Experiment set14IT013 for Burkholderia phytofirmans PsJN

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
BPHYT_RS18255 -5.6 -2.7 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS03480 -5.2 -4.4 ferritin compare
BPHYT_RS16710 -4.8 -1.2 LysR family transcriptional regulator compare
BPHYT_RS33030 -4.5 -1.1 hypothetical protein compare
BPHYT_RS12535 -4.4 -1.1 membrane protein compare
BPHYT_RS01485 -4.3 -1.0 histidine kinase compare
BPHYT_RS14550 -4.2 -1.0 tRNA-Asn compare
BPHYT_RS01625 -4.2 -2.7 chemotaxis protein CheY compare
BPHYT_RS09385 -4.2 -1.0 FAD-dependent oxidoreductase compare
BPHYT_RS30465 -4.2 -1.0 short-chain dehydrogenase compare
BPHYT_RS16245 -4.1 -3.2 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17520 -3.9 -5.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS33610 -3.4 -1.2 DNA polymerase I compare
BPHYT_RS16270 -3.4 -2.0 phosphoglycerate kinase compare
BPHYT_RS24630 -3.4 -2.6 (2Fe-2S)-binding protein compare
BPHYT_RS09515 -3.3 -4.1 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS10400 -3.2 -1.1 taurine ABC transporter permease compare
BPHYT_RS18320 -3.2 -6.9 orotate phosphoribosyltransferase compare
BPHYT_RS16835 -3.2 -3.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS15415 -3.2 -9.5 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS03725 -3.1 -1.3 serine hydroxymethyltransferase compare
BPHYT_RS12840 -3.1 -4.3 pyruvate dehydrogenase compare
BPHYT_RS24315 -3.1 -1.8 phosphoribosyltransferase compare
BPHYT_RS02435 -2.9 -0.9 hypothetical protein compare
BPHYT_RS12465 -2.9 -2.4 inositol monophosphatase compare
BPHYT_RS00115 -2.8 -1.1 acetaldehyde dehydrogenase compare
BPHYT_RS25815 -2.7 -1.6 deoxyribose-phosphate aldolase compare
BPHYT_RS03640 -2.6 -2.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS13450 -2.6 -1.4 GntR family transcriptional regulator compare
BPHYT_RS33920 -2.5 -5.3 type II citrate synthase compare
BPHYT_RS02570 -2.5 -7.9 phosphocarrier protein HPr compare
BPHYT_RS17095 -2.5 -2.0 proline--tRNA ligase compare
BPHYT_RS25770 -2.5 -1.2 hypothetical protein compare
BPHYT_RS16255 -2.4 -2.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS03400 -2.4 -1.1 ATP-dependent DNA helicase RecG compare
BPHYT_RS18965 -2.3 -1.3 chemotaxis protein CheY compare
BPHYT_RS06405 -2.3 -2.9 phosphoribosylamine--glycine ligase compare
BPHYT_RS18910 -2.2 -1.7 FlgN compare
BPHYT_RS15890 -2.2 -1.2 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS27030 -2.2 -1.3 transcriptional regulator compare
BPHYT_RS13200 -2.2 -1.8 molybdopterin binding oxidoreductase compare
BPHYT_RS14855 -2.2 -3.0 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS11805 -2.2 -1.8 hypothetical protein compare
BPHYT_RS26285 -2.1 -2.7 glycogen debranching protein compare
BPHYT_RS14735 -2.1 -1.1 hypothetical protein compare
BPHYT_RS09545 -2.1 -1.9 peptide methionine sulfoxide reductase compare
BPHYT_RS12845 -2.1 -10.1 ATPase compare
BPHYT_RS01620 -2.1 -7.6 sensor histidine kinase compare
BPHYT_RS20840 -2.1 -1.4 beta-lactamase compare
BPHYT_RS25950 -2.1 -2.9 sensor histidine kinase compare
BPHYT_RS06550 -2.0 -1.8 acetolactate synthase compare
BPHYT_RS18710 -2.0 -3.0 membrane protein compare
BPHYT_RS26840 -2.0 -3.0 NADH dehydrogenase compare
BPHYT_RS33580 -2.0 -4.6 geranyltranstransferase compare
BPHYT_RS31400 -2.0 -1.1 methyl-accepting chemotaxis protein compare
BPHYT_RS16735 -1.9 -4.0 phosphogluconate dehydratase compare
BPHYT_RS10395 -1.9 -2.0 sulfonate ABC transporter compare
BPHYT_RS06710 -1.9 -1.0 hypothetical protein compare
BPHYT_RS22470 -1.9 -1.3 hydrolase compare
BPHYT_RS13645 -1.9 -8.7 threonine--tRNA ligase compare
BPHYT_RS13390 -1.8 -0.8 IclR family transcriptional regulator compare
BPHYT_RS34745 -1.8 -0.7 hypothetical protein compare
BPHYT_RS15305 -1.8 -6.5 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS17530 -1.8 -2.2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS25885 -1.8 -1.6 type III secretion protein compare
BPHYT_RS26025 -1.8 -0.7 hypothetical protein compare
BPHYT_RS27920 -1.8 -1.1 tricarballylate utilization protein B compare
BPHYT_RS21975 -1.8 -2.5 2-dehydropantoate 2-reductase compare
BPHYT_RS10345 -1.8 -0.8 flagellar motor protein MotB compare
BPHYT_RS05030 -1.8 -1.6 sugar ABC transporter permease compare
BPHYT_RS30750 -1.8 -1.6 GntR family transcriptional regulator compare
BPHYT_RS26355 -1.8 -1.2 hypothetical protein compare
BPHYT_RS09565 -1.7 -1.1 acetyl-CoA acetyltransferase compare
BPHYT_RS04290 -1.7 -1.4 glycosyl transferase family 2 compare
BPHYT_RS32880 -1.7 -1.0 alanine acetyltransferase compare
BPHYT_RS08880 -1.7 -2.7 phosphate transport regulator compare
BPHYT_RS20505 -1.7 -1.1 carboxymethylenebutenolidase compare
BPHYT_RS06985 -1.7 -3.9 fumarate hydratase compare
BPHYT_RS02590 -1.7 -4.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS12725 -1.7 -7.7 regulator compare
BPHYT_RS10040 -1.6 -0.8 hypothetical protein compare
BPHYT_RS05290 -1.6 -0.9 hypothetical protein compare
BPHYT_RS08955 -1.6 -2.9 homoserine dehydrogenase compare
BPHYT_RS17700 -1.6 -2.1 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS10240 -1.6 -0.9 translation initiation inhibitor compare
BPHYT_RS04890 -1.6 -1.2 cobalamin biosynthesis protein CobD compare
BPHYT_RS29035 -1.6 -1.1 arsenic transporter compare
BPHYT_RS29620 -1.6 -0.7 hypothetical protein compare
BPHYT_RS05610 -1.6 -4.5 DNA-cytosine methyltransferase compare
BPHYT_RS18590 -1.6 -0.6 hypothetical protein compare
BPHYT_RS26910 -1.5 -1.9 hypothetical protein compare
BPHYT_RS08125 -1.5 -5.6 ATPase compare
BPHYT_RS14485 -1.5 -2.7 ribonuclease E compare
BPHYT_RS17690 -1.5 -4.8 imidazole glycerol phosphate synthase compare
BPHYT_RS08250 -1.5 -2.0 hypothetical protein compare
BPHYT_RS22930 -1.5 -1.3 type II secretion system protein compare
BPHYT_RS12825 -1.5 -1.9 phasin family protein compare
BPHYT_RS28470 -1.5 -0.6 hypothetical protein compare
BPHYT_RS17675 -1.5 -2.0 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS10140 -1.5 -2.2 ABC transporter substrate-binding protein compare
BPHYT_RS15670 -1.5 -2.9 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS07920 -1.5 -1.4 hypothetical protein compare
BPHYT_RS11285 -1.5 -1.9 LacI family transcription regulator compare
BPHYT_RS02575 -1.5 -6.4 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS12510 -1.5 -1.5 RNA-binding protein compare
BPHYT_RS35245 -1.5 -1.3 hypothetical protein compare
BPHYT_RS14195 -1.5 -1.3 carbamoyl phosphate synthase small subunit compare
BPHYT_RS09825 -1.5 -1.4 Fe-S protein compare
BPHYT_RS06075 -1.5 -3.3 hypothetical protein compare
BPHYT_RS24665 -1.4 -0.8 ABC transporter permease compare
BPHYT_RS16320 -1.4 -2.9 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS20380 -1.4 -1.4 LysR family transcriptional regulator compare
BPHYT_RS07760 -1.4 -1.4 diguanylate phosphodiesterase compare
BPHYT_RS18655 -1.4 -2.4 3-oxoacyl-ACP synthase compare
BPHYT_RS02540 -1.4 -1.2 hypothetical protein compare
BPHYT_RS18760 -1.4 -1.7 flagellar biosynthesis protein FliT compare
BPHYT_RS17685 -1.4 -2.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS19610 -1.4 -1.4 general secretion pathway protein GspC compare
BPHYT_RS07325 -1.4 -0.7 GntR family transcriptional regulator compare
BPHYT_RS03475 -1.4 -4.6 catalase compare
BPHYT_RS32690 -1.4 -3.0 acyl-CoA dehydrogenase compare
BPHYT_RS03925 -1.3 -2.4 LysR family transcriptional regulator compare
BPHYT_RS08525 -1.3 -0.8 SAM-dependent methyltransferase compare
BPHYT_RS11755 -1.3 -1.3 spermidine/putrescine ABC transporter substrate-binding protein compare
BPHYT_RS20845 -1.3 -1.1 peroxidase compare
BPHYT_RS17680 -1.3 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS08130 -1.3 -0.8 transposase compare
BPHYT_RS25095 -1.3 -1.4 AraC family transcriptional regulator compare
BPHYT_RS25980 -1.3 -0.7 urea carboxylase compare
BPHYT_RS23940 -1.3 -0.9 GntR family transcriptional regulator compare
BPHYT_RS30890 -1.3 -0.8 hypothetical protein compare
BPHYT_RS17920 -1.3 -1.0 protein CyaY compare
BPHYT_RS20430 -1.3 -1.9 3-dehydroquinate dehydratase compare
BPHYT_RS08945 -1.3 -5.4 hypothetical protein compare
BPHYT_RS25070 -1.3 -0.9 choline ABC transporter permease compare
BPHYT_RS28065 -1.3 -0.9 hypothetical protein compare
BPHYT_RS17100 -1.3 -2.5 RNA pyrophosphohydrolase compare
BPHYT_RS01965 -1.3 -1.0 tRNA-Ala compare
BPHYT_RS11610 -1.3 -2.3 peroxiredoxin compare
BPHYT_RS06900 -1.3 -2.3 aspartate aminotransferase compare
BPHYT_RS24010 -1.2 -0.9 L-histidine ABC transporter, permease component 2 (from data) compare
BPHYT_RS10470 -1.2 -1.8 hypothetical protein compare
BPHYT_RS34430 -1.2 -0.8 2-keto-4-pentenoate hydratase compare
BPHYT_RS17445 -1.2 -1.7 GTP-binding protein YchF compare
BPHYT_RS12380 -1.2 -1.0 ABC transporter permease compare
BPHYT_RS29655 -1.2 -1.8 polysaccharide deacetylase compare
BPHYT_RS06160 -1.2 -2.8 glutamyl-Q tRNA(Asp) ligase compare
BPHYT_RS00770 -1.2 -0.7 conjugal transfer protein TraC compare
BPHYT_RS14380 -1.2 -2.5 elongation factor 4 compare
BPHYT_RS19435 -1.2 -1.6 16S rRNA methyltransferase compare
BPHYT_RS36240 -1.2 -1.1 hypothetical protein compare
BPHYT_RS14135 -1.2 -1.7 phosphate transporter permease subunit PtsA compare
BPHYT_RS22915 -1.2 -2.1 pilus assembly protein CpaE compare
BPHYT_RS12280 -1.2 -0.8 RNA helicase compare
BPHYT_RS34295 -1.2 -0.5 fimbrial protein compare
BPHYT_RS08850 -1.2 -0.8 transcriptional regulator compare
BPHYT_RS22145 -1.2 -1.1 phosphoesterase compare
BPHYT_RS08885 -1.1 -2.9 inorganic phosphate transporter compare
BPHYT_RS28945 -1.1 -1.6 endo-1,4-D-glucanase compare
BPHYT_RS30455 -1.1 -1.9 transketolase compare
BPHYT_RS05455 -1.1 -1.4 AraC family transcriptional regulator compare
BPHYT_RS10095 -1.1 -1.8 integrase compare
BPHYT_RS06555 -1.1 -4.0 ketol-acid reductoisomerase compare
BPHYT_RS28440 -1.1 -1.3 heat shock Hsp20 compare
BPHYT_RS00160 -1.1 -1.1 ABC transporter substrate-binding protein compare
BPHYT_RS26300 -1.1 -0.7 ATP-dependent DNA ligase compare
BPHYT_RS14140 -1.1 -2.1 phosphate transporter permease subunit PstC compare
BPHYT_RS34500 -1.1 -2.0 hypothetical protein compare
BPHYT_RS01530 -1.1 -1.1 penicillin-binding protein 2 compare
BPHYT_RS17490 -1.1 -1.1 haloacid dehalogenase compare
BPHYT_RS00955 -1.1 -2.0 DNA polymerase compare
BPHYT_RS03580 -1.1 -1.8 RNA-binding protein S4 compare
BPHYT_RS26900 -1.1 -2.5 isoprenylcysteine carboxyl methyltransferase compare
BPHYT_RS11235 -1.1 -0.5 hypothetical protein compare
BPHYT_RS14190 -1.1 -2.9 carbamoyl phosphate synthase large subunit compare
BPHYT_RS34355 -1.1 -7.1 histidine kinase compare
BPHYT_RS21470 -1.1 -0.8 6-hydroxynicotinate reductase compare
BPHYT_RS03215 -1.1 -1.0 TetR family transcriptional regulator compare
BPHYT_RS13320 -1.1 -0.6 allantoate amidohydrolase compare
BPHYT_RS32150 -1.1 -1.0 hypothetical protein compare
BPHYT_RS27495 -1.1 -0.7 hypothetical protein compare
BPHYT_RS21330 -1.1 -1.0 hypothetical protein compare
BPHYT_RS20880 -1.1 -0.6 polyketide cyclase compare
BPHYT_RS33620 -1.1 -3.9 transcriptional regulator compare
BPHYT_RS25970 -1.1 -0.7 urea amidolyase compare
BPHYT_RS28600 -1.1 -1.0 ArsC family transcriptional regulator compare
BPHYT_RS10925 -1.1 -1.3 aldehyde dehydrogenase compare
BPHYT_RS28920 -1.1 -0.9 cellulose synthase compare
BPHYT_RS33950 -1.1 -5.1 GntR family transcriptional regulator compare
BPHYT_RS08135 -1.1 -0.9 hypothetical protein compare
BPHYT_RS22755 -1.1 -1.2 LacI family transcription regulator compare
BPHYT_RS21595 -1.1 -1.2 TetR family transcriptional regulator compare
BPHYT_RS04455 -1.0 -1.0 glycosyl transferase compare
BPHYT_RS26705 -1.0 -2.2 hypothetical protein compare
BPHYT_RS06285 -1.0 -2.5 diguanylate cyclase compare
BPHYT_RS04720 -1.0 -2.4 transcriptional regulator compare
BPHYT_RS33840 -1.0 -2.9 amidophosphoribosyltransferase compare
BPHYT_RS01920 -1.0 -6.1 AsnC family transcriptional regulator compare
BPHYT_RS31950 -1.0 -1.1 short-chain dehydrogenase compare
BPHYT_RS06345 -1.0 -3.1 sensor histidine kinase compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered in Burkholderia phytofirmans PsJN

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered across organisms