Experiment set14IT009 for Pseudomonas fluorescens SBW25-INTG

Compare to:

D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with Sodium chloride

200 most important genes:

  gene name fitness t score description  
PFLU_RS04150 -4.9 -8.1 DUF1043 family protein compare
PFLU_RS03970 -4.7 -3.3 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS01400 -4.7 -5.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS28385 -4.7 -8.4 homoserine O-acetyltransferase compare
PFLU_RS28645 -4.6 -12.6 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS15755 -4.5 -2.6 type II secretion system protein M compare
PFLU_RS03575 -4.5 -2.6 hypothetical protein compare
PFLU_RS23115 -4.4 -9.5 dicarboxylate/amino acid:cation symporter compare
PFLU_RS28535 -4.4 -10.2 dihydroxy-acid dehydratase compare
PFLU_RS04465 -4.3 -8.3 ATP phosphoribosyltransferase compare
PFLU_RS07940 -4.2 -6.5 malate dehydrogenase (quinone) compare
PFLU_RS27370 -4.2 -7.6 anthranilate phosphoribosyltransferase compare
PFLU_RS12945 -4.1 -2.9 hypothetical protein compare
PFLU_RS20955 -4.1 -2.1 DUF1028 domain-containing protein compare
PFLU_RS20510 -4.0 -9.0 O-succinylhomoserine sulfhydrylase compare
PFLU_RS02590 -4.0 -6.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS24025 -3.9 -8.8 quinolinate synthase NadA compare
PFLU_RS20565 -3.9 -6.0 3-isopropylmalate dehydrogenase compare
PFLU_RS02490 -3.9 -11.8 phosphoserine phosphatase SerB compare
PFLU_RS01900 -3.9 -2.7 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS25640 -3.9 -9.0 ketol-acid reductoisomerase compare
PFLU_RS08410 -3.9 -5.9 HTH-type transcriptional regulator CysB compare
PFLU_RS26535 -3.8 -8.2 thiamine phosphate synthase compare
PFLU_RS01895 -3.8 -6.9 phosphoribosyl-ATP diphosphatase compare
PFLU_RS28420 -3.8 -10.2 thiazole synthase compare
PFLU_RS03555 -3.8 -1.1 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS28165 -3.8 -7.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS05210 -3.8 -2.6 HU family DNA-binding protein compare
PFLU_RS29095 -3.8 -24.0 polyphosphate kinase 1 compare
PFLU_RS20575 -3.8 -5.1 3-isopropylmalate dehydratase small subunit compare
PFLU_RS20580 -3.8 -7.2 3-isopropylmalate dehydratase large subunit compare
PFLU_RS07650 -3.7 -10.4 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS04470 -3.7 -6.7 histidinol dehydrogenase compare
PFLU_RS28390 -3.7 -10.6 methionine biosynthesis protein MetW compare
PFLU_RS01605 -3.7 -5.0 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS29780 -3.7 -5.0 acyl-CoA thioesterase compare
PFLU_RS22030 -3.6 -4.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS30900 -3.6 -2.1 hypothetical protein compare
PFLU_RS01620 -3.6 -4.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS04220 -3.5 -2.4 FadR family transcriptional regulator compare
PFLU_RS27365 -3.5 -9.9 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS07230 -3.5 -6.8 RNA polymerase sigma factor RpoE compare
PFLU_RS06310 -3.5 -3.4 sigma E protease regulator RseP compare
PFLU_RS26210 -3.5 -16.2 carbon starvation protein A compare
PFLU_RS20540 -3.5 -7.5 phosphoribosylanthranilate isomerase compare
PFLU_RS07640 -3.5 -8.1 universal stress protein compare
PFLU_RS24765 -3.5 -18.4 2-isopropylmalate synthase compare
PFLU_RS26205 -3.5 -11.8 YbdD/YjiX family protein compare
PFLU_RS07255 -3.4 -5.2 sulfurtransferase TusA family protein compare
PFLU_RS14550 -3.4 -2.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS10430 -3.3 -3.2 peptidase compare
PFLU_RS00180 -3.3 -6.0 tryptophan synthase subunit beta compare
PFLU_RS26530 -3.3 -13.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS22105 -3.3 -3.9 cysteine synthase CysM compare
PFLU_RS19550 -3.3 -1.0 ABC transporter ATP-binding protein compare
PFLU_RS29760 -3.2 -10.6 phosphate ABC transporter permease PstA compare
PFLU_RS20970 -3.2 -1.4 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS08505 -3.1 -6.6 protease HtpX compare
PFLU_RS28655 -3.1 -9.2 HAD family hydrolase compare
PFLU_RS12975 -3.1 -2.1 DUF934 domain-containing protein compare
PFLU_RS29580 -3.1 -4.3 ABC transporter ATP-binding protein compare
PFLU_RS05630 -3.0 -1.8 amino acid ABC transporter ATP-binding protein compare
PFLU_RS00175 -3.0 -7.0 tryptophan synthase subunit alpha compare
PFLU_RS21060 -2.9 -5.2 TetR/AcrR family transcriptional regulator compare
PFLU_RS29490 -2.9 -6.8 ribonuclease PH compare
PFLU_RS08735 -2.9 -1.2 histidine phosphatase family protein compare
PFLU_RS01610 -2.9 -8.8 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS00190 -2.9 -2.5 DUF883 domain-containing protein compare
PFLU_RS30630 -2.9 -1.2 hypothetical protein compare
PFLU_RS01995 -2.9 -7.7 malate dehydrogenase compare
PFLU_RS28695 -2.9 -6.3 phosphoglycerate dehydrogenase compare
PFLU_RS03665 -2.9 -4.4 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS25360 -2.9 -6.6 glutamate 5-kinase compare
PFLU_RS25715 -2.8 -2.8 RNA polymerase-binding protein DksA compare
PFLU_RS23070 -2.8 -1.2 50S ribosomal protein L32 compare
PFLU_RS04315 -2.8 -1.9 rod shape-determining protein MreD compare
PFLU_RS07685 -2.8 -3.8 transcriptional repressor LexA compare
PFLU_RS03755 -2.8 -10.8 PDZ domain-containing protein compare
PFLU_RS12980 -2.8 -2.7 nitrite/sulfite reductase compare
PFLU_RS02430 -2.7 -13.3 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS23920 -2.7 -2.2 septation protein A compare
PFLU_RS19910 -2.7 -2.1 hypothetical protein compare
PFLU_RS25750 -2.7 -1.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS17815 -2.7 -2.3 response regulator compare
PFLU_RS12260 -2.7 -1.6 hypothetical protein compare
PFLU_RS13665 -2.7 -1.1 MarR family transcriptional regulator compare
PFLU_RS20515 -2.7 -1.9 amidophosphoribosyltransferase compare
PFLU_RS01765 -2.7 -7.7 histidine utilization repressor compare
PFLU_RS07970 -2.6 -12.3 LOG family protein compare
PFLU_RS29310 -2.6 -1.1 accessory factor UbiK family protein compare
PFLU_RS31290 -2.6 -1.5 EamA family transporter compare
PFLU_RS15910 -2.6 -1.5 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS29515 -2.5 -10.5 RidA family protein compare
PFLU_RS03240 -2.5 -11.4 copper-translocating P-type ATPase compare
PFLU_RS01625 -2.5 -1.7 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS02365 -2.5 -8.6 glycosyltransferase compare
PFLU_RS29360 -2.4 -1.8 cytochrome c5 family protein compare
PFLU_RS00415 -2.4 -1.7 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS26250 -2.4 -12.0 ferredoxin--NADP reductase compare
PFLU_RS29480 -2.4 -10.1 exodeoxyribonuclease III compare
PFLU_RS28915 -2.4 -11.3 glycine cleavage system aminomethyltransferase GcvT compare
PFLU_RS08165 -2.4 -1.6 acyl carrier protein compare
PFLU_RS27465 -2.4 -1.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS24720 -2.3 -7.6 trehalose operon repressor compare
PFLU_RS08840 -2.3 -11.0 ion transporter compare
PFLU_RS21935 -2.3 -13.4 sensor histidine kinase compare
PFLU_RS18505 -2.2 -3.1 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS18195 -2.2 -8.1 sugar-binding transcriptional regulator compare
PFLU_RS08185 -2.2 -4.5 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS00440 -2.2 -12.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS24710 -2.2 -6.8 alpha,alpha-phosphotrehalase compare
PFLU_RS25315 -2.2 -4.7 dihydroneopterin triphosphate 2'-epimerase compare
PFLU_RS24205 -2.2 -1.5 DNA binding protein compare
PFLU_RS21200 -2.2 -9.0 N-acetylglutaminylglutamine amidotransferase compare
PFLU_RS10290 -2.1 -4.5 glucose 1-dehydrogenase compare
PFLU_RS02370 -2.1 -7.7 glycosyltransferase compare
PFLU_RS06230 -2.1 -5.1 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
PFLU_RS30555 -2.1 -1.6 hypothetical protein compare
PFLU_RS01595 -2.1 -8.1 AsmA family protein compare
PFLU_RS22895 -2.1 -13.7 PLP-dependent aminotransferase family protein compare
PFLU_RS21995 -2.1 -3.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS07665 -2.1 -1.4 type I DNA topoisomerase compare
PFLU_RS13085 -2.1 -3.1 DUF1315 family protein compare
PFLU_RS09055 -2.1 -1.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS28690 -2.1 -9.2 FAD-binding oxidoreductase compare
PFLU_RS08615 -2.0 -2.0 YgdI/YgdR family lipoprotein compare
PFLU_RS21155 -2.0 -9.6 rhodanese-related sulfurtransferase compare
PFLU_RS23310 -2.0 -7.5 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS23730 -2.0 -10.9 MurR/RpiR family transcriptional regulator compare
PFLU_RS22015 -2.0 -8.0 cobalamin biosynthesis protein compare
PFLU_RS13475 -2.0 -10.1 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
PFLU_RS25305 -2.0 -6.6 dihydromonapterin reductase compare
PFLU_RS23240 -2.0 -4.2 magnesium transporter compare
PFLU_RS16410 -2.0 -12.1 glycogen synthase GlgA compare
PFLU_RS19175 -2.0 -6.0 trigger factor compare
PFLU_RS29910 -1.9 -8.4 SMI1/KNR4 family protein compare
PFLU_RS01960 -1.9 -1.3 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS10660 -1.9 -2.0 DUF1652 domain-containing protein compare
PFLU_RS13350 -1.9 -1.3 ParD-like family protein compare
PFLU_RS12125 -1.9 -5.6 hypothetical protein compare
PFLU_RS23295 -1.9 -6.0 N-succinylarginine dihydrolase compare
PFLU_RS29420 -1.9 -9.6 aldehyde dehydrogenase compare
PFLU_RS02625 -1.9 -8.2 ribonuclease R compare
PFLU_RS02215 -1.9 -1.8 hypothetical protein compare
PFLU_RS02355 -1.9 -4.6 GNAT family N-acetyltransferase compare
PFLU_RS05020 -1.9 -1.3 DUF1120 domain-containing protein compare
PFLU_RS06815 -1.9 -7.4 TetR family transcriptional regulator compare
PFLU_RS03400 -1.9 -2.0 hypothetical protein compare
PFLU_RS00245 -1.9 -6.2 YheV family putative metal-binding protein compare
PFLU_RS09720 -1.8 -1.3 single-stranded DNA-binding protein compare
PFLU_RS27300 -1.8 -11.3 peptidoglycan DD-metalloendopeptidase family protein compare
PFLU_RS01285 -1.8 -1.2 HAMP domain-containing protein compare
PFLU_RS17265 -1.8 -1.8 hypothetical protein compare
PFLU_RS22005 -1.8 -8.7 cobyric acid synthase compare
PFLU_RS24590 -1.8 -2.8 cytochrome c assembly protein compare
PFLU_RS27690 -1.8 -1.3 response regulator compare
PFLU_RS05910 -1.8 -1.7 response regulator transcription factor compare
PFLU_RS12580 -1.8 -6.7 MurR/RpiR family transcriptional regulator compare
PFLU_RS30525 -1.8 -6.4 SDR family oxidoreductase compare
PFLU_RS21260 -1.8 -4.8 DUF3509 domain-containing protein compare
PFLU_RS06555 -1.8 -7.3 OmpA family protein compare
PFLU_RS12800 -1.8 -1.3 amino acid ABC transporter ATP-binding protein compare
PFLU_RS24455 -1.8 -3.4 membrane protein FxsA compare
PFLU_RS04945 -1.8 -2.7 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS08375 -1.8 -8.5 N-acetyltransferase compare
PFLU_RS16425 -1.8 -8.3 malto-oligosyltrehalose synthase compare
PFLU_RS24785 -1.8 -7.3 outer membrane protein assembly factor BamB compare
PFLU_RS29065 -1.8 -0.9 amino acid ABC transporter ATP-binding protein compare
PFLU_RS10295 -1.7 -4.3 HAD-IA family hydrolase compare
PFLU_RS07655 -1.7 -3.2 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS08765 -1.7 -3.2 phosphonate C-P lyase system protein PhnH compare
PFLU_RS04015 -1.7 -2.0 1-phosphofructokinase compare
PFLU_RS13365 -1.7 -1.3 hypothetical protein compare
PFLU_RS25940 -1.7 -10.1 FCD domain-containing protein compare
PFLU_RS16435 -1.7 -8.3 glycogen debranching protein GlgX compare
PFLU_RS15310 -1.7 -1.8 YgdI/YgdR family lipoprotein compare
PFLU_RS00065 -1.7 -7.5 lysophospholipid acyltransferase compare
PFLU_RS22095 -1.7 -10.0 GTP diphosphokinase compare
PFLU_RS15990 -1.7 -1.7 SDR family oxidoreductase compare
PFLU_RS26745 -1.7 -6.9 aldehyde dehydrogenase compare
PFLU_RS26490 -1.7 -2.5 cation diffusion facilitator family transporter compare
PFLU_RS01965 -1.7 -1.1 ATP-dependent protease subunit HslV compare
PFLU_RS16935 -1.7 -1.7 CoA ester lyase compare
PFLU_RS23475 -1.7 -2.3 peptidase M4 compare
PFLU_RS13895 -1.7 -0.9 helix-turn-helix transcriptional regulator compare
PFLU_RS23065 -1.7 -6.7 phosphate acyltransferase PlsX compare
PFLU_RS30520 -1.7 -4.7 ketoacyl-ACP synthase III compare
PFLU_RS26835 -1.7 -2.5 exodeoxyribonuclease VII small subunit compare
PFLU_RS08190 -1.7 -10.0 polysaccharide biosynthesis protein compare
PFLU_RS22740 -1.6 -2.2 phosphoadenylyl-sulfate reductase compare
PFLU_RS23305 -1.6 -7.2 arginine N-succinyltransferase compare
PFLU_RS22025 -1.6 -8.8 cobyrinate a,c-diamide synthase compare
PFLU_RS23380 -1.6 -1.1 HAD-IB family hydrolase compare
PFLU_RS09980 -1.6 -9.3 peptidase S41 compare
PFLU_RS05690 -1.6 -1.1 Grx4 family monothiol glutaredoxin compare
PFLU_RS09005 -1.6 -8.4 molecular chaperone HtpG compare
PFLU_RS15010 -1.6 -4.0 hypothetical protein compare
PFLU_RS22045 -1.6 -5.2 peptidase P60 compare
PFLU_RS02965 -1.6 -6.7 cobalt-precorrin-6A reductase compare
PFLU_RS00195 -1.6 -1.8 dodecin domain-containing protein compare


Specific Phenotypes

For 28 genes in this experiment

For stress D,L-Malic Acid in Pseudomonas fluorescens SBW25-INTG

For stress D,L-Malic Acid across organisms