Experiment set14IT013 for Pseudomonas fluorescens SBW25-INTG

Compare to:

p-Coumaric acid (C) and Ammonium chloride (N); with TAPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS28695 -5.8 -5.7 phosphoglycerate dehydrogenase compare
PFLU_RS02490 -5.1 -10.4 phosphoserine phosphatase SerB compare
PFLU_RS06730 -5.1 -9.8 CoA-transferase subunit beta compare
PFLU_RS27365 -5.0 -8.3 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS06765 -4.9 -6.7 4-carboxymuconolactone decarboxylase compare
PFLU_RS28535 -4.9 -11.4 dihydroxy-acid dehydratase compare
PFLU_RS20575 -4.9 -4.8 3-isopropylmalate dehydratase small subunit compare
PFLU_RS25640 -4.9 -5.8 ketol-acid reductoisomerase compare
PFLU_RS16075 -4.8 -4.7 aldehyde dehydrogenase compare
PFLU_RS20580 -4.7 -7.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS28390 -4.6 -10.3 methionine biosynthesis protein MetW compare
PFLU_RS21360 -4.6 -3.1 MarR family transcriptional regulator compare
PFLU_RS20540 -4.6 -5.4 phosphoribosylanthranilate isomerase compare
PFLU_RS20565 -4.5 -10.1 3-isopropylmalate dehydrogenase compare
PFLU_RS16080 -4.5 -8.0 p-hydroxycinnamoyl CoA hydratase/lyase compare
PFLU_RS24765 -4.4 -19.7 2-isopropylmalate synthase compare
PFLU_RS28385 -4.4 -14.0 homoserine O-acetyltransferase compare
PFLU_RS07650 -4.4 -12.3 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS06725 -4.4 -8.8 CoA transferase subunit A compare
PFLU_RS01620 -4.3 -3.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS27370 -4.3 -12.4 anthranilate phosphoribosyltransferase compare
PFLU_RS06735 -4.3 -6.5 3-oxoadipyl-CoA thiolase compare
PFLU_RS06755 -4.3 -9.1 3-carboxy-cis,cis-muconate cycloisomerase compare
PFLU_RS07435 -4.2 -12.4 4-hydroxybenzoate 3-monooxygenase compare
PFLU_RS00180 -4.2 -5.0 tryptophan synthase subunit beta compare
PFLU_RS06745 -4.2 -5.0 protocatechuate 3,4-dioxygenase subunit alpha compare
PFLU_RS28645 -4.2 -18.2 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS28165 -4.2 -10.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS01605 -4.1 -7.3 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS16070 -4.0 -9.0 feruloyl-CoA synthase compare
PFLU_RS25815 -4.0 -3.3 transcription termination/antitermination protein NusA compare
PFLU_RS29880 -3.9 -17.0 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS07430 -3.9 -12.7 helix-turn-helix domain-containing protein compare
PFLU_RS04465 -3.9 -11.6 ATP phosphoribosyltransferase compare
PFLU_RS00175 -3.9 -6.4 tryptophan synthase subunit alpha compare
PFLU_RS04470 -3.8 -10.8 histidinol dehydrogenase compare
PFLU_RS25360 -3.8 -7.3 glutamate 5-kinase compare
PFLU_RS01610 -3.8 -8.5 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS06715 -3.8 -10.8 IclR family transcriptional regulator compare
PFLU_RS20510 -3.8 -15.0 O-succinylhomoserine sulfhydrylase compare
PFLU_RS06760 -3.7 -12.6 3-oxoadipate enol-lactonase compare
PFLU_RS29515 -3.7 -13.0 RidA family protein compare
PFLU_RS06740 -3.7 -10.3 protocatechuate 3,4-dioxygenase subunit beta compare
PFLU_RS28655 -3.7 -10.9 HAD family hydrolase compare
PFLU_RS12975 -3.7 -3.6 DUF934 domain-containing protein compare
PFLU_RS04930 -3.7 -13.8 PhoH family protein compare
PFLU_RS01900 -3.6 -7.8 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS25645 -3.6 -3.5 acetolactate synthase small subunit compare
PFLU_RS02590 -3.6 -10.4 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS24025 -3.6 -13.0 quinolinate synthase NadA compare
PFLU_RS29885 -3.6 -14.0 LysR family transcriptional regulator compare
PFLU_RS06055 -3.5 -2.1 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS22095 -3.5 -11.6 GTP diphosphokinase compare
PFLU_RS03970 -3.4 -11.6 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS20515 -3.4 -3.3 amidophosphoribosyltransferase compare
PFLU_RS12980 -3.2 -6.8 nitrite/sulfite reductase compare
PFLU_RS29875 -3.2 -17.6 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS00435 -3.2 -18.5 PAS domain-containing protein compare
PFLU_RS13085 -3.1 -4.2 DUF1315 family protein compare
PFLU_RS01625 -3.1 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS22105 -3.1 -6.5 cysteine synthase CysM compare
PFLU_RS00415 -3.0 -2.1 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS07655 -3.0 -7.6 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS21965 -3.0 -16.6 transporter compare
PFLU_RS27620 -3.0 -18.0 acyl-CoA dehydrogenase compare
PFLU_RS23310 -2.9 -9.7 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS23305 -2.9 -11.8 arginine N-succinyltransferase compare
PFLU_RS25715 -2.9 -7.2 RNA polymerase-binding protein DksA compare
PFLU_RS08410 -2.9 -8.8 HTH-type transcriptional regulator CysB compare
PFLU_RS18505 -2.9 -6.8 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS09055 -2.8 -1.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS29340 -2.7 -10.7 bifunctional diguanylate cyclase/phosphodiesterase compare
PFLU_RS01895 -2.7 -7.1 phosphoribosyl-ATP diphosphatase compare
PFLU_RS07665 -2.6 -2.5 type I DNA topoisomerase compare
PFLU_RS01005 -2.6 -2.0 ABC transporter ATP-binding protein compare
PFLU_RS28315 -2.6 -1.5 response regulator compare
PFLU_RS29095 -2.6 -19.2 polyphosphate kinase 1 compare
PFLU_RS08505 -2.6 -8.8 protease HtpX compare
PFLU_RS22630 -2.5 -16.6 phosphoenolpyruvate synthase compare
PFLU_RS25750 -2.5 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS19170 -2.5 -2.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS30160 -2.5 -2.4 ParB/RepB/Spo0J family partition protein compare
PFLU_RS01995 -2.5 -12.5 malate dehydrogenase compare
PFLU_RS27645 -2.5 -8.3 8-amino-7-oxononanoate synthase compare
PFLU_RS08165 -2.3 -2.2 acyl carrier protein compare
PFLU_RS08675 -2.3 -1.6 DsbE family thiol:disulfide interchange protein compare
PFLU_RS18530 -2.3 -2.7 DNA translocase FtsK compare
PFLU_RS25735 -2.3 -2.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS28965 -2.3 -10.3 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS01960 -2.3 -2.2 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS20660 -2.3 -10.7 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS08650 -2.3 -2.2 heme exporter protein CcmB compare
PFLU_RS27635 -2.3 -5.4 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS22740 -2.2 -3.0 phosphoadenylyl-sulfate reductase compare
PFLU_RS25730 -2.2 -11.2 PAS domain S-box protein compare
PFLU_RS27650 -2.1 -8.4 biotin synthase BioB compare
PFLU_RS22520 -2.1 -3.1 GntR family transcriptional regulator compare
PFLU_RS28195 -2.1 -8.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS27630 -2.0 -3.4 dethiobiotin synthase compare
PFLU_RS22070 -2.0 -2.7 phosphoribosylglycinamide formyltransferase compare
PFLU_RS07225 -2.0 -12.5 L-aspartate oxidase compare
PFLU_RS24160 -2.0 -4.9 HAMP domain-containing protein compare
PFLU_RS30030 -2.0 -1.4 membrane protein compare
PFLU_RS29760 -2.0 -11.2 phosphate ABC transporter permease PstA compare
PFLU_RS29750 -1.9 -5.7 phosphate signaling complex protein PhoU compare
PFLU_RS13540 -1.9 -1.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS30165 -1.9 -8.2 ParA family protein compare
PFLU_RS02365 -1.9 -9.7 glycosyltransferase compare
PFLU_RS01315 -1.9 -3.2 Hsp33 family molecular chaperone HslO compare
PFLU_RS29550 -1.9 -4.1 ATP-dependent DNA helicase RecG compare
PFLU_RS23920 -1.8 -2.7 septation protein A compare
PFLU_RS29490 -1.8 -7.9 ribonuclease PH compare
PFLU_RS02455 -1.8 -2.7 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS25740 -1.8 -5.4 polynucleotide adenylyltransferase PcnB compare
PFLU_RS22010 -1.8 -6.4 threonine-phosphate decarboxylase compare
PFLU_RS06750 -1.8 -10.1 MFS transporter compare
PFLU_RS21300 -1.8 -4.5 cysteine hydrolase compare
PFLU_RS27380 -1.7 -8.9 anthranilate synthase component I compare
PFLU_RS00245 -1.6 -6.9 YheV family putative metal-binding protein compare
PFLU_RS21740 -1.6 -5.6 Hpt domain-containing protein compare
PFLU_RS04220 -1.6 -7.4 FadR family transcriptional regulator compare
PFLU_RS30630 -1.6 -1.8 hypothetical protein compare
PFLU_RS15310 -1.6 -2.6 YgdI/YgdR family lipoprotein compare
PFLU_RS21600 -1.6 -3.6 response regulator transcription factor compare
PFLU_RS18585 -1.6 -1.6 high frequency lysogenization protein HflD compare
PFLU_RS27640 -1.5 -1.7 alpha/beta fold hydrolase compare
PFLU_RS21780 -1.5 -4.1 flagellar hook-basal body complex protein FliE compare
PFLU_RS23240 -1.5 -6.8 magnesium transporter compare
PFLU_RS07970 -1.5 -9.3 LOG family protein compare
PFLU_RS08655 -1.5 -2.4 heme ABC transporter permease compare
PFLU_RS15610 -1.5 -4.5 helix-turn-helix transcriptional regulator compare
PFLU_RS02565 -1.5 -3.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS21240 -1.5 -2.1 hypothetical protein compare
PFLU_RS04165 -1.5 -3.6 cell division protein ZapE compare
PFLU_RS13015 -1.5 -4.6 precorrin-4 C(11)-methyltransferase compare
PFLU_RS04715 -1.5 -5.5 D-alanine--D-alanine ligase compare
PFLU_RS03645 -1.5 -8.0 tetratricopeptide repeat protein compare
PFLU_RS13885 -1.5 -2.3 hypothetical protein compare
PFLU_RS04475 -1.4 -7.5 histidinol-phosphate transaminase compare
PFLU_RS24125 -1.4 -3.0 cold-shock protein compare
PFLU_RS03770 -1.4 -8.5 sulfate adenylyltransferase subunit CysN compare
PFLU_RS01965 -1.4 -1.6 ATP-dependent protease subunit HslV compare
PFLU_RS01645 -1.4 -7.6 S41 family peptidase compare
PFLU_RS08670 -1.4 -3.6 heme lyase CcmF/NrfE family subunit compare
PFLU_RS21645 -1.4 -5.6 chemotaxis protein CheA compare
PFLU_RS23235 -1.3 -2.6 Arc family DNA-binding protein compare
PFLU_RS08760 -1.3 -2.0 phosphonate C-P lyase system protein PhnG compare
PFLU_RS27375 -1.3 -3.7 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS12450 -1.3 -7.7 cyclic peptide export ABC transporter compare
PFLU_RS20405 -1.3 -4.4 carbon storage regulator CsrA compare
PFLU_RS00065 -1.3 -6.6 lysophospholipid acyltransferase compare
PFLU_RS25800 -1.3 -2.3 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS17455 -1.3 -5.5 saccharopine dehydrogenase family protein compare
PFLU_RS02625 -1.3 -8.3 ribonuclease R compare
PFLU_RS06570 -1.3 -3.5 glycine zipper 2TM domain-containing protein compare
PFLU_RS03765 -1.3 -7.2 sulfate adenylyltransferase subunit CysD compare
PFLU_RS29295 -1.3 -4.0 YjbQ family protein compare
PFLU_RS21595 -1.3 -4.5 sensor histidine kinase compare
PFLU_RS23730 -1.3 -7.8 MurR/RpiR family transcriptional regulator compare
PFLU_RS21800 -1.3 -5.3 flagellar assembly protein FliT compare
PFLU_RS13665 -1.3 -1.1 MarR family transcriptional regulator compare
PFLU_RS31440 -1.3 -1.6 hypothetical protein compare
PFLU_RS11980 -1.3 -4.9 precorrin-6A synthase (deacetylating) compare
PFLU_RS19175 -1.2 -5.5 trigger factor compare
PFLU_RS01485 -1.2 -8.1 cellulase compare
PFLU_RS26640 -1.2 -7.1 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS26400 -1.2 -2.6 HAD family hydrolase compare
PFLU_RS18005 -1.2 -2.9 acyl-CoA/acyl-ACP dehydrogenase compare
PFLU_RS28305 -1.2 -4.6 purine-binding chemotaxis protein CheW compare
PFLU_RS22005 -1.2 -6.5 cobyric acid synthase compare
PFLU_RS17450 -1.2 -4.7 carboxynorspermidine decarboxylase compare
PFLU_RS15795 -1.2 -1.6 hypothetical protein compare
PFLU_RS22015 -1.2 -6.0 cobalamin biosynthesis protein compare
PFLU_RS02980 -1.2 -1.2 precorrin-8X methylmutase compare
PFLU_RS27340 -1.2 -6.6 histidine triad nucleotide-binding protein compare
PFLU_RS23185 -1.2 -7.3 protein-glutamate O-methyltransferase CheR compare
PFLU_RS29780 -1.2 -4.6 acyl-CoA thioesterase compare
PFLU_RS29735 -1.2 -5.9 HlyC/CorC family transporter compare
PFLU_RS18550 -1.2 -6.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFLU_RS08370 -1.2 -2.9 hypothetical protein compare
PFLU_RS08535 -1.2 -6.9 response regulator compare
PFLU_RS01955 -1.1 -5.3 DUF971 domain-containing protein compare
PFLU_RS15410 -1.1 -1.7 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS04070 -1.1 -1.1 peptide chain release factor 3 compare
PFLU_RS30345 -1.1 -1.8 DUF2559 family protein compare
PFLU_RS13000 -1.1 -7.7 methionine synthase compare
PFLU_RS30610 -1.1 -2.5 IS3 family transposase compare
PFLU_RS24085 -1.1 -0.8 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS02990 -1.1 -3.7 precorrin-3B C(17)-methyltransferase compare
PFLU_RS31780 -1.1 -1.5 hypothetical protein compare
PFLU_RS18615 -1.1 -1.4 NADH-quinone oxidoreductase subunit A compare
PFLU_RS27910 -1.1 -1.5 helix-turn-helix transcriptional regulator compare
PFLU_RS31630 -1.1 -1.9 hypothetical protein compare
PFLU_RS30790 -1.1 -2.1 hypothetical protein compare
PFLU_RS28665 -1.1 -7.8 threonine ammonia-lyase, biosynthetic compare
PFLU_RS29310 -1.1 -1.2 accessory factor UbiK family protein compare
PFLU_RS08160 -1.1 -4.2 sugar transferase compare
PFLU_RS29755 -1.1 -6.6 phosphate ABC transporter ATP-binding protein compare
PFLU_RS24205 -1.1 -1.7 DNA binding protein compare
PFLU_RS03380 -1.1 -4.4 chromosome partitioning protein compare


Specific Phenotypes

For 1 genes in this experiment

For no stress control p-Coumaric acid in Pseudomonas fluorescens SBW25-INTG

For no stress control p-Coumaric acid across organisms