Experiment set14IT028 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x

200 most important genes:

  gene name fitness t score description  
BWI76_RS11965 -7.2 -3.7 orotidine-5'-phosphate decarboxylase compare
BWI76_RS04250 -5.7 -6.5 homoserine kinase compare
BWI76_RS07070 -5.5 -3.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS24740 -5.5 -2.4 GntR family transcriptional regulator compare
BWI76_RS07065 -5.4 -7.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS08385 -4.9 -2.1 citrate (Si)-synthase compare
BWI76_RS21265 -4.7 -10.2 phosphoribosylformylglycinamidine synthase compare
BWI76_RS26460 -4.6 -3.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS27390 -4.6 -6.5 ribonuclease PH compare
BWI76_RS12090 -4.6 -2.0 HNH endonuclease compare
BWI76_RS05260 -4.5 -1.2 chaperone compare
BWI76_RS20965 -4.5 -3.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS21310 -4.5 -1.2 DNA repair protein RecO compare
BWI76_RS20355 -4.5 -2.4 colicin V production protein compare
BWI76_RS04465 -4.4 -4.3 carbamoyl-phosphate synthase small subunit compare
BWI76_RS21460 -4.3 -1.1 translation inhibitor protein RaiA compare
BWI76_RS09335 -4.2 -1.1 baseplate assembly protein W compare
BWI76_RS06680 -4.2 -1.1 hypothetical protein compare
BWI76_RS08520 -4.1 -1.8 colicin transporter TolQ compare
BWI76_RS01630 -4.1 -1.1 16S ribosomal RNA compare
BWI76_RS05840 -4.0 -2.7 glutamate 5-kinase compare
BWI76_RS10990 -4.0 -2.4 dihydroorotase compare
BWI76_RS22690 -4.0 -2.3 adenylyl-sulfate kinase compare
BWI76_RS15350 -3.9 -1.0 hypothetical protein compare
BWI76_RS19495 -3.9 -1.0 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS22760 -3.9 -6.4 sulfite reductase subunit beta compare
BWI76_RS09910 -3.8 -14.8 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS13755 -3.8 -1.4 hypothetical protein compare
BWI76_RS04525 -3.8 -1.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS05015 -3.6 -1.9 transcriptional regulator compare
BWI76_RS11300 -3.6 -0.9 cupin compare
BWI76_RS21070 -3.6 -1.6 outer membrane protein assembly factor BamB compare
BWI76_RS21565 -3.6 -0.9 outer membrane protein assembly factor BamE compare
BWI76_RS23265 -3.6 -1.9 hypothetical protein compare
BWI76_RS23220 -3.5 -7.6 amino-acid N-acetyltransferase compare
BWI76_RS18920 -3.5 -2.2 ATP phosphoribosyltransferase compare
BWI76_RS04470 -3.5 -7.7 carbamoyl phosphate synthase large subunit compare
BWI76_RS27385 -3.5 -7.2 orotate phosphoribosyltransferase compare
BWI76_RS08530 -3.5 -1.3 protein TolA compare
BWI76_RS26470 -3.5 -4.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS21235 -3.4 -0.9 hypothetical protein compare
BWI76_RS25920 -3.4 -1.5 peptidylprolyl isomerase compare
BWI76_RS18930 -3.4 -3.4 histidinol-phosphate transaminase compare
BWI76_RS19770 -3.4 -1.2 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS01615 -3.3 -7.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS10745 -3.3 -0.9 hypothetical protein compare
BWI76_RS20350 -3.3 -7.8 amidophosphoribosyltransferase compare
BWI76_RS00785 -3.3 -5.0 cystathionine gamma-synthase compare
BWI76_RS19375 -3.3 -1.5 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS04240 -3.3 -1.4 thr operon leader peptide compare
BWI76_RS05515 -3.3 -3.4 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
BWI76_RS05835 -3.3 -1.7 gamma-glutamyl-phosphate reductase compare
BWI76_RS01610 -3.2 -5.6 phosphoribosylamine--glycine ligase compare
BWI76_RS23365 -3.2 -4.4 LysR family transcriptional regulator compare
BWI76_RS00835 -3.2 -10.3 phosphoenolpyruvate carboxylase compare
BWI76_RS21570 -3.2 -1.6 RnfH family protein compare
BWI76_RS04645 -3.1 -2.1 3-dehydroquinase compare
BWI76_RS23920 -3.1 -1.8 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS14375 -3.1 -3.7 hypothetical protein compare
BWI76_RS08525 -3.1 -1.3 colicin transporter compare
BWI76_RS27425 -3.1 -1.4 DNA-directed RNA polymerase subunit omega compare
BWI76_RS16965 -3.1 -2.0 murein lipoprotein compare
BWI76_RS09755 -3.0 -2.1 phosphoserine transaminase compare
BWI76_RS11840 -3.0 -4.9 tryptophan synthase subunit alpha compare
BWI76_RS07465 -3.0 -1.1 TetR family transcriptional regulator compare
BWI76_RS04255 -3.0 -9.1 threonine synthase compare
BWI76_RS00875 -3.0 -4.0 DNA-binding transcriptional regulator FabR compare
BWI76_RS00845 -3.0 -9.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS17975 -2.9 -3.9 tail-specific protease compare
BWI76_RS05120 -2.9 -5.7 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS00965 -2.9 -0.7 acetolactate synthase 2 small subunit compare
BWI76_RS24605 -2.9 -3.4 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS19010 -2.9 -1.9 polysaccharide pyruvyl transferase yvff compare
BWI76_RS06535 -2.8 -1.9 endopeptidase La compare
BWI76_RS01095 -2.8 -1.8 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS00855 -2.8 -7.5 argininosuccinate lyase compare
BWI76_RS18935 -2.8 -5.0 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS20490 -2.8 -1.9 hypothetical protein compare
BWI76_RS01350 -2.8 -0.7 NAD(P)H-flavin reductase compare
BWI76_RS14390 -2.7 -1.0 hypothetical protein compare
BWI76_RS09640 -2.7 -1.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS18940 -2.7 -2.8 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS01800 -2.7 -1.8 glucose-6-phosphate isomerase compare
BWI76_RS15825 -2.7 -0.9 hypothetical protein compare
BWI76_RS04245 -2.7 -8.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS08535 -2.7 -1.2 translocation protein TolB compare
BWI76_RS18955 -2.7 -3.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS26455 -2.7 -2.0 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS21580 -2.6 -1.2 SsrA-binding protein compare
BWI76_RS09645 -2.6 -0.7 thioredoxin-disulfide reductase compare
BWI76_RS22805 -2.6 -6.4 GTP diphosphokinase compare
BWI76_RS26620 -2.6 -0.7 Fe-S biogenesis protein NfuA compare
BWI76_RS25645 -2.6 -4.8 shikimate dehydrogenase compare
BWI76_RS20380 -2.6 -0.7 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS20150 -2.6 -2.2 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS09735 -2.5 -3.5 formate acetyltransferase compare
BWI76_RS20785 -2.5 -1.1 ethanolamine utilization protein EutJ compare
BWI76_RS00345 -2.5 -3.4 protein disulfide oxidoreductase DsbA compare
BWI76_RS20895 -2.5 -2.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS21475 -2.5 -2.1 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS13820 -2.5 -1.4 hypothetical protein compare
BWI76_RS01110 -2.5 -3.8 TDP-fucosamine acetyltransferase compare
BWI76_RS04160 -2.4 -2.4 phosphoserine phosphatase compare
BWI76_RS24580 -2.4 -1.6 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS21370 -2.4 -0.8 ATP-dependent RNA helicase SrmB compare
BWI76_RS08720 -2.3 -1.7 imidazolonepropionase compare
BWI76_RS04515 -2.3 -1.0 Co2+/Mg2+ efflux protein ApaG compare
BWI76_RS00990 -2.3 -6.0 ketol-acid reductoisomerase compare
BWI76_RS24285 -2.3 -4.2 cystathionine beta-lyase compare
BWI76_RS03010 -2.3 -5.4 ornithine carbamoyltransferase compare
BWI76_RS25115 -2.3 -5.6 argininosuccinate synthase compare
BWI76_RS12045 -2.3 -2.0 hypothetical protein compare
BWI76_RS01220 -2.3 -5.1 DNA-dependent helicase II compare
BWI76_RS00240 -2.3 -1.2 FMN-binding protein MioC compare
BWI76_RS00975 -2.3 -8.0 dihydroxy-acid dehydratase compare
BWI76_RS00850 -2.3 -5.6 acetylglutamate kinase compare
BWI76_RS17300 -2.3 -0.8 tRNA-Tyr compare
BWI76_RS17980 -2.3 -3.4 RNA chaperone ProQ compare
BWI76_RS08020 -2.2 -3.5 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS18430 -2.2 -2.6 hypothetical protein compare
BWI76_RS16920 -2.2 -1.1 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS08040 -2.2 -1.7 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS00980 -2.2 -5.7 PLP-dependent threonine dehydratase compare
BWI76_RS12495 -2.2 -1.0 2-Cys peroxiredoxin compare
BWI76_RS00805 -2.2 -2.9 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS22765 -2.2 -6.7 sulfite reductase subunit alpha compare
BWI76_RS03660 -2.1 -2.5 hypothetical protein compare
BWI76_RS15360 -2.1 -2.2 hypothetical protein compare
BWI76_RS26390 -2.1 -4.3 cell division protein FtsX compare
BWI76_RS04665 -2.1 -11.6 3-isopropylmalate dehydratase small subunit compare
BWI76_RS21465 -2.1 -3.2 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS18950 -2.1 -2.8 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS09655 -2.1 -4.1 leucine-responsive regulatory protein compare
BWI76_RS27820 -2.1 -0.7 ilvB operon leader peptide IvbL compare
BWI76_RS04715 -2.1 -1.5 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS06635 -2.1 -2.2 methylated-DNA--protein-cysteine methyltransferase compare
BWI76_RS22755 -2.1 -3.3 phosphoadenosine phosphosulfate reductase compare
BWI76_RS23360 -2.1 -1.0 diaminopimelate decarboxylase compare
BWI76_RS16935 -2.0 -1.3 shikimate dehydrogenase compare
BWI76_RS18925 -2.0 -2.8 histidinol dehydrogenase compare
BWI76_RS09730 -2.0 -0.7 pyruvate formate lyase 1-activating protein compare
BWI76_RS09760 -2.0 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS23885 -2.0 -0.7 2-octaprenylphenol hydroxylase compare
BWI76_RS02530 -1.9 -1.1 tRNA dimethylallyltransferase compare
BWI76_RS26200 -1.9 -4.2 starch synthase compare
BWI76_RS01655 -1.9 -5.1 homoserine O-succinyltransferase compare
BWI76_RS25320 -1.9 -7.8 glutamate synthase compare
BWI76_RS16425 -1.9 -2.7 hypothetical protein compare
BWI76_RS04670 -1.9 -7.4 3-isopropylmalate dehydratase large subunit compare
BWI76_RS06475 -1.9 -1.2 protoheme IX farnesyltransferase compare
BWI76_RS12450 -1.9 -2.4 phage shock protein PspA compare
BWI76_RS15565 -1.9 -2.7 hypothetical protein compare
BWI76_RS10640 -1.9 -2.6 AraC family transcriptional regulator compare
BWI76_RS24920 -1.8 -1.6 YraN family protein compare
BWI76_RS08425 -1.8 -2.7 succinyl-CoA ligase subunit beta compare
BWI76_RS00180 -1.8 -0.6 F0F1 ATP synthase subunit epsilon compare
BWI76_RS09670 -1.8 -2.9 recombination factor protein RarA compare
BWI76_RS24340 -1.8 -4.6 two-component sensor histidine kinase compare
BWI76_RS23285 -1.8 -1.6 hypothetical protein compare
BWI76_RS05235 -1.8 -0.8 hypothetical protein compare
BWI76_RS11820 -1.8 -1.2 short-chain dehydrogenase/reductase SDR compare
BWI76_RS01115 -1.8 -1.3 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS20970 -1.8 -1.3 phosphoribosylglycinamide formyltransferase compare
BWI76_RS25070 -1.8 -1.1 hypothetical protein compare
BWI76_RS03080 -1.7 -3.1 (Fe-S)-cluster assembly protein compare
BWI76_RS18815 -1.7 -1.4 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS15535 -1.7 -1.8 hypothetical protein compare
BWI76_RS11845 -1.7 -2.1 tryptophan synthase subunit beta compare
BWI76_RS26000 -1.7 -4.0 aspartate aminotransferase family protein compare
BWI76_RS15635 -1.7 -3.1 hypothetical protein compare
BWI76_RS04685 -1.7 -3.8 putative leucine operon leader peptide compare
BWI76_RS19460 -1.7 -1.5 lipoprotein compare
BWI76_RS08500 -1.7 -1.9 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS08750 -1.7 -1.2 kinase inhibitor compare
BWI76_RS12340 -1.7 -2.6 molecular chaperone Tir compare
BWI76_RS16230 -1.7 -1.1 dihydromonapterin reductase compare
BWI76_RS25315 -1.6 -5.7 glutamate synthase large subunit compare
BWI76_RS12405 -1.6 -4.7 diguanylate phosphodiesterase compare
BWI76_RS20280 -1.6 -3.3 phosphodiesterase compare
BWI76_RS26245 -1.6 -3.1 transcriptional regulator compare
BWI76_RS19615 -1.6 -2.5 vancomycin high temperature exclusion protein compare
BWI76_RS05005 -1.6 -1.8 polynucleotide adenylyltransferase compare
BWI76_RS20795 -1.6 -1.1 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS17920 -1.6 -2.5 23S rRNA (guanine(745)-N(1))-methyltransferase compare
BWI76_RS26395 -1.6 -3.9 cell division protein FtsE compare
BWI76_RS08205 -1.6 -3.2 DNA-binding transcriptional dual regulator NagC compare
BWI76_RS09825 -1.6 -3.1 envelope biogenesis factor ElyC compare
BWI76_RS18755 -1.6 -0.9 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS01885 -1.6 -1.1 CsbD family protein compare
BWI76_RS04675 -1.6 -3.3 3-isopropylmalate dehydrogenase compare
BWI76_RS13975 -1.6 -1.7 urea carboxylase compare
BWI76_RS04680 -1.6 -5.8 2-isopropylmalate synthase compare
BWI76_RS24900 -1.6 -0.8 DeoR family transcriptional regulator compare
BWI76_RS27440 -1.6 -1.1 DNA helicase RecG compare
BWI76_RS24075 -1.6 -2.3 glutathione synthase compare
BWI76_RS24595 -1.6 -1.9 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS12470 -1.6 -1.3 thiosulfate sulfurtransferase PspE compare
BWI76_RS14415 -1.6 -1.8 transcriptional regulator, TetR family protein compare
BWI76_RS01080 -1.6 -4.3 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS10930 -1.5 -3.3 glucan biosynthesis protein G compare


Specific Phenotypes

For 1 genes in this experiment

For mixed community Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella in Klebsiella michiganensis M5al

For mixed community Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella across organisms