Experiment set14IT011 for Pseudomonas fluorescens SBW25-INTG

Compare to:

D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with Sodium chloride

200 most important genes:

  gene name fitness t score description  
PFLU_RS28645 -5.3 -9.6 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS28385 -5.2 -5.1 homoserine O-acetyltransferase compare
PFLU_RS28390 -5.0 -6.8 methionine biosynthesis protein MetW compare
PFLU_RS01400 -4.9 -6.7 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS01895 -4.8 -4.7 phosphoribosyl-ATP diphosphatase compare
PFLU_RS28535 -4.8 -8.1 dihydroxy-acid dehydratase compare
PFLU_RS20510 -4.8 -4.7 O-succinylhomoserine sulfhydrylase compare
PFLU_RS08410 -4.7 -5.5 HTH-type transcriptional regulator CysB compare
PFLU_RS25640 -4.6 -6.3 ketol-acid reductoisomerase compare
PFLU_RS23115 -4.5 -12.4 dicarboxylate/amino acid:cation symporter compare
PFLU_RS04465 -4.5 -7.6 ATP phosphoribosyltransferase compare
PFLU_RS04150 -4.5 -9.6 DUF1043 family protein compare
PFLU_RS27370 -4.5 -8.0 anthranilate phosphoribosyltransferase compare
PFLU_RS03970 -4.4 -9.0 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS20575 -4.4 -5.3 3-isopropylmalate dehydratase small subunit compare
PFLU_RS20580 -4.4 -6.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS20565 -4.4 -7.3 3-isopropylmalate dehydrogenase compare
PFLU_RS02590 -4.3 -6.6 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS27365 -4.3 -10.0 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS01900 -4.3 -2.9 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS20540 -4.3 -5.1 phosphoribosylanthranilate isomerase compare
PFLU_RS02490 -4.2 -12.7 phosphoserine phosphatase SerB compare
PFLU_RS29780 -4.2 -5.0 acyl-CoA thioesterase compare
PFLU_RS28165 -4.1 -7.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS07940 -4.1 -10.5 malate dehydrogenase (quinone) compare
PFLU_RS00180 -4.0 -4.7 tryptophan synthase subunit beta compare
PFLU_RS01620 -3.9 -3.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS29095 -3.9 -25.3 polyphosphate kinase 1 compare
PFLU_RS24765 -3.9 -20.6 2-isopropylmalate synthase compare
PFLU_RS07650 -3.9 -13.1 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS04470 -3.9 -8.2 histidinol dehydrogenase compare
PFLU_RS01605 -3.8 -6.4 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS00175 -3.7 -4.5 tryptophan synthase subunit alpha compare
PFLU_RS26535 -3.7 -8.3 thiamine phosphate synthase compare
PFLU_RS07640 -3.7 -10.3 universal stress protein compare
PFLU_RS07230 -3.6 -9.4 RNA polymerase sigma factor RpoE compare
PFLU_RS26530 -3.6 -13.5 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS12975 -3.6 -2.5 DUF934 domain-containing protein compare
PFLU_RS29515 -3.6 -11.6 RidA family protein compare
PFLU_RS24025 -3.5 -11.5 quinolinate synthase NadA compare
PFLU_RS04220 -3.4 -6.1 FadR family transcriptional regulator compare
PFLU_RS19720 -3.4 -2.3 hypothetical protein compare
PFLU_RS07255 -3.4 -5.6 sulfurtransferase TusA family protein compare
PFLU_RS28655 -3.4 -10.5 HAD family hydrolase compare
PFLU_RS14550 -3.3 -5.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS12980 -3.3 -3.2 nitrite/sulfite reductase compare
PFLU_RS18055 -3.3 -2.8 hydrolase compare
PFLU_RS10430 -3.3 -3.9 peptidase compare
PFLU_RS26205 -3.3 -12.5 YbdD/YjiX family protein compare
PFLU_RS08505 -3.2 -8.3 protease HtpX compare
PFLU_RS29480 -3.2 -10.7 exodeoxyribonuclease III compare
PFLU_RS28420 -3.2 -10.1 thiazole synthase compare
PFLU_RS06310 -3.2 -7.4 sigma E protease regulator RseP compare
PFLU_RS25715 -3.2 -3.1 RNA polymerase-binding protein DksA compare
PFLU_RS20515 -3.2 -2.2 amidophosphoribosyltransferase compare
PFLU_RS26210 -3.1 -17.7 carbon starvation protein A compare
PFLU_RS31010 -3.1 -2.5 transposase compare
PFLU_RS29760 -3.0 -12.3 phosphate ABC transporter permease PstA compare
PFLU_RS21995 -2.9 -4.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS23070 -2.9 -1.5 50S ribosomal protein L32 compare
PFLU_RS07970 -2.9 -13.3 LOG family protein compare
PFLU_RS07540 -2.9 -2.8 class II glutamine amidotransferase compare
PFLU_RS03665 -2.8 -5.7 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS18505 -2.8 -2.8 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS01625 -2.8 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS00415 -2.8 -1.9 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS01610 -2.8 -10.1 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS01995 -2.8 -11.2 malate dehydrogenase compare
PFLU_RS02365 -2.8 -10.2 glycosyltransferase compare
PFLU_RS02370 -2.7 -9.0 glycosyltransferase compare
PFLU_RS31710 -2.7 -3.2 hypothetical protein compare
PFLU_RS25360 -2.7 -7.5 glutamate 5-kinase compare
PFLU_RS00245 -2.7 -7.5 YheV family putative metal-binding protein compare
PFLU_RS29310 -2.7 -1.3 accessory factor UbiK family protein compare
PFLU_RS25750 -2.7 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS07685 -2.6 -3.9 transcriptional repressor LexA compare
PFLU_RS07665 -2.6 -1.8 type I DNA topoisomerase compare
PFLU_RS09055 -2.6 -1.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS17265 -2.6 -2.5 hypothetical protein compare
PFLU_RS11930 -2.5 -1.7 biopolymer transporter ExbD compare
PFLU_RS02430 -2.5 -13.9 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS07245 -2.4 -7.8 DegQ family serine endoprotease compare
PFLU_RS22105 -2.4 -5.7 cysteine synthase CysM compare
PFLU_RS30520 -2.4 -6.2 ketoacyl-ACP synthase III compare
PFLU_RS21060 -2.4 -4.9 TetR/AcrR family transcriptional regulator compare
PFLU_RS26635 -2.3 -3.6 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS07655 -2.3 -5.8 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS04315 -2.3 -2.7 rod shape-determining protein MreD compare
PFLU_RS13795 -2.3 -2.7 hypothetical protein compare
PFLU_RS00530 -2.3 -2.0 DUF2388 domain-containing protein compare
PFLU_RS19165 -2.3 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS23240 -2.3 -6.4 magnesium transporter compare
PFLU_RS29490 -2.3 -8.4 ribonuclease PH compare
PFLU_RS01765 -2.3 -7.8 histidine utilization repressor compare
PFLU_RS08185 -2.3 -7.0 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS01960 -2.3 -1.5 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS22895 -2.3 -16.1 PLP-dependent aminotransferase family protein compare
PFLU_RS12660 -2.3 -6.0 hypothetical protein compare
PFLU_RS12715 -2.2 -1.7 fumarylacetoacetate hydrolase family protein compare
PFLU_RS22740 -2.2 -1.5 phosphoadenylyl-sulfate reductase compare
PFLU_RS31830 -2.2 -1.5 hypothetical protein compare
PFLU_RS19555 -2.2 -2.1 histidine phosphatase family protein compare
PFLU_RS01285 -2.2 -1.5 HAMP domain-containing protein compare
PFLU_RS15410 -2.2 -1.5 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS24205 -2.2 -2.0 DNA binding protein compare
PFLU_RS10290 -2.1 -4.1 glucose 1-dehydrogenase compare
PFLU_RS28915 -2.1 -11.4 glycine cleavage system aminomethyltransferase GcvT compare
PFLU_RS14005 -2.1 -2.9 hypothetical protein compare
PFLU_RS08165 -2.1 -2.0 acyl carrier protein compare
PFLU_RS24860 -2.1 -1.4 Fe-S cluster assembly transcriptional regulator IscR compare
PFLU_RS23380 -2.1 -1.4 HAD-IB family hydrolase compare
PFLU_RS08840 -2.1 -11.0 ion transporter compare
PFLU_RS20335 -2.0 -2.9 hypothetical protein compare
PFLU_RS01965 -2.0 -1.4 ATP-dependent protease subunit HslV compare
PFLU_RS30525 -2.0 -7.5 SDR family oxidoreductase compare
PFLU_RS05210 -2.0 -2.6 HU family DNA-binding protein compare
PFLU_RS03755 -2.0 -10.0 PDZ domain-containing protein compare
PFLU_RS24720 -2.0 -6.9 trehalose operon repressor compare
PFLU_RS05630 -2.0 -1.6 amino acid ABC transporter ATP-binding protein compare
PFLU_RS25335 -2.0 -7.8 sulfate transporter CysZ compare
PFLU_RS27465 -2.0 -3.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS21935 -2.0 -13.0 sensor histidine kinase compare
PFLU_RS03535 -1.9 -3.2 YscO family type III secretion system apparatus protein compare
PFLU_RS04165 -1.9 -1.9 cell division protein ZapE compare
PFLU_RS27300 -1.9 -13.2 peptidoglycan DD-metalloendopeptidase family protein compare
PFLU_RS02355 -1.9 -6.0 GNAT family N-acetyltransferase compare
PFLU_RS01595 -1.9 -9.2 AsmA family protein compare
PFLU_RS00065 -1.9 -8.3 lysophospholipid acyltransferase compare
PFLU_RS21495 -1.8 -1.3 TlpA family protein disulfide reductase compare
PFLU_RS02625 -1.8 -9.3 ribonuclease R compare
PFLU_RS03240 -1.8 -10.8 copper-translocating P-type ATPase compare
PFLU_RS12175 -1.8 -1.7 methyl-accepting chemotaxis protein compare
PFLU_RS24590 -1.8 -2.6 cytochrome c assembly protein compare
PFLU_RS02580 -1.8 -5.0 FtsH protease activity modulator HflK compare
PFLU_RS25305 -1.8 -7.1 dihydromonapterin reductase compare
PFLU_RS23065 -1.8 -8.2 phosphate acyltransferase PlsX compare
PFLU_RS23310 -1.8 -8.2 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS07645 -1.8 -4.3 hypothetical protein compare
PFLU_RS08135 -1.8 -4.0 glycosyltransferase compare
PFLU_RS18600 -1.8 -4.3 GNAT family N-acetyltransferase compare
PFLU_RS28695 -1.8 -3.4 phosphoglycerate dehydrogenase compare
PFLU_RS28690 -1.7 -8.8 FAD-binding oxidoreductase compare
PFLU_RS26545 -1.7 -7.4 sel1 repeat family protein compare
PFLU_RS12580 -1.7 -7.0 MurR/RpiR family transcriptional regulator compare
PFLU_RS22095 -1.7 -10.2 GTP diphosphokinase compare
PFLU_RS16025 -1.7 -2.5 flavin-dependent monooxygenase compare
PFLU_RS20290 -1.7 -1.4 integration host factor subunit alpha compare
PFLU_RS16435 -1.7 -9.2 glycogen debranching protein GlgX compare
PFLU_RS18195 -1.7 -7.5 sugar-binding transcriptional regulator compare
PFLU_RS28325 -1.7 -6.0 energy transducer TonB compare
PFLU_RS19175 -1.7 -6.4 trigger factor compare
PFLU_RS14995 -1.6 -1.9 response regulator transcription factor compare
PFLU_RS13540 -1.6 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS22015 -1.6 -7.6 cobalamin biosynthesis protein compare
PFLU_RS23730 -1.6 -10.0 MurR/RpiR family transcriptional regulator compare
PFLU_RS02205 -1.6 -6.3 potassium/proton antiporter compare
PFLU_RS11525 -1.6 -3.0 GntR family transcriptional regulator compare
PFLU_RS28650 -1.6 -4.3 RNA pyrophosphohydrolase compare
PFLU_RS28950 -1.6 -5.3 YecA family protein compare
PFLU_RS13475 -1.6 -8.9 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
PFLU_RS08180 -1.6 -3.6 ketoacyl-ACP synthase III compare
PFLU_RS04065 -1.6 -6.6 ABC transporter permease compare
PFLU_RS08125 -1.6 -2.3 integration host factor subunit beta compare
PFLU_RS30515 -1.6 -4.0 Rieske 2Fe-2S domain-containing protein compare
PFLU_RS08160 -1.6 -3.7 sugar transferase compare
PFLU_RS16425 -1.6 -9.6 malto-oligosyltrehalose synthase compare
PFLU_RS03770 -1.6 -8.3 sulfate adenylyltransferase subunit CysN compare
PFLU_RS19170 -1.6 -3.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS24805 -1.6 -3.4 helix-turn-helix domain-containing protein compare
PFLU_RS29905 -1.6 -5.4 Tim44 domain-containing protein compare
PFLU_RS13085 -1.6 -3.1 DUF1315 family protein compare
PFLU_RS21155 -1.6 -7.4 rhodanese-related sulfurtransferase compare
PFLU_RS04715 -1.6 -3.6 D-alanine--D-alanine ligase compare
PFLU_RS25760 -1.5 -1.5 glucose-6-phosphate isomerase compare
PFLU_RS04055 -1.5 -7.2 ABC transporter permease compare
PFLU_RS26175 -1.5 -6.2 NADP-specific glutamate dehydrogenase compare
PFLU_RS28470 -1.5 -4.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
PFLU_RS23680 -1.5 -10.1 long-chain fatty acid--CoA ligase compare
PFLU_RS28850 -1.5 -10.7 OprD family porin compare
PFLU_RS25115 -1.5 -4.0 cytochrome c family protein compare
PFLU_RS14050 -1.5 -1.7 hypothetical protein compare
PFLU_RS30800 -1.5 -4.1 ThiF family adenylyltransferase compare
PFLU_RS11560 -1.5 -3.3 aldolase compare
PFLU_RS26250 -1.5 -8.6 ferredoxin--NADP reductase compare
PFLU_RS23295 -1.5 -6.2 N-succinylarginine dihydrolase compare
PFLU_RS16410 -1.5 -10.5 glycogen synthase GlgA compare
PFLU_RS31065 -1.5 -2.5 helix-turn-helix domain-containing protein compare
PFLU_RS27475 -1.5 -1.5 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS09005 -1.5 -8.9 molecular chaperone HtpG compare
PFLU_RS18350 -1.5 -2.2 GIY-YIG nuclease family protein compare
PFLU_RS15910 -1.5 -1.6 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS12685 -1.5 -2.9 hypothetical protein compare
PFLU_RS15310 -1.5 -1.9 YgdI/YgdR family lipoprotein compare
PFLU_RS22045 -1.5 -6.4 peptidase P60 compare
PFLU_RS26640 -1.5 -7.2 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS22070 -1.5 -2.4 phosphoribosylglycinamide formyltransferase compare
PFLU_RS31610 -1.5 -4.4 putative transporter-like protein compare
PFLU_RS30900 -1.5 -1.5 hypothetical protein compare
PFLU_RS19160 -1.5 -6.3 endopeptidase La compare
PFLU_RS02585 -1.4 -2.9 protease modulator HflC compare


Specific Phenotypes

For 18 genes in this experiment

For stress D,L-Malic Acid in Pseudomonas fluorescens SBW25-INTG

For stress D,L-Malic Acid across organisms