Experiment set14IT027 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Harmalol 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_1613 -3.8 -3.7 septum site-determining protein MinC compare
Psyr_3008 -3.6 -8.5 Undecaprenyl-diphosphatase compare
Psyr_2282 -3.0 -14.9 Hydrophobe/amphiphile efflux-1 HAE1 compare
Psyr_4341 -3.0 -11.2 thiamine-phosphate diphosphorylase compare
Psyr_4340 -2.9 -11.7 phosphomethylpyrimidine kinase, putative compare
Psyr_1544 -2.9 -6.0 SirA-like protein compare
Psyr_0917 -2.8 -12.3 ABC-2 compare
Psyr_2080 -2.8 -8.2 aminodeoxychorismate synthase, subunit I compare
Psyr_4009 -2.8 -9.3 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_4991 -2.7 -4.7 hypothetical protein compare
Psyr_4687 -2.7 -8.9 biotin synthase compare
Psyr_2283 -2.7 -6.7 Secretion protein HlyD compare
Psyr_0951 -2.6 -4.8 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1650 -2.6 -3.7 aminodeoxychorismate lyase apoprotein compare
Psyr_4581 -2.5 -5.0 anthranilate synthase, component II compare
Psyr_0918 -2.5 -13.6 ABC transporter compare
Psyr_0487 -2.3 -3.8 glutathione synthase compare
Psyr_4686 -2.2 -6.9 8-amino-7-oxononanoate synthase compare
Psyr_4627 -2.2 -3.8 dimethyladenosine transferase compare
Psyr_1371 -2.2 -7.8 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_0549 -2.1 -3.4 Metallophosphoesterase compare
Psyr_0454 -2.0 -6.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0849 -2.0 -10.2 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_0014 -1.9 -4.5 lipid A biosynthesis acyltransferase compare
Psyr_0565 -1.9 -8.1 Protein of unknown function UPF0126 compare
Psyr_1373 -1.9 -3.5 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_4740 -1.9 -7.3 thiazole-phosphate synthase compare
Psyr_0259 -1.8 -4.3 Osmolarity sensor protein envZ compare
Psyr_4091 -1.8 -4.5 8-oxo-dGTPase compare
Psyr_4203 -1.7 -2.8 SsrA-binding protein compare
Psyr_1614 -1.6 -3.8 lipid A biosynthesis acyltransferase compare
Psyr_0383 -1.6 -2.9 Twin-arginine translocation protein TatB compare
Psyr_5132 -1.5 -3.5 Glucose-inhibited division protein A subfamily compare
Psyr_0475 -1.5 -3.1 Protein of unknown function YGGT compare
Psyr_4683 -1.5 -4.0 dethiobiotin synthase compare
Psyr_2143 -1.5 -2.7 delta1-piperideine 2-carboxylate reductase compare
Psyr_3198 -1.4 -3.2 NADH dehydrogenase subunit B compare
Psyr_3681 -1.4 -2.6 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
Psyr_1944 -1.4 -2.8 Thioesterase compare
Psyr_2980 -1.4 -2.9 UDP-glucose pyrophosphorylase compare
Psyr_1748 -1.4 -4.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_1404 -1.4 -7.6 Ferritin and Dps compare
Psyr_3202 -1.3 -2.0 NADH dehydrogenase subunit G compare
Psyr_2854 -1.3 -4.1 conserved hypothetical protein compare
Psyr_1268 -1.3 -4.9 extracellular solute-binding protein, family 3:SLT compare
Psyr_3287 -1.2 -1.4 DNA topoisomerase I compare
Psyr_4194 -1.2 -4.6 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_0885 -1.2 -1.7 conserved hypothetical protein compare
Psyr_4089 -1.1 -5.1 PAS compare
Psyr_4136 -1.1 -2.9 BolA-like protein compare
Psyr_2471 -1.1 -1.5 hydroxymethylglutaryl-CoA lyase compare
Psyr_1930 -1.1 -2.4 hypothetical protein compare
Psyr_4001 -1.1 -2.7 conserved domain protein compare
Psyr_1751 -1.1 -4.0 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_1424 -1.1 -1.4 Peptidase S24, S26A and S26B compare
Psyr_0680 -1.1 -4.0 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_0215 -1.1 -6.0 Exodeoxyribonuclease III xth compare
Psyr_0255 -1.0 -2.0 glutamate-cysteine ligase compare
Psyr_5053 -1.0 -4.9 asparaginase compare
Psyr_0574 -1.0 -3.7 protease FtsH subunit HflK compare
Psyr_0831 -1.0 -2.2 Two-component response regulator CbrB compare
Psyr_4015 -1.0 -1.8 conserved domain protein compare
Psyr_3199 -1.0 -2.2 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_3581 -1.0 -4.3 ribosomal large subunit pseudouridine synthase B compare
Psyr_1668 -1.0 -4.8 amidophosphoribosyltransferase compare
Psyr_4158 -0.9 -5.7 conserved hypothetical protein compare
Psyr_0838 -0.9 -2.7 Rieske [2Fe-2S] region compare
Psyr_3262 -0.9 -1.6 dnaK suppressor protein, putative compare
Psyr_2669 -0.9 -2.3 Aminoglycoside phosphotransferase compare
Psyr_1667 -0.9 -3.7 Colicin V production protein compare
Psyr_4491 -0.9 -2.3 Deoxyribose-phosphate aldolase compare
Psyr_4566 -0.9 -5.7 Peptidase M23B compare
Psyr_4842 -0.9 -4.6 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_0791 -0.9 -1.2 MOSC compare
Psyr_1845 -0.9 -3.5 GTP cyclohydrolase I compare
Psyr_0826 -0.9 -4.6 glucose-6-phosphate isomerase compare
Psyr_3675 -0.9 -3.0 adenosylcobinamide kinase compare
Psyr_3728 -0.9 -3.5 hypothetical protein compare
Psyr_4684 -0.9 -1.9 biotin synthesis protein BioC compare
Psyr_3179 -0.9 -1.7 DNA translocase FtsK compare
Psyr_2184 -0.9 -2.4 Short-chain dehydrogenase/reductase SDR compare
Psyr_0529 -0.9 -3.4 Glycosyl transferase, group 1 compare
Psyr_2223 -0.8 -1.5 sarcosine oxidase, delta subunit compare
Psyr_2664 -0.8 -3.4 hypothetical protein compare
Psyr_4463 -0.8 -3.2 Protein of unknown function DUF193 compare
Psyr_2348 -0.8 -2.0 hypothetical protein compare
Psyr_2320 -0.8 -4.2 YD repeat protein compare
Psyr_1408 -0.8 -2.1 Holliday junction endonuclease RuvC compare
Psyr_0294 -0.8 -3.9 Exopolyphosphatase compare
Psyr_4115 -0.8 -1.7 phosphoheptose isomerase compare
Psyr_1410 -0.8 -2.7 Holliday junction DNA helicase RuvB compare
Psyr_1588 -0.8 -2.5 Putative exonuclease, RdgC compare
Psyr_0170 -0.8 -1.4 heat shock protein Hsp15 compare
Psyr_1556 -0.8 -1.4 hypothetical protein compare
Psyr_4351 -0.8 -2.9 conserved domain protein compare
Psyr_2360 -0.8 -1.3 CBS compare
Psyr_0571 -0.8 -2.4 tRNA isopentenyltransferase compare
Psyr_4008 -0.8 -6.3 Hydrophobe/amphiphile efflux-1 HAE1 compare
Psyr_2112 -0.8 -1.2 Protein with unknown function DUF469 compare
Psyr_1269 -0.8 -2.1 phosphoribosylformylglycinamidine synthase compare
Psyr_0201 -0.8 -4.4 ATP-dependent DNA helicase RecG compare
Psyr_3162 -0.8 -1.7 Metalloprotease inhibitor/calysin compare
Psyr_2557 -0.8 -1.1 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_2346 -0.8 -3.0 conserved hypothetical protein compare
Psyr_5065 -0.8 -4.4 ATP-dependent DNA helicase UvrD compare
Psyr_3809 -0.8 -2.8 hypothetical protein compare
Psyr_3121 -0.8 -1.5 Protein of unknown function DUF1345 compare
Psyr_2266 -0.7 -2.2 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2855 -0.7 -3.0 methionine synthase (B12-independent) compare
Psyr_4407 -0.7 -1.7 phosphoribosylamine--glycine ligase compare
Psyr_0202 -0.7 -4.5 transcriptional regulator, LysR family compare
Psyr_3696 -0.7 -2.5 23S rRNA m(5)U-1939 methyltransferase compare
Psyr_0941 -0.7 -3.8 Conserved hypothetical protein 92 compare
Psyr_0616 -0.7 -2.1 conserved domain protein compare
Psyr_2665 -0.7 -3.4 Phenazine biosynthesis PhzC/PhzF protein compare
Psyr_0041 -0.7 -1.4 Protein of unknown function DUF1161 compare
Psyr_0579 -0.7 -4.9 RNAse R compare
Psyr_2679 -0.7 -2.0 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2688 -0.7 -3.1 conserved hypothetical protein compare
Psyr_3282 -0.7 -3.6 transcriptional regulator, TetR family compare
Psyr_1864 -0.7 -2.4 spermidine synthase compare
Psyr_0550 -0.7 -1.8 Protein of unknown function UPF0227 compare
Psyr_2039 -0.7 -1.4 Fimbrial protein compare
Psyr_1872 -0.7 -1.9 conserved hypothetical protein compare
Psyr_2200 -0.7 -1.3 UreE urease accessory, N-terminal compare
Psyr_2829 -0.7 -2.2 conserved hypothetical protein compare
Psyr_4822 -0.7 -1.5 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_2375 -0.7 -2.6 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_4512 -0.7 -3.2 putative phage-related protein compare
Psyr_1830 -0.7 -2.0 ABC transporter, transmembrane region:ABC transporter compare
Psyr_2642 -0.7 -2.2 hypothetical protein compare
Psyr_1555 -0.7 -2.7 Cobyrinic acid a,c-diamide synthase compare
Psyr_1984 -0.7 -2.2 3-isopropylmalate dehydratase, small subunit compare
Psyr_1645 -0.7 -1.8 phosphate:acyl-[acyl carrier protein] acyltransferase compare
Psyr_1747 -0.7 -2.3 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_2842 -0.7 -3.4 hypothetical protein compare
Psyr_2171 -0.7 -1.0 HpcH/HpaI aldolase compare
Psyr_3104 -0.7 -1.8 phosphate ABC transporter membrane protein 2, PhoT family compare
Psyr_2340 -0.7 -2.0 Peptidylprolyl isomerase, FKBP-type compare
Psyr_3665 -0.7 -2.3 conserved hypothetical protein compare
Psyr_3034 -0.7 -2.3 conserved hypothetical protein compare
Psyr_4144 -0.7 -1.1 Protein of unknown function DUF1239 compare
Psyr_1929 -0.7 -2.9 hypothetical protein compare
Psyr_4007 -0.7 -4.2 Secretion protein HlyD compare
Psyr_3369 -0.7 -2.0 Twin-arginine translocation pathway signal:Tat-translocated enzyme:Dyp-type peroxidase compare
Psyr_2428 -0.6 -2.6 GCN5-related N-acetyltransferase compare
Psyr_1419 -0.6 -1.4 preQ(0) biosynthesis protein QueC compare
Psyr_0827 -0.6 -2.3 pantothenate synthetase compare
Psyr_4019 -0.6 -2.5 H-NS family protein MvaT compare
Psyr_3040 -0.6 -2.1 conserved hypothetical protein compare
Psyr_1749 -0.6 -3.1 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_5129 -0.6 -2.1 chromosome segregation DNA-binding protein compare
Psyr_1829 -0.6 -2.6 conserved hypothetical protein compare
Psyr_5096 -0.6 -2.6 hypothetical protein compare
Psyr_4087 -0.6 -1.0 Protein of unknown function DUF520 compare
Psyr_1663 -0.6 -3.0 phosphoribosylanthranilate isomerase compare
Psyr_3701 -0.6 -1.6 thioredoxin, putative compare
Psyr_0830 -0.6 -3.2 Poly(A) polymerase compare
Psyr_2433 -0.6 -1.8 conserved hypothetical protein compare
Psyr_2633 -0.6 -2.9 conserved hypothetical protein compare
Psyr_2464 -0.6 -3.5 methionine synthase (B12-dependent) compare
Psyr_1670 -0.6 -2.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_1616 -0.6 -1.2 Rieske [2Fe-2S] region compare
Psyr_0491 -0.6 -1.8 chemotaxis sensory transducer compare
Psyr_4928 -0.6 -1.9 conserved hypothetical protein compare
Psyr_1378 -0.6 -1.4 RecA protein compare
Psyr_2641 -0.6 -1.8 hypothetical protein compare
Psyr_RNA78 -0.6 -2.1 5S ribosomal RNA compare
Psyr_4655 -0.6 -2.7 hypothetical protein compare
Psyr_4622 -0.6 -2.1 Nucleotidyl transferase compare
Psyr_0167 -0.6 -1.7 hypothetical protein compare
Psyr_4141 -0.6 -2.9 ABC transporter compare
Psyr_1719 -0.6 -1.2 conserved hypothetical protein compare
Psyr_2820 -0.6 -1.6 RecT protein compare
Psyr_3257 -0.6 -1.5 multisubunit potassium/proton antiporter, PhaG subunit compare
Psyr_3807 -0.6 -2.7 hypothetical protein compare
Psyr_0919 -0.6 -3.9 Chromosome segregation ATPase-like protein compare
Psyr_3660 -0.6 -1.8 conserved hypothetical protein compare
Psyr_0372 -0.6 -1.4 CDS compare
Psyr_2844 -0.6 -2.0 hypothetical protein compare
Psyr_2248 -0.6 -2.1 Phosphonate-binding periplasmic protein compare
Psyr_4316 -0.6 -1.4 conserved hypothetical protein compare
Psyr_1245 -0.6 -3.2 23S rRNA m(2)A-2503 methyltransferase compare
Psyr_3672 -0.6 -1.7 cobalamin-5'-phosphate synthase compare
Psyr_3806 -0.6 -2.2 hypothetical protein compare
Psyr_1846 -0.6 -3.1 hypothetical protein compare
Psyr_2488 -0.6 -1.6 hypothetical protein compare
Psyr_3680 -0.6 -2.2 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase compare
Psyr_2644 -0.6 -4.2 Uncharacterized protein conserved in bacteria-like protein compare
Psyr_4887 -0.6 -3.5 Peptidase S41A, C-terminal protease compare
Psyr_2826 -0.6 -2.2 hypothetical protein compare
Psyr_2804 -0.6 -1.8 hypothetical protein compare
Psyr_0426 -0.6 -1.0 lipoprotein, putative compare
Psyr_0033 -0.5 -1.9 tryptophan synthase, alpha chain compare
Psyr_0081 -0.5 -1.3 ABC transporter compare
Psyr_0464 -0.5 -1.1 hypothetical protein compare
Psyr_1372 -0.5 -2.0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_3396 -0.5 -2.3 DNA replication and repair protein RecR compare
Psyr_2807 -0.5 -0.7 NinB compare
Psyr_4257 -0.5 -2.4 Uncharacterized protein UPF0114 compare


Specific Phenotypes

For 2 genes in this experiment

For stress Harmalol in Pseudomonas syringae pv. syringae B728a

For stress Harmalol across organisms