Experiment set14IT023 for Pseudomonas fluorescens SBW25-INTG

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Glucose (C) and Ammonium chloride (N); with MOPS; with Sodium chloride

Group: stress
Media: MME_noNitrogen_noCarbon + D-Glucose (10 mM) + Ammonium chloride (10 mM) + Sodium Chloride (400 mM), pH=7
Culturing: PseudoSBW25_INTG_ML3, 96 deep-well microplate; 1.2 mL volume, Aerobic, at 33 (C), shaken=1200 rpm
By: Joshua Elmore on September 1, 2021
Media components: 9.1 mM Potassium phosphate dibasic trihydrate, 20 mM 3-(N-morpholino)propanesulfonic acid, 4.3 mM Sodium Chloride, 0.41 mM Magnesium Sulfate Heptahydrate, 0.07 mM Calcium chloride dihydrate, MME Trace Minerals (0.5 mg/L EDTA tetrasodium tetrahydrate salt, 2 mg/L Ferric chloride, 0.05 mg/L Boric Acid, 0.05 mg/L Zinc chloride, 0.03 mg/L copper (II) chloride dihydrate, 0.05 mg/L Manganese (II) chloride tetrahydrate, 0.05 mg/L Diammonium molybdate, 0.05 mg/L Cobalt chloride hexahydrate, 0.05 mg/L Nickel (II) chloride hexahydrate)

Specific Phenotypes

For 5 genes in this experiment

For stress D-Glucose in Pseudomonas fluorescens SBW25-INTG

For stress D-Glucose across organisms

SEED Subsystems

Subsystem #Specific
Conserved gene cluster associated with Met-tRNA formyltransferase 1
D-gluconate and ketogluconates metabolism 1
Glutathione: Redox cycle 1
Histidine Degradation 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
glutathione-peroxide redox reactions 3 2 1
L-histidine degradation I 4 4 1
L-histidine degradation II 5 5 1
L-histidine degradation III 6 4 1
L-histidine degradation VI 8 7 1