RS23250 +1.2 2.3 hypothetical protein compare
BWI76_RS07985 +1.2 1.1 fluoride ion transporter CrcB compare
BWI76_RS12825 +1.1 2.5 hypothetical protein compare
BWI76_RS26405 +1.1 2.0 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS01935 +1.1 1.1 thiamin phosphate synthase compare
BWI76_RS23705 +1.1 3.5 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS01585 +1.1 3.5 transcriptional regulator compare
BWI76_RS14930 +1.1 2.0 hypothetical protein compare
BWI76_RS27605 +1.1 2.5 hypothetical protein compare
BWI76_RS08970 +1.1 2.0 glutamine ABC transporter permease GlnP compare
BWI76_RS05790 +1.1 1.2 phage DNA-binding protein compare
BWI76_RS08765 +1.0 1.7 8-amino-7-oxononanoate synthase compare
BWI76_RS12670 +1.0 1.0 DNA polymerase V subunit UmuD compare
BWI76_RS15950 +1.0 1.6 dethiobiotin synthase compare
BWI76_RS24035 +1.0 2.7 hypothetical protein compare
BWI76_RS08720 +1.0 1.6 imidazolonepropionase compare
BWI76_RS25365 +1.0 5.1 serine endoprotease DegQ compare
BWI76_RS08980 +1.0 1.3 DNA starvation/stationary phase protection protein compare
BWI76_RS16035 +1.0 2.4 biotin-independent malonate decarboxylase subunit beta compare
BWI76_RS05985 +1.0 2.1 branched-chain amino acid ABC transporter permease compare
BWI76_RS04525 +1.0 1.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS05445 +1.0 2.6 type 11 methyltransferase compare
BWI76_RS05520 +1.0 2.0 hypothetical protein compare
BWI76_RS13250 +1.0 1.3 cytochrome b561 compare
BWI76_RS17155 +1.0 1.8 hypothetical protein compare
BWI76_RS16140 +1.0 2.7 3-oxoadipate CoA-transferase compare
BWI76_RS11250 +1.0 1.0 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS17725 +1.0 4.7 K+/H+ antiporter compare
BWI76_RS12665 +1.0 1.6 hypothetical protein compare
BWI76_RS05975 +0.9 3.0 ABC transporter ATP-binding protein compare
BWI76_RS25980 +0.9 2.3 hypothetical protein compare
BWI76_RS06125 +0.9 3.7 D-alanine--D-alanine ligase A compare
BWI76_RS09150 +0.9 2.8 DNA-binding transcriptional repressor DeoR compare
BWI76_RS18810 +0.9 2.0 nitrogenase iron protein compare
BWI76_RS18755 +0.9 0.9 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS00060 +0.9 1.6 N-acetylneuraminate lyase compare
BWI76_RS07255 +0.9 2.2 hypothetical protein compare
BWI76_RS20225 +0.9 2.2 hypothetical protein compare
BWI76_RS18130 +0.9 2.4 zinc ABC transporter substrate-binding protein compare
BWI76_RS20375 +0.9 1.3 membrane protein compare
BWI76_RS20280 +0.9 1.4 phosphodiesterase compare
BWI76_RS08380 +0.9 0.8 endonuclease VIII compare
BWI76_RS00995 +0.9 2.8 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS18385 +0.9 1.2 hypothetical protein compare
BWI76_RS12620 +0.9 2.7 2-nitropropane dioxygenase compare
BWI76_RS20890 +0.9 2.9 neutral zinc metallopeptidase compare
BWI76_RS24955 +0.9 1.9 hypothetical protein compare
BWI76_RS18550 +0.9 1.2 tRNA-Asn compare
BWI76_RS26575 +0.9 2.7 universal stress protein B compare
BWI76_RS00765 +0.9 2.3 DNA-binding transcriptional regulator CytR compare
BWI76_RS16075 +0.9 1.2 oxidoreductase compare
BWI76_RS09015 +0.9 3.0 aldo/keto reductase compare
BWI76_RS00140 +0.9 1.0 phosphate transport system regulator PhoU compare
BWI76_RS09850 +0.8 4.0 L,D-transpeptidase compare
BWI76_RS07740 +0.8 0.8 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS24180 +0.8 0.8 hypothetical protein compare
BWI76_RS16455 +0.8 1.5 superoxide dismutase compare
BWI76_RS06810 +0.8 1.2 hypothetical protein compare
BWI76_RS19240 +0.8 1.3 ABC transporter substrate-binding protein compare
BWI76_RS13975 +0.8 1.3 urea carboxylase compare
BWI76_RS11515 +0.8 0.8 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS00825 +0.8 3.1 AraC family transcriptional regulator compare
BWI76_RS16795 +0.8 1.6 amino acid ABC transporter ATPase compare
BWI76_RS14935 +0.8 0.9 NIPSNAP family containing protein compare
BWI76_RS26965 +0.8 3.0 hypothetical protein compare
BWI76_RS18055 +0.8 2.7 copper resistance protein D compare
BWI76_RS14970 +0.8 1.0 pyrroline-5-carboxylate reductase compare
BWI76_RS09535 +0.8 3.2 N-acetylmuramoyl-L-alanine amidase amid compare
BWI76_RS02255 +0.8 1.3 chaperone-modulator protein CbpM compare
BWI76_RS14050 +0.8 1.5 AP endonuclease, family 2 compare
BWI76_RS10430 +0.8 1.5 thiol:disulfide interchange protein DsbG compare
BWI76_RS17085 +0.8 2.2 hypothetical protein compare
BWI76_RS12480 +0.8 2.0 TIGR01620 family protein compare
BWI76_RS26890 +0.8 0.9 hypothetical protein compare
BWI76_RS27240 +0.8 3.4 hypothetical protein compare
BWI76_RS12235 +0.8 1.5 hypothetical protein compare
BWI76_RS14410 +0.8 1.4 hypothetical protein compare
BWI76_RS25375 +0.8 1.3 hypothetical protein compare
BWI76_RS02745 +0.8 0.7 hypothetical protein compare
BWI76_RS23885 +0.8 0.5 2-octaprenylphenol hydroxylase compare
BWI76_RS19405 +0.8 2.1 LysR family transcriptional regulator compare
BWI76_RS10735 +0.8 1.5 hypothetical protein compare
BWI76_RS16210 +0.8 0.6 hypothetical protein compare
BWI76_RS04155 +0.8 2.4 membrane protein compare
BWI76_RS02810 +0.8 1.9 sugar ABC transporter permease YjfF compare
BWI76_RS15850 +0.8 1.5 DUF1317 domain-containing protein compare
BWI76_RS13980 +0.7 0.8 hypothetical protein compare
BWI76_RS19860 +0.7 1.4 hypothetical protein compare
BWI76_RS15205 +0.7 2.0 succinate-semialdehyde dehydrogenase compare
BWI76_RS13175 +0.7 1.6 NodT family RND efflux system outer membrane lipoprotein compare
BWI76_RS07725 +0.7 0.7 iron-enterobactin transporter permease compare
BWI76_RS27045 +0.7 3.4 XylR family transcriptional regulator compare
BWI76_RS24110 +0.7 0.8 YggU family protein compare
BWI76_RS05430 +0.7 1.7 UbiE/COQ5 family methyltransferase compare
BWI76_RS05555 +0.7 2.1 Crl family RNA polymerase assembly factor compare
BWI76_RS01030 +0.7 3.6 cytosine/purine, uracil, thiamine, allantoin permease family protein compare
BWI76_RS10490 +0.7 2.4 vanillate O-demethylase oxygenase subunit compare
BWI76_RS01815 +0.7 1.5 phosphate-starvation-inducible protein PsiE compare
BWI76_RS13215 +0.7 0.9 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS20785 +0.7 0.7 ethanolamine utilization protein EutJ compare
BWI76_RS15915 +0.7 2.4 YnfC family lipoprotein compare
BWI76_RS10560 +0.7 2.2 gamma-glutamyltransferase compare
BWI76_RS15295 +0.7 1.5 MDR efflux pump AcrAB transcriptional activator MarA compare
BWI76_RS10275 +0.7 2.8 ABC transporter compare
BWI76_RS21495 +0.7 1.9 outer membrane lipoprotein compare
BWI76_RS11790 +0.7 1.4 acyl-CoA thioesterase compare
BWI76_RS12520 +0.7 2.4 hypothetical protein compare
BWI76_RS16335 +0.7 0.9 division septum protein Blr compare
BWI76_RS14775 +0.7 0.9 creatinine amidohydrolase compare
BWI76_RS07025 +0.7 2.3 glycerate kinase II compare
BWI76_RS20765 +0.7 1.9 ethanolamine ammonia lyase large subunit compare
BWI76_RS26350 +0.7 2.1 branched chain amino acid ABC transporter substrate-binding protein compare
BWI76_RS09520 +0.7 1.1 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS16760 +0.7 2.0 lipase compare
BWI76_RS20800 +0.7 1.3 carboxysome shell protein compare
BWI76_RS16820 +0.7 1.7 iron ABC transporter compare
BWI76_RS07075 +0.7 2.0 hypothetical protein compare
BWI76_RS07595 +0.7 1.1 putative oxidoreductase compare
BWI76_RS01565 +0.7 1.1 NADH pyrophosphatase compare
BWI76_RS27395 +0.7 1.7 hypothetical protein compare
BWI76_RS02690 +0.7 1.1 hypothetical protein compare
BWI76_RS26140 +0.7 1.5 GMP/IMP nucleotidase compare
BWI76_RS16880 +0.7 1.3 GlpE family protein compare
BWI76_RS11875 +0.7 2.7 hypothetical protein compare
BWI76_RS14415 +0.7 0.9 transcriptional regulator, TetR family protein compare
BWI76_RS06665 +0.7 2.3 membrane protein compare
BWI76_RS11525 +0.7 1.4 HNH endonuclease compare
BWI76_RS27455 +0.7 1.7 DUF805 domain-containing protein compare
BWI76_RS10770 +0.7 2.1 pyrimidine utilization protein C compare
BWI76_RS02045 +0.7 1.7 LysR family transcriptional regulator compare
BWI76_RS13065 +0.7 1.8 LysR family transcriptional regulator compare
BWI76_RS24335 +0.7 2.6 two-component system response regulator QseB compare
BWI76_RS12565 +0.7 3.0 SAM-dependent methyltransferase compare
BWI76_RS25630 +0.7 1.2 hypothetical protein compare
BWI76_RS14225 +0.7 1.8 anti-ECF sigma factor ChrR compare
BWI76_RS26305 +0.7 2.3 sn-glycerol-3-phosphate ABC transporter substrate-binding protein compare
BWI76_RS06200 +0.7 1.5 hypothetical protein compare
BWI76_RS22815 +0.7 3.2 hybrid sensor histidine kinase/response regulator compare
BWI76_RS06425 +0.6 2.4 MFS transporter compare
BWI76_RS07525 +0.6 1.6 ABC transporter permease compare
BWI76_RS16015 +0.6 1.2 pheromone autoinducer 2 transporter compare
BWI76_RS07475 +0.6 0.9 DNA-binding transcriptional regulator RamA compare
BWI76_RS15970 +0.6 1.4 carboxypeptidase M32 compare
BWI76_RS18335 +0.6 3.5 DNA-binding response regulator compare
BWI76_RS24775 +0.6 1.9 hypothetical protein compare
BWI76_RS16495 +0.6 1.5 endopeptidase compare
BWI76_RS09390 +0.6 1.7 phage tail protein compare
BWI76_RS11455 +0.6 1.6 AraC family transcriptional regulator compare
BWI76_RS08770 +0.6 2.3 malonyl-ACP O-methyltransferase BioC compare
BWI76_RS21995 +0.6 3.0 transcriptional regulator compare
BWI76_RS26625 +0.6 1.8 gluconate transporter periplasmic gluconate-binding protein compare
BWI76_RS26285 +0.6 1.8 glycerophosphodiester phosphodiesterase compare
BWI76_RS23760 +0.6 0.9 tRNA-Gly compare
BWI76_RS23520 +0.6 0.8 hypothetical protein compare
BWI76_RS01630 +0.6 0.6 16S ribosomal RNA compare
BWI76_RS23255 +0.6 2.2 prepilin-type cleavage/methylation domain-containing protein compare
BWI76_RS26185 +0.6 0.9 thiosulfate sulfurtransferase compare
BWI76_RS20960 +0.6 1.9 ROK family protein compare
BWI76_RS19695 +0.6 1.1 membrane protein compare
BWI76_RS02655 +0.6 1.4 hypothetical protein compare
BWI76_RS16000 +0.6 0.8 multidrug transporter subunit MdtI compare
BWI76_RS00375 +0.6 1.6 hypothetical protein compare
BWI76_RS04805 +0.6 1.6 8-oxo-dGTP diphosphatase compare
BWI76_RS12475 +0.6 2.1 hypothetical protein compare
BWI76_RS24720 +0.6 1.1 hypothetical protein compare
BWI76_RS20915 +0.6 3.8 peroxiredoxin compare
BWI76_RS12795 +0.6 2.1 DedA family protein compare
BWI76_RS19190 +0.6 1.0 oligopeptide/dipeptide ABC transporter ATPase compare
BWI76_RS25000 +0.6 0.8 malonate decarboxylase acyl carrier protein compare
BWI76_RS18390 +0.6 1.0 hypothetical protein compare
BWI76_RS03620 +0.6 2.7 TetR family transcriptional regulator compare
BWI76_RS13320 +0.6 1.1 putative LpxA-like enzyme compare
BWI76_RS14610 +0.6 1.9 putative hydrolase compare
BWI76_RS20565 +0.6 1.1 hypothetical protein compare
BWI76_RS08510 +0.6 1.5 cyd operon protein YbgE compare
BWI76_RS01100 +0.6 1.3 dTDP-glucose 4,6-dehydratase compare
BWI76_RS24155 +0.6 1.7 A/G-specific adenine glycosylase compare
BWI76_RS19525 +0.6 2.0 D-alanyl-D-alanine endopeptidase compare
BWI76_RS18595 +0.6 1.8 hypothetical protein compare
BWI76_RS14740 +0.6 1.2 LysR family transcriptional regulator compare
BWI76_RS17900 +0.6 3.3 PTS mannose transporter subunit IID compare
BWI76_RS24575 +0.6 0.9 hypothetical protein compare
BWI76_RS07995 +0.6 1.7 twin-arginine translocase subunit TatA compare
BWI76_RS21245 +0.6 1.1 nitrogen regulatory protein P-II compare
BWI76_RS03925 +0.6 1.9 N-acetyltransferase GCN5 compare
BWI76_RS16570 +0.6 2.3 catalase compare
BWI76_RS16510 +0.6 1.7 transcriptional repressor PurR compare
BWI76_RS01285 +0.6 1.6 amino acid ABC transporter substrate-binding protein compare
BWI76_RS12575 +0.6 1.8 FAD-dependent oxidoreductase compare
BWI76_RS11125 +0.6 0.9 metal-dependent hydrolase compare
BWI76_RS02560 +0.6 2.3 membrane protein compare


Specific Phenotypes

For 1 genes in this experiment

For mixed community Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella in Klebsiella michiganensis M5al

For mixed community Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella across organisms