Experiment set14IT025 for Sinorhizobium meliloti 1021

Compare to:

palatinose hydrate carbon source

200 most important genes:

  gene name fitness t score description  
SMc02572 -9.9 -6.2 imidazole glycerol phosphate synthase subunit HisH compare
SMc02766 -8.4 -11.6 tryptophan synthase subunit beta compare
SMc04405 -8.2 -5.7 3-isopropylmalate dehydrogenase compare
SMc00235 -8.1 -5.6 anthranilate phosphoribosyltransferase compare
SMc02767 -8.1 -7.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc01843 -8.0 -7.8 5,10-methylenetetrahydrofolate reductase compare
SMc02899 -8.0 -9.5 prephenate dehydratase compare
SMc03797 -7.7 -10.6 homoserine O-succinyltransferase compare
SMc01054 -7.6 -5.2 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc02569 -7.5 -5.2 imidazole glycerol phosphate synthase subunit HisF compare
SMc01726 -7.5 -5.2 acetylglutamate kinase compare
SMc00917 -7.5 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc00495 -7.4 -4.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc02245 -7.4 -5.1 dihydroorotate dehydrogenase 2 compare
SMc04045 -7.3 -7.1 dihydroxy-acid dehydratase compare
SMc00711 -7.3 -5.0 cyclohexadienyl dehydrogenase compare
SMc02717 -7.1 -8.5 2-isopropylmalate synthase compare
SMc04028 -7.1 -14.4 glutamate synthase compare
SMc00640 -7.0 -8.3 phosphoserine aminotransferase compare
SMc02725 -7.0 -10.7 anthranilate synthase compare
SMc01431 -6.9 -10.6 acetolactate synthase 3 catalytic subunit compare
SMc00614 -6.9 -6.7 phosphoribosylglycinamide formyltransferase compare
SMc00918 -6.5 -10.0 ATP phosphoribosyltransferase regulatory subunit compare
SMc03895 -6.5 -18.3 pyruvate carboxylase compare
SMa1635 -6.5 -2.5 hypothetical protein compare
SMc01494 -6.5 -12.1 phosphoserine phosphatase compare
SMc00236 -6.4 -7.5 Indole-3-glycerol phosphate synthase compare
SMc00488 -6.4 -17.0 phosphoribosylformylglycinamidine synthase II compare
SMc00993 -6.4 -10.6 phosphoribosylamine--glycine ligase compare
SMc02217 -6.4 -7.6 O-succinylhomoserine sulfhydrylase compare
SMc00494 -6.3 -2.4 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc00615 -6.3 -8.0 phosphoribosylaminoimidazole synthetase compare
SMc03823 -6.2 -11.8 isopropylmalate isomerase large subunit compare
SMc02765 -6.2 -12.0 tryptophan synthase subunit alpha compare
SMc03777 -6.2 -8.4 gamma-glutamyl phosphate reductase compare
SMc03112 -6.0 -15.7 B12-dependent methionine synthase compare
SMc00554 -6.0 -7.1 amidophosphoribosyltransferase compare
SMc01361 -6.0 -4.1 dihydroorotase compare
SMc00293 -5.9 -13.8 homoserine dehydrogenase compare
SMc04026 -5.8 -10.5 glutamate synthase compare
SMc01801 -5.8 -3.8 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc04002 -5.8 -8.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc02755 -5.7 -6.8 S-adenosyl-L-homocysteine hydrolase compare
SMc00493 -5.6 -7.7 phosphoribosylformylglycinamidine synthase I compare
SMc00412 -5.5 -3.8 orotidine 5'-phosphate decarboxylase compare
SMc01360 -5.5 -3.8 aspartate carbamoyltransferase catalytic subunit compare
SMc02570 -5.5 -5.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc03776 -5.4 -3.7 gamma-glutamyl kinase compare
SMc02574 -5.4 -7.7 imidazoleglycerol-phosphate dehydratase compare
SMc02307 -5.4 -8.2 histidinol dehydrogenase compare
SMc02123 -5.4 -4.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SM_b21175 -5.3 -4.0 phosphate uptake ABC transporter permease compare
SM_b21174 -5.3 -6.6 phosphate uptake ABC transporter permease compare
SMc02165 -5.3 -6.3 orotate phosphoribosyltransferase compare
SMc02124 -5.3 -14.3 nitrite reductase compare
SMc00131 -5.2 -13.0 transcriptional regulator compare
SMc00090 -5.2 -13.0 sulfate adenylyltransferase compare
SMc04088 -5.1 -7.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc00092 -5.1 -9.5 phosphoadenosine phosphosulfate reductase compare
SMc00876 -5.1 -7.0 ATP-binding MRP protein compare
SMc00641 -5.1 -7.8 D-3-phosphoglycerate dehydrogenase compare
SM_b20329 -5.0 -9.9 required for glucoside 3-dehydrogenase activity on raffinose or trehalose (thuA) (EC 1.1.99.13) (from data) compare
SMc03070 -5.0 -10.7 glucose-6-phosphate 1-dehydrogenase compare
SM_b20325 -5.0 -13.5 ABC transporter for D-trehalose/D-maltose/sucrose, substrate-binding component (ThuE) (from data) conserved
SMc02137 -5.0 -4.9 ornithine carbamoyltransferase compare
SMc04001 -5.0 -1.9 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc03229 -5.0 -3.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc01004 -4.9 -7.5 phosphoribosyl-AMP cyclohydrolase compare
SMc01881 -4.7 -4.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc01053 -4.6 -5.8 siroheme synthase compare
SMc00091 -4.6 -14.6 sulfate adenylyltransferase compare
SM_b20330 -4.6 -7.0 glucoside 3-dehydrogenase; active on raffinose or trehalose (thuB) (EC 1.1.99.13) (from data) conserved
SM_b20326 -4.4 -10.1 ABC transporter for D-trehalose/D-maltose/sucrose, permease component 1 (ThuF) (from data) conserved
SMc03795 -4.3 -2.3 isopropylmalate isomerase small subunit compare
SMc03826 -4.3 -2.9 argininosuccinate synthase compare
SMc02138 -4.2 -6.6 acetylornithine transaminase compare
SMc02246 -4.0 -1.5 hypothetical protein compare
SM_b20327 -3.9 -7.8 ABC transporter for D-trehalose/D-maltose/sucrose, permease component 2 (ThuG) (from data) conserved
SMc02166 -3.9 -9.9 dihydroorotase compare
SMc01880 -3.9 -3.8 pantoate--beta-alanine ligase compare
SMc02707 -3.9 -3.7 hypothetical protein compare
SMc01770 -3.9 -1.6 serine hydroxymethyltransferase compare
SMc04346 -3.8 -4.5 ketol-acid reductoisomerase compare
SMc00017 -3.8 -1.9 homoserine kinase compare
SM_b20328 -3.8 -14.4 ABC transporter for D-trehalose/D-maltose/sucrose, ATPase component (ThuK) (from data) conserved
SMc00815 -3.7 -2.8 inosine 5'-monophosphate dehydrogenase compare
SMc03979 -3.7 -2.7 glyceraldehyde-3-phosphate dehydrogenase compare
SM_b21177 -3.5 -8.2 phosphate uptake ABC transporter ATP-binding protein compare
SMc01215 -3.4 -2.3 carbamoyl phosphate synthase large subunit compare
SMc03763 -3.3 -5.5 cytosine-specific methyltransferase compare
SMc01850 -3.3 -4.9 hypothetical protein compare
SM_b21176 -3.3 -5.8 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc00294 -3.2 -9.9 aminotransferase compare
SMc03981 -3.2 -6.3 phosphoglycerate kinase compare
SMc03978 -3.2 -3.7 transketolase compare
SMc03068 -3.1 -13.8 phosphogluconate dehydratase compare
SMc01206 -2.9 -3.1 queuine tRNA-ribosyltransferase compare
SMc01569 -2.9 -1.5 carbamoyl phosphate synthase small subunit compare
SMc00405 -2.9 -8.4 hypothetical protein compare
SMc02425 -2.9 -6.3 transcriptional regulator compare
SMc01430 -2.8 -3.9 acetolactate synthase 3 regulatory subunit compare
SMc01441 -2.7 -7.1 membrane bound protease compare
SMc02164 -2.7 -4.9 fructokinase compare
SMa0789 -2.7 -6.5 GntR family transcriptional regulator compare
SMc01124 -2.6 -6.7 PII uridylyl-transferase compare
SMc02983 -2.5 -8.0 ornithine, DAP, or arginine decarboxylase compare
SMc03069 -2.4 -4.2 6-phosphogluconolactonase compare
SMc02140 -2.4 -2.5 phosphate regulon transcriptional regulatory protein compare
SMc00302 -2.3 -3.5 hypothetical protein compare
SMc01578 -2.2 -11.4 aspartate aminotransferase compare
SMc00450 -2.2 -3.2 protoheme IX farnesyltransferase compare
SMc00073 -2.0 -2.6 hypothetical protein compare
SMc01440 -1.9 -4.2 hydrolase serine protease transmembrane protein compare
SMc02833 -1.8 -2.0 penicillin-insensitive murein endopeptidase compare
SMc01147 -1.8 -4.4 coproporphyrinogen III oxidase compare
SMc02505 -1.8 -2.2 hypothetical protein compare
SMc03153 -1.8 -3.3 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
SMc02363 -1.8 -2.4 cytochrome C-type biogenesis transmembrane protein compare
SMc04005 -1.8 -8.3 pyruvate kinase compare
SMc00619 -1.7 -2.7 hypothetical protein compare
SMc03161 -1.7 -11.2 oxidoreductase compare
SMc00451 -1.7 -5.8 processing protease compare
SMc02055 -1.6 -2.1 phytoene synthase compare
SMc01028 -1.6 -10.6 phosphopyruvate hydratase compare
SMc01852 -1.6 -6.9 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMc03100 -1.6 -1.2 hypothetical protein compare
SMc02058 -1.6 -2.3 YAJC protein compare
SMc03974 -1.5 -7.2 hypothetical protein compare
SMc02147 -1.5 -6.0 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc00963 -1.5 -4.0 hypothetical protein compare
SMc00982 -1.5 -5.4 dioxygenase compare
SMc02234 -1.4 -2.6 hypothetical protein compare
SMc04213 -1.4 -2.0 diacylglycerol kinase compare
SMc02838 -1.4 -7.5 phosphoglyceromutase compare
SMc02434 -1.4 -3.0 hypothetical protein compare
SMc02142 -1.4 -4.2 phosphate transporter ATP-binding protein compare
SMc00414 -1.4 -7.8 hypothetical protein compare
SMc01208 -1.4 -2.2 peptidyl-prolyl cis-trans isomerase B protein compare
SMc04348 -1.3 -1.2 transcriptional regulator compare
SMc01842 -1.3 -1.4 methyltransferase transcription regulator protein compare
SMc02115 -1.3 -1.3 hypothetical protein compare
SMc01183 -1.3 -2.0 LexA repressor compare
SMc01043 -1.2 -6.4 nitrogen assimilation regulatory protein compare
SMa0126 -1.2 -1.5 CspA8 Cold shock family protein compare
SM_b21569 -1.2 -2.6 transcriptional regulator compare
SMc02753 -1.2 -1.8 PTS system transporter subunit IIA compare
SMc02724 -1.2 -3.7 hypothetical protein compare
SMc03924 -1.1 -7.0 glycogen synthase compare
SMc02835 -1.1 -6.0 glucokinase compare
SMc01280 -1.1 -2.5 protease compare
SMc00726 -1.1 -0.8 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc01522 -1.1 -1.6 hypothetical protein compare
SM_b20143 -1.1 -1.4 oligopeptide ABC transporter permease compare
SM_b20953 -1.1 -1.1 hypothetical protein compare
SMc00791 -1.1 -1.7 hypothetical protein compare
SMc02141 -1.1 -2.9 phosphate transporter PhoU compare
SMc01041 -1.0 -2.3 NIFR3-like protein compare
SMc00914 -1.0 -3.7 oxidoreductase compare
SMc01042 -1.0 -4.3 nitrogen regulation protein compare
SMc02858 -1.0 -0.7 chaperone protein DnaJ compare
SMc02495 -1.0 -1.8 translaldolase compare
SMc00650 -1.0 -1.7 hypothetical protein compare
SMc02985 -1.0 -4.3 hypothetical protein compare
SMc02451 -1.0 -1.8 hypothetical protein compare
SMa1700 -1.0 -1.3 hypothetical protein compare
SMc02145 -1.0 -1.2 signal peptide protein compare
SMc00334 -1.0 -1.5 cytidylate kinase compare
SMc02362 -1.0 -2.0 cytochrome c-type biogenesis protein CcmE compare
SM_b21181 -1.0 -4.7 glutaryl-CoA dehydrogenase compare
SMc02385 -1.0 -2.2 hypothetical protein compare
SMc00010 -1.0 -1.9 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc02144 -1.0 -3.1 phosphate ABC transporter permease compare
SMc03980 -0.9 -3.5 hypothetical protein compare
SMc00295 -0.9 -1.2 hypothetical protein compare
SMc01364 -0.9 -1.1 DNA topoisomerase I compare
SM_b20701 -0.9 -1.0 hypothetical protein compare
SMc01501 -0.9 -2.7 mannitol 2-dehydrogenase compare
SM_b20293 -0.9 -1.3 hypothetical protein compare
SMa1101 -0.9 -1.9 hypothetical protein compare
SMc02894 -0.9 -1.8 hypothetical protein compare
SMc01845 -0.9 -1.4 transglycosylase transmembrane protein compare
SMc01768 -0.9 -3.8 transcriptional regulator compare
SMc01187 -0.9 -1.6 rare lipoprotein A compare
SM_b20392 -0.9 -4.0 transcriptional regulator NanR compare
SMc04224 -0.9 -1.3 hypothetical protein compare
SMc02677 -0.9 -4.1 pyrroline-5-carboxylate reductase compare
SMc03061 -0.9 -6.1 ABC transporter for D-maltose/D-trehalose/sucrose, substrate-binding component (AglE) (from data) compare
SM_b20758 -0.9 -1.9 ArsR family transcriptional regulator compare
SM_b20540 -0.9 -1.1 hypothetical protein compare
SMc02544 -0.9 -0.9 hypothetical protein compare
SMa0905 -0.8 -1.3 hypothetical protein compare
SMc02102 -0.8 -2.7 hypothetical protein compare
SMc01438 -0.8 -3.6 protease precursor signal peptide protein compare
SMc01368 -0.8 -3.4 transport transmembrane protein compare
SMc02683 -0.8 -1.3 hypothetical protein compare
SMc04174 -0.8 -1.2 signal peptide protein compare
SMa1413 -0.8 -2.1 hypothetical protein compare
SM_b22023 -0.8 -1.6 molecular chaperone GroES compare
SMc02114 -0.8 -2.3 hypothetical protein compare
SMc02108 -0.8 -2.8 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source palatinose hydrate in Sinorhizobium meliloti 1021

For carbon source palatinose hydrate across organisms