Experiment set14IT013 for Burkholderia phytofirmans PsJN

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS05730 +2.2 6.2 hypothetical protein compare
BPHYT_RS20095 +2.1 1.3 transcriptional regulator compare
BPHYT_RS02755 +1.9 2.1 cyd operon protein YbgT compare
BPHYT_RS25780 +1.9 1.6 DeoR faimly transcriptional regulator compare
BPHYT_RS27890 +1.7 1.4 hypothetical protein compare
BPHYT_RS36385 +1.7 1.5 TetR family transcriptional regulator compare
BPHYT_RS35750 +1.6 1.6 hypothetical protein compare
BPHYT_RS02005 +1.6 2.4 diguanylate phosphodiesterase compare
BPHYT_RS27175 +1.6 1.3 DNA-binding protein compare
BPHYT_RS26525 +1.6 1.8 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS25135 +1.6 2.9 hypothetical protein compare
BPHYT_RS04335 +1.5 2.0 membrane protein compare
BPHYT_RS10675 +1.5 2.7 muconate cycloisomerase compare
BPHYT_RS23920 +1.5 1.7 malonate decarboxylase subunit beta compare
BPHYT_RS11000 +1.5 2.3 glutathione S-transferase compare
BPHYT_RS12615 +1.5 2.9 dihydrodipicolinate synthase compare
BPHYT_RS16990 +1.5 3.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BPHYT_RS02765 +1.5 1.9 cytochrome BD oxidase subunit I compare
BPHYT_RS30645 +1.5 2.0 hypothetical protein compare
BPHYT_RS25875 +1.4 1.7 type III secretion protein compare
BPHYT_RS23990 +1.4 1.9 N-hydroxyarylamine O-acetyltransferase compare
BPHYT_RS03945 +1.4 2.5 hypothetical protein compare
BPHYT_RS26490 +1.4 1.5 hypothetical protein compare
BPHYT_RS07835 +1.4 1.9 muconolactone delta-isomerase compare
BPHYT_RS03470 +1.4 4.0 LysR family transcriptional regulator compare
BPHYT_RS29840 +1.4 1.2 polysaccharide biosynthesis protein compare
BPHYT_RS23210 +1.4 1.9 MFS transporter compare
BPHYT_RS34655 +1.3 1.3 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS30775 +1.3 2.1 gluconate 2-dehydrogenase compare
BPHYT_RS24580 +1.3 1.8 hypothetical protein compare
BPHYT_RS32210 +1.3 2.0 hypothetical protein compare
BPHYT_RS05735 +1.3 4.0 virulence protein E compare
BPHYT_RS26570 +1.3 1.0 5'-nucleotidase compare
BPHYT_RS31510 +1.3 4.0 sulfonate ABC transporter substrate-binding protein compare
BPHYT_RS33965 +1.3 1.4 methylcitrate synthase compare
BPHYT_RS35120 +1.3 2.1 hypothetical protein compare
BPHYT_RS20970 +1.3 1.8 hypothetical protein compare
BPHYT_RS02010 +1.3 1.5 copper homeostasis protein CutC compare
BPHYT_RS21070 +1.2 2.0 ferredoxin compare
BPHYT_RS02595 +1.2 1.1 sulfurtransferase compare
BPHYT_RS20055 +1.2 2.1 hypothetical protein compare
BPHYT_RS33050 +1.2 3.8 LuxR family transcriptional regulator compare
BPHYT_RS27410 +1.2 1.8 amidohydrolase compare
BPHYT_RS05825 +1.2 1.2 hypothetical protein compare
BPHYT_RS10065 +1.2 2.0 cytochrome C oxidase subunit I compare
BPHYT_RS05365 +1.2 1.4 3-ketoacyl-ACP reductase compare
BPHYT_RS22505 +1.2 2.1 alpha/beta hydrolase compare
BPHYT_RS32395 +1.2 1.3 hypothetical protein compare
BPHYT_RS26185 +1.2 1.4 thioesterase compare
BPHYT_RS11155 +1.1 1.2 hypothetical protein compare
BPHYT_RS34050 +1.1 2.2 secretion system protein F compare
BPHYT_RS31730 +1.1 3.1 aminotransferase class III compare
BPHYT_RS29500 +1.1 1.4 hypothetical protein compare
BPHYT_RS28305 +1.1 1.5 protein tyrosine phosphatase compare
BPHYT_RS01585 +1.1 5.7 major facilitator superfamily protein compare
BPHYT_RS33460 +1.1 1.0 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS25045 +1.1 2.6 LysR family transcriptional regulator compare
BPHYT_RS20070 +1.1 2.0 hypothetical protein compare
BPHYT_RS31890 +1.1 1.5 transposase compare
BPHYT_RS05905 +1.1 1.3 hypothetical protein compare
BPHYT_RS24440 +1.1 2.3 type VI secretion protein compare
BPHYT_RS10720 +1.1 1.1 hypothetical protein compare
BPHYT_RS04095 +1.1 0.7 SAM-dependent methyltransferase PhcB compare
BPHYT_RS13325 +1.1 2.4 TetR family transcriptional regulator compare
BPHYT_RS11990 +1.1 2.5 hypothetical protein compare
BPHYT_RS21215 +1.1 3.1 Crp/Fnr family transcriptional regulator compare
BPHYT_RS11930 +1.1 2.1 3-hydroxybutyrate dehydrogenase compare
BPHYT_RS07570 +1.1 1.0 hypothetical protein compare
BPHYT_RS17240 +1.1 0.9 cell division protein FtsW compare
BPHYT_RS13885 +1.1 1.3 myo-inositol 2-dehydrogenase compare
BPHYT_RS05330 +1.0 1.5 phosphohydrolase compare
BPHYT_RS02725 +1.0 1.5 GntR family transcriptional regulator compare
BPHYT_RS11810 +1.0 1.4 LysR family transcriptional regulator compare
BPHYT_RS29485 +1.0 1.3 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS32905 +1.0 3.4 FAD-linked oxidase compare
BPHYT_RS11255 +1.0 2.7 AsnC family transcriptional regulator compare
BPHYT_RS24590 +1.0 0.9 DeoR faimly transcriptional regulator compare
BPHYT_RS36440 +1.0 1.7 hypothetical protein compare
BPHYT_RS05675 +1.0 4.2 hypothetical protein compare
BPHYT_RS24925 +1.0 1.3 cytochrome O ubiquinol oxidase compare
BPHYT_RS26305 +1.0 2.6 exonuclease compare
BPHYT_RS25410 +1.0 3.0 porin compare
BPHYT_RS28875 +1.0 2.6 5-oxo-1,2,5-tricarboxylic-3-penten acid decarboxylase compare
BPHYT_RS31345 +1.0 1.7 malonate transporter compare
BPHYT_RS28075 +1.0 0.9 cytochrome B561 compare
BPHYT_RS29450 +1.0 1.6 phosphonate metabolism protein compare
BPHYT_RS11975 +1.0 3.0 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS24060 +1.0 2.7 FAD-linked oxidase compare
BPHYT_RS11820 +1.0 2.7 amidohydrolase compare
BPHYT_RS25445 +1.0 1.8 alkyl hydroperoxide reductase compare
BPHYT_RS07855 +1.0 2.9 benzoate 1,2-dioxygenase subunit alpha compare
BPHYT_RS29060 +1.0 3.0 hypothetical protein compare
BPHYT_RS13470 +1.0 0.8 arylsulfate sulfotransferase compare
BPHYT_RS14585 +1.0 1.6 hypothetical protein compare
BPHYT_RS29630 +1.0 1.9 SAM-dependent methyltransferase compare
BPHYT_RS32280 +1.0 1.9 membrane protein compare
BPHYT_RS14900 +1.0 2.0 prephenate dehydrogenase compare
BPHYT_RS09970 +1.0 2.8 glutathione S-transferase compare
BPHYT_RS22200 +1.0 2.9 cardiolipin synthetase compare
BPHYT_RS11915 +1.0 1.4 hypothetical protein compare
BPHYT_RS09280 +1.0 1.0 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS27505 +1.0 1.6 hypothetical protein compare
BPHYT_RS20755 +0.9 1.3 fuconate dehydratase compare
BPHYT_RS32815 +0.9 1.5 sugar ABC transporter compare
BPHYT_RS34035 +0.9 1.5 type II and III secretion system outermembrane protein, secretin compare
BPHYT_RS16175 +0.9 1.3 hemolysin D compare
BPHYT_RS21235 +0.9 3.5 hypothetical protein compare
BPHYT_RS13395 +0.9 1.5 endoribonuclease L-PSP compare
BPHYT_RS20745 +0.9 2.5 ribose ABC transporter permease compare
BPHYT_RS11775 +0.9 3.2 AraC family transcriptional regulator compare
BPHYT_RS28660 +0.9 0.9 polyvinylalcohol dehydrogenase compare
BPHYT_RS04500 +0.9 2.3 urease accessory protein UreF compare
BPHYT_RS22265 +0.9 1.2 hypothetical protein compare
BPHYT_RS33165 +0.9 3.3 AraC family transcriptional regulator compare
BPHYT_RS35955 +0.9 1.1 hypothetical protein compare
BPHYT_RS10850 +0.9 0.9 LysR family transcriptional regulator compare
BPHYT_RS36250 +0.9 2.0 hypothetical protein compare
BPHYT_RS17735 +0.9 2.8 ABC transporter ATP-binding protein compare
BPHYT_RS25235 +0.9 1.6 LysR family transcriptional regulator compare
BPHYT_RS33220 +0.9 5.1 group 1 glycosyl transferase compare
BPHYT_RS24040 +0.9 1.7 amino acid ABC transporter compare
BPHYT_RS17890 +0.9 0.7 shikimate kinase compare
BPHYT_RS25605 +0.9 2.2 symporter compare
BPHYT_RS01790 +0.9 6.2 LuxR family transcriptional regulator compare
BPHYT_RS02930 +0.9 1.5 KpsF/GutQ family protein compare
BPHYT_RS01280 +0.9 1.5 hypothetical protein compare
BPHYT_RS10005 +0.9 1.2 hypothetical protein compare
BPHYT_RS11750 +0.9 1.2 spermidine/putrescine ABC transporter ATP-binding protein compare
BPHYT_RS05910 +0.9 1.7 hypothetical protein compare
BPHYT_RS10185 +0.9 1.5 MarR family transcriptional regulator compare
BPHYT_RS35310 +0.9 0.7 GCN5 family N-acetyltransferase compare
BPHYT_RS02610 +0.9 3.3 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS21505 +0.9 1.1 amidohydrolase compare
BPHYT_RS35215 +0.9 0.7 dehydrogenase compare
BPHYT_RS21715 +0.9 2.5 taurine ABC transporter permease compare
BPHYT_RS36175 +0.9 1.9 hypothetical protein compare
BPHYT_RS28880 +0.9 1.7 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS34560 +0.9 1.3 hypothetical protein compare
BPHYT_RS29890 +0.9 0.9 LysR family transcriptional regulator compare
BPHYT_RS21645 +0.9 2.0 LysR family transcriptional regulator compare
BPHYT_RS21460 +0.9 1.2 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS07515 +0.9 1.3 photosystem reaction center subunit H compare
BPHYT_RS20225 +0.9 3.9 taurine catabolism dioxygenase tauD/tfdA compare
BPHYT_RS25565 +0.9 1.6 hypothetical protein compare
BPHYT_RS05725 +0.9 1.6 hypothetical protein compare
BPHYT_RS13890 +0.9 2.2 RpiR family transcriptional regulator compare
BPHYT_RS20545 +0.9 0.8 hypothetical protein compare
BPHYT_RS28965 +0.9 1.5 hypothetical protein compare
BPHYT_RS34650 +0.9 3.7 l-threonine 3-dehydrogenase compare
BPHYT_RS11685 +0.8 0.9 phasin family protein compare
BPHYT_RS07155 +0.8 3.3 peptide ABC transporter substrate-binding protein compare
BPHYT_RS30490 +0.8 0.8 2-haloalkanoic acid dehalogenase compare
BPHYT_RS11995 +0.8 2.5 flagellar hook protein FlgE compare
BPHYT_RS04340 +0.8 1.5 hypothetical protein compare
BPHYT_RS04015 +0.8 1.3 glycosyl transferase compare
BPHYT_RS29850 +0.8 1.5 protein tyrosine kinase compare
BPHYT_RS02365 +0.8 0.9 hypothetical protein compare
BPHYT_RS28090 +0.8 2.2 ferredoxin compare
BPHYT_RS09315 +0.8 0.7 chemotaxis protein CheY compare
BPHYT_RS31060 +0.8 0.8 capsular polysaccharide biosynthesis protein compare
BPHYT_RS20110 +0.8 3.3 sensor histidine kinase compare
BPHYT_RS27065 +0.8 1.0 hypothetical protein compare
BPHYT_RS28620 +0.8 1.1 enoyl-CoA hydratase compare
BPHYT_RS13810 +0.8 2.4 type VI secretion protein compare
BPHYT_RS31560 +0.8 2.8 hypothetical protein compare
BPHYT_RS24250 +0.8 2.2 GCN5 family acetyltransferase compare
BPHYT_RS33870 +0.8 2.6 DNA methylase N-4 compare
BPHYT_RS04430 +0.8 0.9 amino acid ABC transporter ATPase compare
BPHYT_RS01795 +0.8 4.7 histidine kinase compare
BPHYT_RS15955 +0.8 1.8 methylated-DNA--protein-cysteine methyltransferase compare
BPHYT_RS32820 +0.8 1.6 xylose ABC transporter substrate-binding protein compare
BPHYT_RS06435 +0.8 1.3 hypothetical protein compare
BPHYT_RS00270 +0.8 2.8 branched-chain amino acid ABC transporter compare
BPHYT_RS02275 +0.8 2.0 short-chain dehydrogenase compare
BPHYT_RS29805 +0.8 1.9 lysine transporter LysE compare
BPHYT_RS07475 +0.8 1.2 nitrate reductase compare
BPHYT_RS20850 +0.8 1.9 multidrug DMT transporter permease compare
BPHYT_RS32900 +0.8 2.9 MFS transporter compare
BPHYT_RS28625 +0.8 1.0 major facilitator transporter compare
BPHYT_RS36220 +0.8 0.8 hypothetical protein compare
BPHYT_RS36360 +0.8 1.1 hypothetical protein compare
BPHYT_RS00900 +0.8 1.4 beta-lactamase compare
BPHYT_RS32985 +0.8 2.3 hypothetical protein compare
BPHYT_RS06020 +0.8 1.6 hypothetical protein compare
BPHYT_RS30200 +0.8 1.4 FAD-dependent oxidoreductase compare
BPHYT_RS26465 +0.8 0.8 metallophosphoesterase compare
BPHYT_RS11840 +0.8 1.5 LysR family transcriptional regulator compare
BPHYT_RS31700 +0.8 1.4 porin compare
BPHYT_RS11895 +0.8 1.5 peroxiredoxin compare
BPHYT_RS01825 +0.8 1.4 sugar ABC transporter substrate-binding protein compare
BPHYT_RS20900 +0.8 1.5 phytanoyl-CoA dioxygenase compare
BPHYT_RS00350 +0.8 2.4 hypothetical protein compare
BPHYT_RS31695 +0.8 1.7 dihydroxy-acid dehydratase compare
BPHYT_RS16815 +0.8 1.6 ureidoglycolate hydrolase compare
BPHYT_RS11875 +0.8 2.1 histidine kinase compare
BPHYT_RS27370 +0.8 1.3 CoA transferase compare
BPHYT_RS27865 +0.8 1.1 ATPase compare
BPHYT_RS27085 +0.8 1.0 alkylhydroperoxidase compare
BPHYT_RS10705 +0.8 2.5 MFS transporter compare
BPHYT_RS19930 +0.8 1.7 transcriptional regulator compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered in Burkholderia phytofirmans PsJN

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered across organisms