Experiment set14IT028 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS21375 +2.3 1.8 autonomous glycyl radical cofactor GrcA compare
BWI76_RS07780 +1.9 2.2 hypothetical protein compare
BWI76_RS03595 +1.6 2.8 ethanolamine utilization protein EutM compare
BWI76_RS00025 +1.5 1.6 hypothetical protein compare
BWI76_RS20050 +1.5 2.8 hypothetical protein compare
BWI76_RS23895 +1.5 1.3 Xaa-Pro aminopeptidase compare
BWI76_RS18360 +1.4 2.6 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS11430 +1.4 1.2 lipoprotein compare
BWI76_RS23195 +1.4 3.0 ethanolamine utilization protein EutP compare
BWI76_RS26405 +1.4 1.3 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS11900 +1.4 1.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS07165 +1.4 3.6 hypothetical protein compare
BWI76_RS11235 +1.4 1.9 hypothetical protein compare
BWI76_RS27240 +1.3 6.6 hypothetical protein compare
BWI76_RS14805 +1.3 1.9 hypothetical protein compare
BWI76_RS20430 +1.3 3.4 penicillin-insensitive murein endopeptidase compare
BWI76_RS20900 +1.2 1.3 outer membrane protein assembly factor BamC compare
BWI76_RS07985 +1.2 1.1 fluoride ion transporter CrcB compare
BWI76_RS12875 +1.2 2.3 bifunctional deaminase-reductase compare
BWI76_RS20375 +1.2 1.8 membrane protein compare
BWI76_RS13250 +1.2 1.6 cytochrome b561 compare
BWI76_RS07730 +1.2 0.7 iron-enterobactin transporter membrane protein compare
BWI76_RS15035 +1.2 1.5 metal ABC transporter permease compare
BWI76_RS21675 +1.2 0.9 hypothetical protein compare
BWI76_RS03045 +1.1 1.6 hypothetical protein compare
BWI76_RS08980 +1.1 1.4 DNA starvation/stationary phase protection protein compare
BWI76_RS04840 +1.1 2.8 prepilin peptidase-dependent pilin compare
BWI76_RS16510 +1.1 2.9 transcriptional repressor PurR compare
BWI76_RS23320 +1.1 1.4 hypothetical protein compare
BWI76_RS14980 +1.1 0.9 hypothetical protein compare
BWI76_RS10755 +1.1 1.5 pyrimidine utilization flavin reductase protein F compare
BWI76_RS22205 +1.1 1.1 cation ABC transporter ATP-binding protein compare
BWI76_RS14540 +1.1 2.7 yersiniabactin biosynthetic protein YbtU compare
BWI76_RS00725 +1.1 3.1 periplasmic repressor CpxP compare
BWI76_RS25545 +1.1 2.7 hypothetical protein compare
BWI76_RS15260 +1.1 1.1 hypothetical protein compare
BWI76_RS11515 +1.1 1.0 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS11815 +1.1 1.1 hypothetical protein compare
BWI76_RS15950 +1.0 1.2 dethiobiotin synthase compare
BWI76_RS11520 +1.0 1.0 hypothetical protein compare
BWI76_RS03040 +1.0 2.4 leucyl aminopeptidase compare
BWI76_RS11680 +1.0 4.2 succinylglutamate-semialdehyde dehydrogenase compare
BWI76_RS17310 +1.0 1.6 AsnC family transcriptional regulator compare
BWI76_RS20925 +1.0 1.9 peptidase M48 compare
BWI76_RS05800 +1.0 2.1 phage transcriptional activator, Ogr/delta compare
BWI76_RS23915 +1.0 1.3 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS01000 +1.0 2.6 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS24035 +1.0 2.3 hypothetical protein compare
BWI76_RS21165 +1.0 1.2 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS16335 +1.0 1.3 division septum protein Blr compare
BWI76_RS24500 +1.0 2.3 urease subunit gamma compare
BWI76_RS14970 +1.0 1.3 pyrroline-5-carboxylate reductase compare
BWI76_RS10365 +1.0 3.0 class IV aminotransferase compare
BWI76_RS13480 +1.0 0.9 XRE family transcriptional regulator compare
BWI76_RS13330 +1.0 1.2 tellurite resistance methyltransferase TehB compare
BWI76_RS05950 +1.0 1.4 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS01565 +0.9 1.6 NADH pyrophosphatase compare
BWI76_RS22300 +0.9 1.9 hydrogenase 3 maturation endopeptidase HyCI compare
BWI76_RS00430 +0.9 3.2 GNAT family N-acetyltransferase compare
BWI76_RS16955 +0.9 0.8 hypothetical protein compare
BWI76_RS23705 +0.9 2.2 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS23760 +0.9 1.3 tRNA-Gly compare
BWI76_RS10750 +0.9 3.1 pyrimidine utilization transport protein G compare
BWI76_RS19240 +0.9 1.4 ABC transporter substrate-binding protein compare
BWI76_RS12910 +0.9 2.8 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
BWI76_RS24775 +0.9 2.8 hypothetical protein compare
BWI76_RS06075 +0.9 1.2 taurine transporter subunit compare
BWI76_RS00080 +0.9 1.8 N-acetylmannosamine kinase compare
BWI76_RS20230 +0.9 0.8 hypothetical protein compare
BWI76_RS04560 +0.9 2.0 holo-ACP synthase CitX compare
BWI76_RS13660 +0.9 1.8 nitrate reductase subunit beta compare
BWI76_RS01195 +0.9 1.0 membrane protein compare
BWI76_RS12665 +0.9 1.6 hypothetical protein compare
BWI76_RS06200 +0.9 2.0 hypothetical protein compare
BWI76_RS15980 +0.9 1.8 lysine transporter LysE compare
BWI76_RS19310 +0.9 2.1 ABC transporter permease compare
BWI76_RS00140 +0.9 1.0 phosphate transport system regulator PhoU compare
BWI76_RS24515 +0.9 3.4 urease accessory protein UreE compare
BWI76_RS01205 +0.9 1.3 DUF484 family protein compare
BWI76_RS25000 +0.9 1.2 malonate decarboxylase acyl carrier protein compare
BWI76_RS19405 +0.9 2.6 LysR family transcriptional regulator compare
BWI76_RS25970 +0.9 2.1 hypothetical protein compare
BWI76_RS11345 +0.9 2.4 LysR family transcriptional regulator compare
BWI76_RS19590 +0.9 2.2 MFS transporter compare
BWI76_RS14610 +0.9 2.3 putative hydrolase compare
BWI76_RS18735 +0.9 2.5 tautomerase family protein compare
BWI76_RS14410 +0.9 1.4 hypothetical protein compare
BWI76_RS16520 +0.9 1.1 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS07640 +0.8 0.9 short chain dehydrogenase compare
BWI76_RS13095 +0.8 1.4 phenylacetate-CoA oxygenase subunit PaaB compare
BWI76_RS20960 +0.8 3.1 ROK family protein compare
BWI76_RS00075 +0.8 2.1 N-acetylmannosamine-6-phosphate 2-epimerase compare
BWI76_RS22635 +0.8 2.6 MFS transporter compare
BWI76_RS19700 +0.8 1.1 deoxyribonuclease IV compare
BWI76_RS18305 +0.8 2.6 dihydrodipicolinate synthase family protein compare
BWI76_RS11790 +0.8 1.6 acyl-CoA thioesterase compare
BWI76_RS02695 +0.8 1.4 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS18580 +0.8 1.8 hypothetical protein compare
BWI76_RS07920 +0.8 2.1 methionine aminotransferase compare
BWI76_RS05955 +0.8 1.9 ABC transporter compare
BWI76_RS15030 +0.8 2.1 ABC transporter compare
BWI76_RS14925 +0.8 1.8 ABC transporter substrate-binding protein compare
BWI76_RS08745 +0.8 1.5 proline-specific permease compare
BWI76_RS14780 +0.8 2.1 phosphotriesterase compare
BWI76_RS25365 +0.8 3.9 serine endoprotease DegQ compare
BWI76_RS15075 +0.8 2.5 non-ribosomal peptide synthase compare
BWI76_RS07595 +0.8 1.5 putative oxidoreductase compare
BWI76_RS08835 +0.8 2.5 molybdopterin guanine dinucleotide biosynthesis protein MoaE compare
BWI76_RS21390 +0.8 1.1 thiol disulfide reductase thioredoxin compare
BWI76_RS08855 +0.8 1.3 endonuclease/exonuclease/phosphatase compare
BWI76_RS13880 +0.8 2.5 lysine transporter LysE compare
BWI76_RS14870 +0.8 0.6 hypothetical protein compare
BWI76_RS26095 +0.8 0.6 shikimate kinase compare
BWI76_RS03605 +0.8 2.2 BMC domain-containing protein compare
BWI76_RS18175 +0.8 2.3 hydrolase compare
BWI76_RS07255 +0.8 1.7 hypothetical protein compare
BWI76_RS18810 +0.8 2.4 nitrogenase iron protein compare
BWI76_RS14615 +0.8 1.1 hypothetical protein compare
BWI76_RS27835 +0.8 1.1 acyltransferase compare
BWI76_RS13320 +0.8 1.4 putative LpxA-like enzyme compare
BWI76_RS13180 +0.8 1.3 multidrug transporter EmrA compare
BWI76_RS24060 +0.8 2.2 SprT family protein compare
BWI76_RS12825 +0.8 1.6 hypothetical protein compare
BWI76_RS10035 +0.8 1.0 hypothetical protein compare
BWI76_RS10725 +0.8 2.0 hypothetical protein compare
BWI76_RS23250 +0.8 1.7 hypothetical protein compare
BWI76_RS19520 +0.8 3.6 acetyltransferase GCN5 compare
BWI76_RS12605 +0.8 2.0 hypothetical protein compare
BWI76_RS20020 +0.8 1.7 nucleoside triphosphatase NudI compare
BWI76_RS06235 +0.8 2.6 PAS domain-containing sensor histidine kinase compare
BWI76_RS24810 +0.8 2.3 hypothetical protein compare
BWI76_RS15190 +0.8 2.2 GGDEF domain-containing protein compare
BWI76_RS05975 +0.8 2.6 ABC transporter ATP-binding protein compare
BWI76_RS03620 +0.8 2.2 TetR family transcriptional regulator compare
BWI76_RS19865 +0.8 1.1 ecotin compare
BWI76_RS15200 +0.8 2.2 glutaminase compare
BWI76_RS11250 +0.8 0.8 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS14575 +0.7 1.5 TENA/THI-4 family protein compare
BWI76_RS12855 +0.7 1.3 enamine deaminase RidA compare
BWI76_RS18550 +0.7 1.0 tRNA-Asn compare
BWI76_RS12785 +0.7 2.6 heat-shock protein HslJ compare
BWI76_RS16035 +0.7 2.0 biotin-independent malonate decarboxylase subunit beta compare
BWI76_RS12520 +0.7 2.3 hypothetical protein compare
BWI76_RS15890 +0.7 2.1 Zn-dependent oxidoreductase compare
BWI76_RS11755 +0.7 1.9 catalase HPII compare
BWI76_RS11390 +0.7 0.9 iron dicitrate transport regulator FecR compare
BWI76_RS27520 +0.7 2.2 sodium/glutamate symporter compare
BWI76_RS14775 +0.7 0.9 creatinine amidohydrolase compare
BWI76_RS18135 +0.7 1.8 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS14030 +0.7 2.0 ABC transporter permease compare
BWI76_RS03120 +0.7 3.5 ABC transporter ATP-binding protein compare
BWI76_RS22930 +0.7 2.4 L-fuculokinase (EC 2.7.1.51) (from data) compare
BWI76_RS11525 +0.7 1.8 HNH endonuclease compare
BWI76_RS14050 +0.7 1.4 AP endonuclease, family 2 compare
BWI76_RS11770 +0.7 1.0 hypothetical protein compare
BWI76_RS19480 +0.7 1.7 transcriptional regulator compare
BWI76_RS13125 +0.7 2.5 3-hydroxyacyl-CoA dehydrogenase compare
BWI76_RS04260 +0.7 2.7 peroxide stress protein YaaA compare
BWI76_RS20325 +0.7 2.9 histidine/lysine/arginine/ornithine ABC transporter permease HisM compare
BWI76_RS11685 +0.7 3.1 Succinylarginine dihydrolase (EC 3.5.3.23) (from data) compare
BWI76_RS17990 +0.7 1.8 paraquat-inducible membrane protein A compare
BWI76_RS13175 +0.7 1.5 NodT family RND efflux system outer membrane lipoprotein compare
BWI76_RS02255 +0.7 1.6 chaperone-modulator protein CbpM compare
BWI76_RS16750 +0.7 4.3 acetolactate synthase compare
BWI76_RS11780 +0.7 2.0 2-deoxyglucose-6-phosphatase compare
BWI76_RS11255 +0.7 0.9 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS14625 +0.7 1.0 protein TolA compare
BWI76_RS09065 +0.7 3.1 sugar phosphatase SupH compare
BWI76_RS10565 +0.7 2.3 sugar isomerase compare
BWI76_RS07185 +0.7 0.6 hypothetical protein compare
BWI76_RS26440 +0.7 0.7 hypothetical protein compare
BWI76_RS19850 +0.7 0.7 tRNA-Pro compare
BWI76_RS19220 +0.7 2.0 hypothetical protein compare
BWI76_RS13990 +0.7 3.0 allophanate hydrolase compare
BWI76_RS16695 +0.7 3.3 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein compare
BWI76_RS24260 +0.7 1.8 hypothetical protein compare
BWI76_RS17380 +0.7 2.3 nitrate transporter component compare
BWI76_RS08985 +0.7 2.5 threonine/homoserine exporter RhtA compare
BWI76_RS18300 +0.7 1.4 hypothetical protein compare
BWI76_RS17570 +0.7 1.0 iron-sulfur-binding protein compare
BWI76_RS11675 +0.7 1.5 arginine N-succinyltransferase compare
BWI76_RS07955 +0.7 1.5 nucleoside diphosphate kinase regulator compare
BWI76_RS10815 +0.7 1.1 iron permease compare
BWI76_RS20715 +0.7 0.9 RpoE-regulated lipoprotein compare
BWI76_RS20790 +0.7 1.9 aldehyde dehydrogenase compare
BWI76_RS07860 +0.7 1.4 cytosine permease compare
BWI76_RS09460 +0.7 1.6 spermidine/putrescine ABC transporter substrate-binding protein PotF compare
BWI76_RS19400 +0.7 2.4 NCS2 family permease compare
BWI76_RS06745 +0.7 1.1 N-acetyltransferase GCN5 compare
BWI76_RS17325 +0.7 2.2 nitrate reductase molybdenum cofactor assembly chaperone compare
BWI76_RS13205 +0.7 3.3 hypothetical protein compare
BWI76_RS22820 +0.7 2.1 glycerate kinase compare
BWI76_RS15900 +0.7 1.9 hypothetical protein compare
BWI76_RS14930 +0.7 1.1 hypothetical protein compare
BWI76_RS17345 +0.7 2.4 nitrate/nitrite two-component system sensor histidine kinase NarX compare
BWI76_RS01585 +0.7 2.6 transcriptional regulator compare
BWI76_RS15940 +0.7 1.0 DMSO reductase maturation protein DsmD compare
BWI76_RS26365 +0.7 2.8 branched chain amino acid ABC transporter substrate-binding protein compare
BWI76_RS06060 +0.7 2.5 DNA-binding response regulator compare
BWI76_RS02445 +0.7 1.3 fumarate reductase subunit C compare


Specific Phenotypes

For 1 genes in this experiment

For mixed community Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella in Klebsiella michiganensis M5al

For mixed community Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella across organisms