Experiment set14IT018 for Burkholderia phytofirmans PsJN

Compare to:

Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
BPHYT_RS30750 -5.1 -2.3 GntR family transcriptional regulator compare
BPHYT_RS16270 -4.7 -3.3 phosphoglycerate kinase compare
BPHYT_RS12985 -4.6 -2.4 amino acid acetyltransferase compare
BPHYT_RS15710 -4.5 -2.1 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS03480 -4.1 -5.8 ferritin compare
BPHYT_RS23650 -4.1 -1.1 hypothetical protein compare
BPHYT_RS17520 -3.5 -4.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS16835 -3.4 -4.4 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS02650 -3.3 -1.2 membrane protein compare
BPHYT_RS03725 -3.1 -1.4 serine hydroxymethyltransferase compare
BPHYT_RS14855 -3.1 -3.1 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS09515 -2.9 -2.7 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS32260 -2.9 -2.3 hypothetical protein compare
BPHYT_RS33805 -2.8 -1.1 hypothetical protein compare
BPHYT_RS27330 -2.7 -1.3 hypothetical protein compare
BPHYT_RS14190 -2.6 -6.4 carbamoyl phosphate synthase large subunit compare
BPHYT_RS18320 -2.6 -4.9 orotate phosphoribosyltransferase compare
BPHYT_RS12465 -2.5 -2.7 inositol monophosphatase compare
BPHYT_RS01455 -2.4 -1.3 peptide deformylase compare
BPHYT_RS14550 -2.4 -0.9 tRNA-Asn compare
BPHYT_RS16245 -2.4 -3.1 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS30450 -2.4 -1.1 ABC transporter permease compare
BPHYT_RS33920 -2.3 -6.3 type II citrate synthase compare
BPHYT_RS04920 -2.3 -2.2 aspartate 1-decarboxylase compare
BPHYT_RS11685 -2.3 -1.1 phasin family protein compare
BPHYT_RS05705 -2.3 -0.8 hypothetical protein compare
BPHYT_RS18655 -2.2 -2.8 3-oxoacyl-ACP synthase compare
BPHYT_RS06405 -2.1 -2.7 phosphoribosylamine--glycine ligase compare
BPHYT_RS34665 -2.1 -1.5 hypothetical protein compare
BPHYT_RS02570 -2.1 -5.1 phosphocarrier protein HPr compare
BPHYT_RS12845 -2.1 -11.1 ATPase compare
BPHYT_RS13605 -2.1 -0.8 tRNA-Pro compare
BPHYT_RS29085 -2.1 -1.3 LysR family transcriptional regulator compare
BPHYT_RS27030 -2.0 -1.3 transcriptional regulator compare
BPHYT_RS33840 -2.0 -5.4 amidophosphoribosyltransferase compare
BPHYT_RS15415 -2.0 -7.4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS25500 -2.0 -1.5 hypothetical protein compare
BPHYT_RS03640 -2.0 -2.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS16905 -2.0 -3.2 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS00690 -2.0 -1.2 transcriptional regulator compare
BPHYT_RS02590 -2.0 -4.7 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS16255 -2.0 -3.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS04955 -2.0 -1.8 methionyl-tRNA synthetase compare
BPHYT_RS33030 -1.9 -0.9 hypothetical protein compare
BPHYT_RS32525 -1.9 -1.4 hypothetical protein compare
BPHYT_RS08960 -1.9 -1.4 threonine synthase compare
BPHYT_RS26570 -1.9 -0.7 5'-nucleotidase compare
BPHYT_RS13645 -1.9 -10.5 threonine--tRNA ligase compare
BPHYT_RS05620 -1.9 -1.2 CsbD family protein compare
BPHYT_RS14135 -1.8 -1.7 phosphate transporter permease subunit PtsA compare
BPHYT_RS17690 -1.8 -7.1 imidazole glycerol phosphate synthase compare
BPHYT_RS11040 -1.7 -1.0 GntR family transcriptional regulator compare
BPHYT_RS11310 -1.7 -1.2 LysR family transcriptional regulator compare
BPHYT_RS33610 -1.7 -1.1 DNA polymerase I compare
BPHYT_RS11810 -1.7 -1.0 LysR family transcriptional regulator compare
BPHYT_RS06685 -1.7 -1.5 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS12265 -1.7 -1.2 alanine acetyltransferase compare
BPHYT_RS18910 -1.7 -1.7 FlgN compare
BPHYT_RS12510 -1.6 -2.0 RNA-binding protein compare
BPHYT_RS19610 -1.6 -1.6 general secretion pathway protein GspC compare
BPHYT_RS12840 -1.6 -3.4 pyruvate dehydrogenase compare
BPHYT_RS14845 -1.6 -1.3 cysteine synthase compare
BPHYT_RS05610 -1.6 -7.1 DNA-cytosine methyltransferase compare
BPHYT_RS14060 -1.6 -0.9 peptidase M23 compare
BPHYT_RS02880 -1.6 -1.1 ATP-dependent protease compare
BPHYT_RS02100 -1.6 -1.2 AsnC family transcriptional regulator compare
BPHYT_RS12855 -1.6 -1.6 hypothetical protein compare
BPHYT_RS10005 -1.6 -1.2 hypothetical protein compare
BPHYT_RS03830 -1.6 -2.1 hypothetical protein compare
BPHYT_RS29185 -1.5 -1.5 sugar ABC transporter permease compare
BPHYT_RS21595 -1.5 -2.5 TetR family transcriptional regulator compare
BPHYT_RS16735 -1.5 -3.6 phosphogluconate dehydratase compare
BPHYT_RS17035 -1.5 -2.3 sugar kinase compare
BPHYT_RS13200 -1.5 -1.5 molybdopterin binding oxidoreductase compare
BPHYT_RS14865 -1.5 -2.0 UDP-glucose 6-dehydrogenase compare
BPHYT_RS14450 -1.5 -2.8 hypothetical protein compare
BPHYT_RS16815 -1.5 -1.6 ureidoglycolate hydrolase compare
BPHYT_RS17530 -1.5 -2.2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS08130 -1.5 -1.1 transposase compare
BPHYT_RS14245 -1.5 -0.9 membrane protein compare
BPHYT_RS07475 -1.4 -1.3 nitrate reductase compare
BPHYT_RS04385 -1.4 -3.1 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS34815 -1.4 -2.3 ABC transporter compare
BPHYT_RS12160 -1.4 -2.2 peptide deformylase compare
BPHYT_RS12550 -1.4 -0.7 GTP-binding protein HflX compare
BPHYT_RS03400 -1.4 -1.0 ATP-dependent DNA helicase RecG compare
BPHYT_RS11425 -1.4 -1.6 chemotaxis protein compare
BPHYT_RS23605 -1.4 -1.8 hypothetical protein compare
BPHYT_RS00955 -1.4 -1.9 DNA polymerase compare
BPHYT_RS30995 -1.4 -0.8 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS17445 -1.4 -2.9 GTP-binding protein YchF compare
BPHYT_RS04885 -1.4 -2.2 threonine-phosphate decarboxylase compare
BPHYT_RS29920 -1.4 -0.9 hypothetical protein compare
BPHYT_RS02575 -1.4 -6.3 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS22360 -1.4 -1.8 response regulator receiver compare
BPHYT_RS12725 -1.4 -6.7 regulator compare
BPHYT_RS16840 -1.4 -1.8 transketolase compare
BPHYT_RS21650 -1.4 -1.6 cobalamin synthesis protein P47K compare
BPHYT_RS30845 -1.4 -1.6 polyketide cyclase compare
BPHYT_RS15305 -1.3 -5.6 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS20940 -1.3 -1.8 citrate synthase compare
BPHYT_RS09650 -1.3 -1.6 hypothetical protein compare
BPHYT_RS14485 -1.3 -2.4 ribonuclease E compare
BPHYT_RS18255 -1.3 -1.2 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS36400 -1.3 -0.7 hypothetical protein compare
BPHYT_RS14175 -1.3 -5.9 RNA-binding protein compare
BPHYT_RS20595 -1.3 -1.9 hypothetical protein compare
BPHYT_RS31385 -1.3 -1.9 ketoacyl reductase compare
BPHYT_RS10345 -1.3 -0.7 flagellar motor protein MotB compare
BPHYT_RS17685 -1.3 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS36570 -1.3 -1.2 histone compare
BPHYT_RS14210 -1.3 -2.6 hydroxyacylglutathione hydrolase compare
BPHYT_RS06900 -1.3 -2.5 aspartate aminotransferase compare
BPHYT_RS10475 -1.3 -1.2 mammalian cell entry protein compare
BPHYT_RS06285 -1.2 -2.9 diguanylate cyclase compare
BPHYT_RS01120 -1.2 -2.8 plasmid partitioning protein ParB compare
BPHYT_RS12900 -1.2 -0.9 transposase compare
BPHYT_RS12485 -1.2 -2.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS14735 -1.2 -0.9 hypothetical protein compare
BPHYT_RS28860 -1.2 -0.7 haloacid dehalogenase compare
BPHYT_RS15670 -1.2 -2.6 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS12590 -1.2 -1.1 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS00115 -1.2 -1.3 acetaldehyde dehydrogenase compare
BPHYT_RS07410 -1.2 -2.4 glucosamine--fructose-6-phosphate aminotransferase compare
BPHYT_RS08615 -1.2 -1.0 hypothetical protein compare
BPHYT_RS23830 -1.2 -1.3 acetyl-CoA hydrolase compare
BPHYT_RS27390 -1.2 -1.9 hydroxyacid dehydrogenase compare
BPHYT_RS26915 -1.2 -3.0 Fis family transcriptional regulator compare
BPHYT_RS08525 -1.2 -0.8 SAM-dependent methyltransferase compare
BPHYT_RS11125 -1.2 -0.8 alkylhydroperoxidase compare
BPHYT_RS08125 -1.2 -5.0 ATPase compare
BPHYT_RS26775 -1.2 -0.8 chemotaxis protein CheB compare
BPHYT_RS36480 -1.2 -1.5 hypothetical protein compare
BPHYT_RS33655 -1.2 -2.8 MarR family transcriptional regulator compare
BPHYT_RS03215 -1.2 -1.7 TetR family transcriptional regulator compare
BPHYT_RS09445 -1.2 -2.8 trigger factor compare
BPHYT_RS26465 -1.2 -0.7 metallophosphoesterase compare
BPHYT_RS22815 -1.2 -0.9 TonB-denpendent receptor compare
BPHYT_RS10115 -1.2 -1.6 hypothetical protein compare
BPHYT_RS27455 -1.2 -1.0 rod shape-determining protein MreB compare
BPHYT_RS07850 -1.2 -2.1 catechol 1,2-dioxygenase compare
BPHYT_RS10650 -1.2 -0.8 membrane protein compare
BPHYT_RS14505 -1.2 -1.4 membrane protein compare
BPHYT_RS17050 -1.2 -1.6 hypothetical protein compare
BPHYT_RS04255 -1.2 -1.6 diadenosine tetraphosphatase compare
BPHYT_RS26855 -1.1 -1.6 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS17670 -1.1 -3.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS03475 -1.1 -4.0 catalase compare
BPHYT_RS20425 -1.1 -2.3 hypothetical protein compare
BPHYT_RS36130 -1.1 -0.8 hypothetical protein compare
BPHYT_RS02710 -1.1 -0.6 hypothetical protein compare
BPHYT_RS04720 -1.1 -3.4 transcriptional regulator compare
BPHYT_RS31430 -1.1 -2.8 FAD-dependent oxidoreductase compare
BPHYT_RS36545 -1.1 -2.0 Resolvase helix-turn-helix domain-containing protein compare
BPHYT_RS24170 -1.1 -1.6 gluconolactonase compare
BPHYT_RS27920 -1.1 -0.9 tricarballylate utilization protein B compare
BPHYT_RS01245 -1.1 -4.3 hypothetical protein compare
BPHYT_RS12325 -1.1 -2.6 GNAT family acetyltransferase compare
BPHYT_RS13080 -1.1 -1.0 hypothetical protein compare
BPHYT_RS31060 -1.1 -0.8 capsular polysaccharide biosynthesis protein compare
BPHYT_RS07080 -1.1 -1.3 glutathione S-transferase compare
BPHYT_RS31290 -1.1 -1.3 histidine kinase compare
BPHYT_RS28025 -1.1 -0.7 3-hydroxyisobutyrate dehydrogenase compare
BPHYT_RS06985 -1.1 -2.9 fumarate hydratase compare
BPHYT_RS07335 -1.1 -1.8 nitrate ABC transporter permease compare
BPHYT_RS30505 -1.1 -1.3 ABC transporter permease compare
BPHYT_RS31205 -1.1 -1.2 peptide ABC transporter ATP-binding protein compare
BPHYT_RS16265 -1.1 -1.6 hypothetical protein compare
BPHYT_RS08945 -1.1 -5.2 hypothetical protein compare
BPHYT_RS04965 -1.1 -3.0 ATP-binding protein compare
BPHYT_RS16430 -1.1 -6.5 cytochrome C compare
BPHYT_RS19435 -1.1 -1.1 16S rRNA methyltransferase compare
BPHYT_RS28705 -1.0 -0.9 IclR family transcriptional regulator compare
BPHYT_RS34635 -1.0 -2.3 50S ribosomal protein L21 compare
BPHYT_RS26840 -1.0 -2.1 NADH dehydrogenase compare
BPHYT_RS29245 -1.0 -1.3 peptidase M23 compare
BPHYT_RS03015 -1.0 -0.5 aldolase compare
BPHYT_RS28485 -1.0 -0.8 GntR family transcriptional regulator compare
BPHYT_RS16710 -1.0 -0.7 LysR family transcriptional regulator compare
BPHYT_RS33580 -1.0 -3.6 geranyltranstransferase compare
BPHYT_RS05020 -1.0 -2.4 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS17700 -1.0 -2.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS12290 -1.0 -1.6 universal stress protein UspA compare
BPHYT_RS10395 -1.0 -1.5 sulfonate ABC transporter compare
BPHYT_RS35720 -1.0 -3.1 phosphopantetheinyl transferase compare
BPHYT_RS14665 -1.0 -2.1 hypothetical protein compare
BPHYT_RS06555 -1.0 -3.0 ketol-acid reductoisomerase compare
BPHYT_RS20355 -1.0 -1.3 ABC transporter substrate-binding protein compare
BPHYT_RS35165 -1.0 -1.7 peptidase compare
BPHYT_RS30395 -1.0 -1.3 small mechanosensitive ion channel protein MscS compare
BPHYT_RS16435 -1.0 -5.6 alcohol dehydrogenase compare
BPHYT_RS21585 -1.0 -1.5 short-chain dehydrogenase compare
BPHYT_RS25070 -1.0 -0.8 choline ABC transporter permease compare
BPHYT_RS11455 -1.0 -1.7 manganese transporter compare
BPHYT_RS09525 -1.0 -1.2 toxin HipA compare
BPHYT_RS07570 -1.0 -0.6 hypothetical protein compare
BPHYT_RS35635 -1.0 -2.4 nucleoside 2-deoxyribosyltransferase compare
BPHYT_RS26895 -1.0 -2.2 nicotinate phosphoribosyltransferase compare
BPHYT_RS02540 -1.0 -1.0 hypothetical protein compare
BPHYT_RS08965 -1.0 -1.8 molybdenum cofactor biosynthesis protein MoaA compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in supernatant control experiments

For supernatant control Vogels_fungal_media across organisms