Experiment set14IT019 for Burkholderia phytofirmans PsJN

Compare to:

Vogels_fungal_media 0.1X

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17690 -7.2 -9.9 imidazole glycerol phosphate synthase compare
BPHYT_RS17670 -7.1 -4.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS08955 -6.7 -4.7 homoserine dehydrogenase compare
BPHYT_RS33900 -6.6 -9.2 3-isopropylmalate dehydrogenase compare
BPHYT_RS14915 -6.5 -7.8 phosphoserine aminotransferase compare
BPHYT_RS12530 -6.0 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS33835 -5.6 -6.7 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17675 -5.5 -2.1 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS16245 -5.1 -3.5 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS16735 -5.1 -7.0 phosphogluconate dehydratase compare
BPHYT_RS33915 -5.1 -4.9 isopropylmalate isomerase compare
BPHYT_RS03150 -5.0 -11.3 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS15920 -5.0 -11.4 argininosuccinate synthase compare
BPHYT_RS17890 -5.0 -2.3 shikimate kinase compare
BPHYT_RS06545 -4.9 -8.2 acetolactate synthase compare
BPHYT_RS33865 -4.9 -6.3 tryptophan synthase alpha chain compare
BPHYT_RS04720 -4.8 -6.5 transcriptional regulator compare
BPHYT_RS04290 -4.8 -2.6 glycosyl transferase family 2 compare
BPHYT_RS17715 -4.8 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS14895 -4.8 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS17405 -4.8 -1.3 indole-3-glycerol phosphate synthase compare
BPHYT_RS16835 -4.7 -6.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS33840 -4.6 -7.1 amidophosphoribosyltransferase compare
BPHYT_RS15915 -4.6 -9.5 ornithine carbamoyltransferase compare
BPHYT_RS16710 -4.6 -1.2 LysR family transcriptional regulator compare
BPHYT_RS33645 -4.5 -8.2 homoserine kinase compare
BPHYT_RS00770 -4.5 -1.2 conjugal transfer protein TraC compare
BPHYT_RS33920 -4.5 -8.1 type II citrate synthase compare
BPHYT_RS16175 -4.5 -2.7 hemolysin D compare
BPHYT_RS06555 -4.5 -6.2 ketol-acid reductoisomerase compare
BPHYT_RS15710 -4.5 -2.0 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS17855 -4.4 -13.1 glutamate synthase compare
BPHYT_RS32260 -4.3 -1.4 hypothetical protein compare
BPHYT_RS01595 -4.2 -7.4 homoserine O-acetyltransferase compare
BPHYT_RS04955 -4.2 -2.0 methionyl-tRNA synthetase compare
BPHYT_RS09500 -4.2 -5.5 glucose-6-phosphate isomerase compare
BPHYT_RS09515 -4.2 -4.0 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS14910 -4.1 -7.1 chorismate mutase compare
BPHYT_RS33880 -4.0 -5.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS03015 -4.0 -1.1 aldolase compare
BPHYT_RS04745 -4.0 -5.8 sulfate adenylyltransferase compare
BPHYT_RS33875 -3.9 -6.3 tryptophan synthase subunit alpha compare
BPHYT_RS33905 -3.8 -1.4 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS02865 -3.7 -4.8 hypothetical protein compare
BPHYT_RS13220 -3.7 -4.6 phosphomethylpyrimidine synthase compare
BPHYT_RS12845 -3.6 -12.5 ATPase compare
BPHYT_RS10100 -3.6 -4.6 dihydroxy-acid dehydratase compare
BPHYT_RS17390 -3.6 -10.6 anthranilate synthase subunit I compare
BPHYT_RS17685 -3.5 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS04965 -3.4 -6.7 ATP-binding protein compare
BPHYT_RS01590 -3.4 -3.7 methionine biosynthesis protein MetW compare
BPHYT_RS08130 -3.4 -1.9 transposase compare
BPHYT_RS04725 -3.4 -7.0 sulfite reductase compare
BPHYT_RS17680 -3.4 -2.0 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS03640 -3.3 -2.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS18705 -3.3 -2.1 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS12840 -3.3 -3.9 pyruvate dehydrogenase compare
BPHYT_RS17400 -3.3 -4.9 anthranilate phosphoribosyltransferase compare
BPHYT_RS14845 -3.3 -1.9 cysteine synthase compare
BPHYT_RS03725 -3.1 -1.4 serine hydroxymethyltransferase compare
BPHYT_RS15650 -3.1 -8.1 quinolinate synthetase compare
BPHYT_RS12615 -3.1 -1.9 dihydrodipicolinate synthase compare
BPHYT_RS03400 -3.1 -1.1 ATP-dependent DNA helicase RecG compare
BPHYT_RS03645 -3.0 -2.3 tRNA dimethylallyltransferase compare
BPHYT_RS04740 -3.0 -4.7 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS14855 -3.0 -3.0 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS36385 -3.0 -0.8 TetR family transcriptional regulator compare
BPHYT_RS17885 -3.0 -3.8 3-dehydroquinate synthase compare
BPHYT_RS06900 -3.0 -3.8 aspartate aminotransferase compare
BPHYT_RS04730 -2.9 -3.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS02590 -2.9 -6.7 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17520 -2.9 -3.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS16270 -2.9 -3.1 phosphoglycerate kinase compare
BPHYT_RS18320 -2.9 -6.5 orotate phosphoribosyltransferase compare
BPHYT_RS05960 -2.8 -5.9 endoribonuclease L-PSP compare
BPHYT_RS25870 -2.8 -1.0 type III secretion system ATPase compare
BPHYT_RS15075 -2.7 -1.7 dihydrokaempferol 4-reductase compare
BPHYT_RS17700 -2.7 -4.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS04285 -2.7 -2.2 rhamnosyltransferase compare
BPHYT_RS19610 -2.6 -1.4 general secretion pathway protein GspC compare
BPHYT_RS02570 -2.6 -6.9 phosphocarrier protein HPr compare
BPHYT_RS33370 -2.6 -1.4 LysR family transcriptional regulator compare
BPHYT_RS08960 -2.5 -1.4 threonine synthase compare
BPHYT_RS32150 -2.5 -1.9 hypothetical protein compare
BPHYT_RS04910 -2.5 -1.6 phenylacetic acid degradation protein compare
BPHYT_RS16255 -2.4 -1.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS15640 -2.4 -8.0 L-aspartate oxidase compare
BPHYT_RS28280 -2.4 -2.0 hypothetical protein compare
BPHYT_RS17395 -2.4 -1.8 anthranilate synthase subunit II compare
BPHYT_RS06045 -2.4 -5.6 transaldolase compare
BPHYT_RS25980 -2.3 -1.1 urea carboxylase compare
BPHYT_RS17095 -2.3 -2.0 proline--tRNA ligase compare
BPHYT_RS06610 -2.2 -1.3 triosephosphate isomerase compare
BPHYT_RS18910 -2.2 -1.7 FlgN compare
BPHYT_RS16840 -2.2 -3.0 transketolase compare
BPHYT_RS02905 -2.2 -11.2 RNA polymerase subunit sigma-54 compare
BPHYT_RS28575 -2.2 -1.0 transcriptional regulator compare
BPHYT_RS24955 -2.2 -2.3 cytochrome C peroxidase compare
BPHYT_RS00980 -2.1 -1.0 GCN5 family acetyltransferase compare
BPHYT_RS13705 -2.1 -1.9 chorismate synthase compare
BPHYT_RS10095 -2.1 -1.9 integrase compare
BPHYT_RS16905 -2.1 -2.7 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS06405 -2.1 -2.7 phosphoribosylamine--glycine ligase compare
BPHYT_RS02610 -2.1 -3.9 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS15670 -2.0 -3.3 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS34815 -2.0 -2.0 ABC transporter compare
BPHYT_RS35885 -2.0 -2.2 hypothetical protein compare
BPHYT_RS06350 -2.0 -2.2 chemotaxis protein CheY compare
BPHYT_RS03625 -2.0 -5.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS21905 -1.9 -0.9 IclR family transcriptional regulator compare
BPHYT_RS09545 -1.9 -1.5 peptide methionine sulfoxide reductase compare
BPHYT_RS21700 -1.9 -2.1 phosphotransacetylase compare
BPHYT_RS29815 -1.9 -2.1 UDP-N-acetyl-D-mannosamine transferase compare
BPHYT_RS12985 -1.9 -1.3 amino acid acetyltransferase compare
BPHYT_RS20790 -1.9 -1.6 TetR family transcriptional regulator compare
BPHYT_RS21995 -1.9 -4.2 (2Fe-2S)-binding protein compare
BPHYT_RS09465 -1.9 -1.3 transcriptional regulator compare
BPHYT_RS12935 -1.9 -5.0 chemotaxis protein CheY compare
BPHYT_RS21595 -1.8 -2.2 TetR family transcriptional regulator compare
BPHYT_RS14190 -1.8 -3.8 carbamoyl phosphate synthase large subunit compare
BPHYT_RS23650 -1.8 -0.8 hypothetical protein compare
BPHYT_RS02760 -1.8 -1.4 cytochrome BD oxidase subunit II compare
BPHYT_RS15645 -1.8 -3.4 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS10135 -1.8 -0.9 hypothetical protein compare
BPHYT_RS02365 -1.8 -0.9 hypothetical protein compare
BPHYT_RS20440 -1.7 -1.0 IclR family transcriptional regulator compare
BPHYT_RS05225 -1.7 -4.9 phosphoenolpyruvate carboxylase compare
BPHYT_RS06175 -1.7 -4.2 LPS biosynthesis compare
BPHYT_RS10435 -1.7 -1.9 ThiJ/PfpI domain-containing protein compare
BPHYT_RS10040 -1.7 -0.9 hypothetical protein compare
BPHYT_RS15325 -1.7 -1.8 ribonuclease PH compare
BPHYT_RS14920 -1.7 -1.7 hypothetical protein compare
BPHYT_RS06190 -1.7 -2.9 heptosyltransferase compare
BPHYT_RS08950 -1.7 -5.0 aminotransferase compare
BPHYT_RS05395 -1.7 -1.3 hypothetical protein compare
BPHYT_RS26670 -1.6 -2.5 Cobalt-precorrin-5B C(1)-methyltransferase compare
BPHYT_RS30450 -1.6 -0.9 ABC transporter permease compare
BPHYT_RS17530 -1.6 -2.6 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS25970 -1.6 -1.1 urea amidolyase compare
BPHYT_RS33580 -1.6 -3.8 geranyltranstransferase compare
BPHYT_RS35310 -1.6 -1.5 GCN5 family N-acetyltransferase compare
BPHYT_RS17380 -1.6 -3.8 ribulose-phosphate 3-epimerase compare
BPHYT_RS20630 -1.6 -1.5 patatin compare
BPHYT_RS02975 -1.6 -1.4 membrane protein compare
BPHYT_RS05020 -1.5 -3.6 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS12940 -1.5 -3.2 signal transduction histidine kinase compare
BPHYT_RS29165 -1.5 -3.1 hypothetical protein compare
BPHYT_RS04385 -1.5 -2.6 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS27370 -1.5 -1.6 CoA transferase compare
BPHYT_RS12150 -1.5 -7.4 PII uridylyl-transferase compare
BPHYT_RS24840 -1.5 -3.5 cobalamin biosynthesis protein CobW compare
BPHYT_RS06530 -1.5 -1.6 membrane protein compare
BPHYT_RS15570 -1.5 -3.8 NAD-dependent dehydratase compare
BPHYT_RS07690 -1.5 -1.9 AraC family transcriptional regulator compare
BPHYT_RS17100 -1.5 -3.5 RNA pyrophosphohydrolase compare
BPHYT_RS18965 -1.5 -1.0 chemotaxis protein CheY compare
BPHYT_RS30140 -1.5 -1.3 3-methylitaconate isomerase compare
BPHYT_RS03495 -1.5 -4.7 hypothetical protein compare
BPHYT_RS12280 -1.5 -1.0 RNA helicase compare
BPHYT_RS08000 -1.5 -1.5 antibiotic biosynthesis monooxygenase compare
BPHYT_RS14185 -1.5 -1.4 transcription elongation factor GreA compare
BPHYT_RS08685 -1.5 -2.7 hypothetical protein compare
BPHYT_RS18655 -1.4 -3.7 3-oxoacyl-ACP synthase compare
BPHYT_RS05650 -1.4 -1.0 hypothetical protein compare
BPHYT_RS01425 -1.4 -2.1 3-phosphoglycerate dehydrogenase compare
BPHYT_RS10540 -1.4 -1.4 secretion protein compare
BPHYT_RS27720 -1.4 -1.1 hypothetical protein compare
BPHYT_RS30010 -1.4 -1.3 cell division protein compare
BPHYT_RS33460 -1.4 -0.7 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS26355 -1.4 -1.2 hypothetical protein compare
BPHYT_RS14400 -1.4 -2.1 anti-sigma factor compare
BPHYT_RS11475 -1.4 -3.8 2-nitropropane dioxygenase compare
BPHYT_RS26680 -1.3 -2.3 oxidoreductase compare
BPHYT_RS02395 -1.3 -1.7 ABC transporter compare
BPHYT_RS14755 -1.3 -1.2 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS23250 -1.3 -1.3 hypothetical protein compare
BPHYT_RS27980 -1.3 -3.0 ABC transporter substrate-binding protein compare
BPHYT_RS24105 -1.3 -1.6 chloroperoxidase compare
BPHYT_RS30465 -1.3 -0.7 short-chain dehydrogenase compare
BPHYT_RS10475 -1.3 -1.3 mammalian cell entry protein compare
BPHYT_RS36035 -1.3 -0.7 hypothetical protein compare
BPHYT_RS08150 -1.3 -0.7 membrane protein compare
BPHYT_RS21025 -1.3 -0.8 cation-binding protein compare
BPHYT_RS20270 -1.3 -2.0 L-ornithine 5-monooxygenase compare
BPHYT_RS03535 -1.3 -2.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS30485 -1.3 -0.9 ABC transporter ATP-binding protein compare
BPHYT_RS26695 -1.3 -2.1 cobalamin biosynthesis protein CbiG compare
BPHYT_RS04875 -1.3 -2.1 alpha-ribazole phosphatase compare
BPHYT_RS30750 -1.2 -1.2 GntR family transcriptional regulator compare
BPHYT_RS34545 -1.2 -1.4 transcriptional regulator compare
BPHYT_RS04895 -1.2 -2.5 adenosylcobinamide kinase compare
BPHYT_RS26300 -1.2 -1.0 ATP-dependent DNA ligase compare
BPHYT_RS00205 -1.2 -3.2 DeoR family transcriptional regulator compare
BPHYT_RS02435 -1.2 -0.9 hypothetical protein compare
BPHYT_RS13200 -1.2 -1.3 molybdopterin binding oxidoreductase compare
BPHYT_RS30995 -1.2 -0.7 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS13745 -1.2 -3.1 membrane protein compare
BPHYT_RS04870 -1.2 -3.8 cobalamin synthase compare
BPHYT_RS09650 -1.2 -1.6 hypothetical protein compare
BPHYT_RS07140 -1.2 -1.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in supernatant control experiments