Experiment set14IT020 for Burkholderia phytofirmans PsJN

Compare to:

Vogels_fungal_media 0.1X

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17670 -7.1 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS33835 -7.0 -8.3 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS33865 -6.7 -6.5 tryptophan synthase alpha chain compare
BPHYT_RS17395 -6.4 -2.0 anthranilate synthase subunit II compare
BPHYT_RS13705 -6.4 -4.2 chorismate synthase compare
BPHYT_RS17690 -6.3 -9.4 imidazole glycerol phosphate synthase compare
BPHYT_RS16735 -5.8 -5.7 phosphogluconate dehydratase compare
BPHYT_RS17685 -5.8 -7.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS03150 -5.6 -14.1 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS14915 -5.6 -7.0 phosphoserine aminotransferase compare
BPHYT_RS01595 -5.5 -10.5 homoserine O-acetyltransferase compare
BPHYT_RS15920 -5.5 -12.2 argininosuccinate synthase compare
BPHYT_RS08955 -5.4 -7.4 homoserine dehydrogenase compare
BPHYT_RS33645 -5.2 -4.8 homoserine kinase compare
BPHYT_RS17855 -5.2 -15.4 glutamate synthase compare
BPHYT_RS12530 -5.2 -6.8 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS17890 -5.0 -2.6 shikimate kinase compare
BPHYT_RS33915 -4.9 -5.9 isopropylmalate isomerase compare
BPHYT_RS06555 -4.8 -10.4 ketol-acid reductoisomerase compare
BPHYT_RS14895 -4.8 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS13220 -4.8 -5.8 phosphomethylpyrimidine synthase compare
BPHYT_RS33900 -4.8 -9.6 3-isopropylmalate dehydrogenase compare
BPHYT_RS17405 -4.7 -1.5 indole-3-glycerol phosphate synthase compare
BPHYT_RS33840 -4.7 -7.9 amidophosphoribosyltransferase compare
BPHYT_RS09515 -4.7 -3.2 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS17675 -4.7 -2.5 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS06545 -4.7 -9.1 acetolactate synthase compare
BPHYT_RS09500 -4.5 -4.6 glucose-6-phosphate isomerase compare
BPHYT_RS15710 -4.5 -2.3 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS17390 -4.4 -15.9 anthranilate synthase subunit I compare
BPHYT_RS33880 -4.4 -9.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS16245 -4.3 -3.8 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS16835 -4.1 -4.7 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17400 -4.0 -3.8 anthranilate phosphoribosyltransferase compare
BPHYT_RS33875 -3.9 -8.4 tryptophan synthase subunit alpha compare
BPHYT_RS10100 -3.9 -4.4 dihydroxy-acid dehydratase compare
BPHYT_RS04725 -3.8 -7.1 sulfite reductase compare
BPHYT_RS06610 -3.8 -1.7 triosephosphate isomerase compare
BPHYT_RS17700 -3.8 -6.1 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS13605 -3.7 -1.1 tRNA-Pro compare
BPHYT_RS15915 -3.7 -8.6 ornithine carbamoyltransferase compare
BPHYT_RS16270 -3.7 -3.3 phosphoglycerate kinase compare
BPHYT_RS17715 -3.7 -5.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS08960 -3.6 -1.9 threonine synthase compare
BPHYT_RS12845 -3.6 -13.7 ATPase compare
BPHYT_RS04965 -3.5 -7.4 ATP-binding protein compare
BPHYT_RS14845 -3.3 -2.2 cysteine synthase compare
BPHYT_RS04955 -3.3 -2.3 methionyl-tRNA synthetase compare
BPHYT_RS03640 -3.3 -2.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS14195 -3.3 -2.2 carbamoyl phosphate synthase small subunit compare
BPHYT_RS18320 -3.3 -6.6 orotate phosphoribosyltransferase compare
BPHYT_RS04740 -3.3 -6.6 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS14855 -3.2 -3.3 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS04720 -3.1 -5.5 transcriptional regulator compare
BPHYT_RS03725 -3.1 -1.6 serine hydroxymethyltransferase compare
BPHYT_RS17885 -3.1 -4.3 3-dehydroquinate synthase compare
BPHYT_RS01590 -3.1 -4.4 methionine biosynthesis protein MetW compare
BPHYT_RS02135 -3.0 -2.1 glyoxylate reductase compare
BPHYT_RS02590 -3.0 -5.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17680 -3.0 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS06350 -2.9 -2.6 chemotaxis protein CheY compare
BPHYT_RS14190 -2.9 -6.5 carbamoyl phosphate synthase large subunit compare
BPHYT_RS06900 -2.9 -3.2 aspartate aminotransferase compare
BPHYT_RS12465 -2.9 -3.0 inositol monophosphatase compare
BPHYT_RS04745 -2.8 -5.3 sulfate adenylyltransferase compare
BPHYT_RS08850 -2.8 -2.2 transcriptional regulator compare
BPHYT_RS02765 -2.8 -2.2 cytochrome BD oxidase subunit I compare
BPHYT_RS03535 -2.8 -4.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS14910 -2.6 -6.0 chorismate mutase compare
BPHYT_RS15640 -2.6 -11.2 L-aspartate oxidase compare
BPHYT_RS16905 -2.6 -3.8 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS31400 -2.6 -1.5 methyl-accepting chemotaxis protein compare
BPHYT_RS28065 -2.5 -1.8 hypothetical protein compare
BPHYT_RS15650 -2.5 -9.2 quinolinate synthetase compare
BPHYT_RS36600 -2.5 -2.0 lytic transglycosylase compare
BPHYT_RS12840 -2.5 -4.2 pyruvate dehydrogenase compare
BPHYT_RS32260 -2.5 -2.9 hypothetical protein compare
BPHYT_RS16255 -2.4 -1.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS06405 -2.4 -3.7 phosphoribosylamine--glycine ligase compare
BPHYT_RS05960 -2.4 -6.0 endoribonuclease L-PSP compare
BPHYT_RS29920 -2.4 -1.4 hypothetical protein compare
BPHYT_RS26775 -2.4 -1.3 chemotaxis protein CheB compare
BPHYT_RS15645 -2.4 -4.6 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS12900 -2.3 -1.7 transposase compare
BPHYT_RS31910 -2.3 -2.2 hypothetical protein compare
BPHYT_RS02570 -2.3 -3.5 phosphocarrier protein HPr compare
BPHYT_RS33920 -2.2 -5.7 type II citrate synthase compare
BPHYT_RS02905 -2.2 -13.3 RNA polymerase subunit sigma-54 compare
BPHYT_RS29520 -2.2 -1.1 hypothetical protein compare
BPHYT_RS06045 -2.2 -6.6 transaldolase compare
BPHYT_RS06600 -2.1 -1.7 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS05010 -2.1 -3.6 RpiR family transcriptional regulator compare
BPHYT_RS26680 -2.1 -3.9 oxidoreductase compare
BPHYT_RS07325 -2.1 -1.1 GntR family transcriptional regulator compare
BPHYT_RS18340 -2.1 -2.1 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS09315 -2.1 -1.1 chemotaxis protein CheY compare
BPHYT_RS16840 -2.0 -2.7 transketolase compare
BPHYT_RS10095 -2.0 -3.3 integrase compare
BPHYT_RS04290 -2.0 -2.0 glycosyl transferase family 2 compare
BPHYT_RS15670 -2.0 -5.5 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS21025 -2.0 -1.2 cation-binding protein compare
BPHYT_RS04730 -2.0 -2.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS05225 -1.9 -7.0 phosphoenolpyruvate carboxylase compare
BPHYT_RS02865 -1.9 -2.8 hypothetical protein compare
BPHYT_RS12985 -1.9 -1.3 amino acid acetyltransferase compare
BPHYT_RS34765 -1.8 -2.3 chemotaxis protein compare
BPHYT_RS03625 -1.8 -7.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS06375 -1.8 -2.9 ribonuclease compare
BPHYT_RS16345 -1.8 -3.2 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS04890 -1.8 -1.5 cobalamin biosynthesis protein CobD compare
BPHYT_RS10215 -1.8 -1.5 sulfate transporter compare
BPHYT_RS12615 -1.8 -1.8 dihydrodipicolinate synthase compare
BPHYT_RS32395 -1.8 -1.2 hypothetical protein compare
BPHYT_RS35885 -1.8 -2.3 hypothetical protein compare
BPHYT_RS06190 -1.7 -4.0 heptosyltransferase compare
BPHYT_RS23155 -1.7 -1.3 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS21215 -1.7 -4.1 Crp/Fnr family transcriptional regulator compare
BPHYT_RS36540 -1.7 -1.5 hypothetical protein compare
BPHYT_RS10470 -1.7 -2.4 hypothetical protein compare
BPHYT_RS28300 -1.6 -1.6 histone nucleoid-structuring protein H-NS compare
BPHYT_RS12935 -1.6 -5.2 chemotaxis protein CheY compare
BPHYT_RS11235 -1.6 -0.8 hypothetical protein compare
BPHYT_RS17380 -1.6 -6.7 ribulose-phosphate 3-epimerase compare
BPHYT_RS02610 -1.6 -2.1 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS27330 -1.6 -1.3 hypothetical protein compare
BPHYT_RS05705 -1.5 -0.8 hypothetical protein compare
BPHYT_RS36460 -1.5 -1.7 hypothetical protein compare
BPHYT_RS30890 -1.5 -1.1 hypothetical protein compare
BPHYT_RS04750 -1.5 -2.4 uroporphyrin-III C-methyltransferase compare
BPHYT_RS16880 -1.5 -1.4 malic enzyme compare
BPHYT_RS24500 -1.5 -1.2 histidine kinase compare
BPHYT_RS12150 -1.5 -8.1 PII uridylyl-transferase compare
BPHYT_RS12940 -1.5 -3.1 signal transduction histidine kinase compare
BPHYT_RS34295 -1.5 -0.8 fimbrial protein compare
BPHYT_RS17240 -1.4 -0.7 cell division protein FtsW compare
BPHYT_RS07540 -1.4 -0.8 hypothetical protein compare
BPHYT_RS05025 -1.4 -3.5 sugar ABC transporter substrate-binding protein compare
BPHYT_RS04015 -1.4 -1.4 glycosyl transferase compare
BPHYT_RS28830 -1.4 -0.9 LysR family transcriptional regulator compare
BPHYT_RS06685 -1.4 -0.9 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS23910 -1.4 -2.5 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS16250 -1.4 -1.1 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS05040 -1.3 -2.0 sugar ABC transporter ATPase compare
BPHYT_RS16290 -1.3 -0.8 hypothetical protein compare
BPHYT_RS14865 -1.3 -1.8 UDP-glucose 6-dehydrogenase compare
BPHYT_RS04385 -1.3 -1.6 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS18760 -1.3 -1.9 flagellar biosynthesis protein FliT compare
BPHYT_RS18655 -1.3 -2.0 3-oxoacyl-ACP synthase compare
BPHYT_RS13450 -1.3 -1.2 GntR family transcriptional regulator compare
BPHYT_RS36525 -1.3 -2.3 hypothetical protein compare
BPHYT_RS16665 -1.3 -2.0 peroxiredoxin compare
BPHYT_RS26490 -1.2 -0.9 hypothetical protein compare
BPHYT_RS03090 -1.2 -0.9 hypothetical protein compare
BPHYT_RS33615 -1.2 -1.7 decarboxylase compare
BPHYT_RS24820 -1.2 -3.3 cobyrinic acid a,c-diamide synthase compare
BPHYT_RS05020 -1.2 -3.4 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS24840 -1.2 -3.2 cobalamin biosynthesis protein CobW compare
BPHYT_RS23675 -1.2 -1.5 lysine transporter LysE compare
BPHYT_RS13835 -1.2 -1.0 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS36590 -1.2 -1.4 hypothetical protein compare
BPHYT_RS12990 -1.2 -1.0 iron transporter compare
BPHYT_RS36440 -1.2 -1.3 hypothetical protein compare
BPHYT_RS06530 -1.2 -0.9 membrane protein compare
BPHYT_RS28705 -1.2 -1.1 IclR family transcriptional regulator compare
BPHYT_RS04865 -1.2 -1.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
BPHYT_RS12265 -1.2 -1.1 alanine acetyltransferase compare
BPHYT_RS33870 -1.2 -2.7 DNA methylase N-4 compare
BPHYT_RS25250 -1.1 -1.9 porin compare
BPHYT_RS14505 -1.1 -1.3 membrane protein compare
BPHYT_RS15570 -1.1 -4.4 NAD-dependent dehydratase compare
BPHYT_RS08020 -1.1 -2.9 hypothetical protein compare
BPHYT_RS01625 -1.1 -1.4 chemotaxis protein CheY compare
BPHYT_RS27720 -1.1 -1.1 hypothetical protein compare
BPHYT_RS29950 -1.1 -1.6 hypothetical protein compare
BPHYT_RS26990 -1.1 -2.5 GntR family transcriptional regulator compare
BPHYT_RS34805 -1.1 -4.3 ABC transporter compare
BPHYT_RS10345 -1.1 -0.8 flagellar motor protein MotB compare
BPHYT_RS06470 -1.1 -1.1 membrane protein compare
BPHYT_RS04895 -1.1 -2.3 adenosylcobinamide kinase compare
BPHYT_RS21595 -1.1 -1.3 TetR family transcriptional regulator compare
BPHYT_RS06425 -1.1 -1.8 methylglyoxal synthase compare
BPHYT_RS30085 -1.1 -1.3 hypothetical protein compare
BPHYT_RS05235 -1.1 -1.0 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS09145 -1.1 -6.0 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS01485 -1.1 -0.6 histidine kinase compare
BPHYT_RS16265 -1.1 -2.3 hypothetical protein compare
BPHYT_RS17530 -1.0 -1.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS27370 -1.0 -1.3 CoA transferase compare
BPHYT_RS04010 -1.0 -0.8 glycosyl transferase compare
BPHYT_RS29020 -1.0 -2.0 hypothetical protein compare
BPHYT_RS34815 -1.0 -1.1 ABC transporter compare
BPHYT_RS16815 -1.0 -1.4 ureidoglycolate hydrolase compare
BPHYT_RS24850 -1.0 -4.3 magnesium chelatase compare
BPHYT_RS10465 -1.0 -3.1 hypothetical protein compare
BPHYT_RS26435 -1.0 -1.1 hypothetical protein compare
BPHYT_RS10475 -1.0 -1.2 mammalian cell entry protein compare
BPHYT_RS09620 -1.0 -1.4 aminodeoxychorismate lyase compare
BPHYT_RS17905 -1.0 -1.3 fimbrial assembly family protein compare
BPHYT_RS28905 -1.0 -1.3 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS04990 -1.0 -1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in supernatant control experiments