Experiment set14IT007 for Burkholderia phytofirmans PsJN

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS02595 +2.0 2.2 sulfurtransferase compare
BPHYT_RS25770 +1.8 2.3 hypothetical protein compare
BPHYT_RS36035 +1.8 2.9 hypothetical protein compare
BPHYT_RS20725 +1.8 2.0 histidine kinase compare
BPHYT_RS17030 +1.7 2.5 lipid hydroperoxide peroxidase compare
BPHYT_RS07540 +1.7 2.0 hypothetical protein compare
BPHYT_RS02880 +1.7 1.0 ATP-dependent protease compare
BPHYT_RS02755 +1.6 1.9 cyd operon protein YbgT compare
BPHYT_RS27890 +1.6 1.4 hypothetical protein compare
BPHYT_RS35215 +1.6 1.8 dehydrogenase compare
BPHYT_RS25780 +1.5 1.4 DeoR faimly transcriptional regulator compare
BPHYT_RS28575 +1.5 1.8 transcriptional regulator compare
BPHYT_RS10850 +1.5 2.3 LysR family transcriptional regulator compare
BPHYT_RS02005 +1.5 2.5 diguanylate phosphodiesterase compare
BPHYT_RS23270 +1.4 1.7 enoyl-CoA hydratase compare
BPHYT_RS04095 +1.4 1.5 SAM-dependent methyltransferase PhcB compare
BPHYT_RS33355 +1.4 2.4 oxalyl-CoA decarboxylase compare
BPHYT_RS14670 +1.4 1.7 hypothetical protein compare
BPHYT_RS24315 +1.4 1.2 phosphoribosyltransferase compare
BPHYT_RS05675 +1.4 5.7 hypothetical protein compare
BPHYT_RS02860 +1.3 1.3 membrane protein compare
BPHYT_RS02135 +1.3 2.7 glyoxylate reductase compare
BPHYT_RS27370 +1.3 2.8 CoA transferase compare
BPHYT_RS28675 +1.3 1.5 hypothetical protein compare
BPHYT_RS23895 +1.3 2.8 hypothetical protein compare
BPHYT_RS21805 +1.3 2.7 transcriptional regulator compare
BPHYT_RS33125 +1.3 1.5 hypothetical protein compare
BPHYT_RS36590 +1.3 3.1 hypothetical protein compare
BPHYT_RS36175 +1.3 2.5 hypothetical protein compare
BPHYT_RS11005 +1.2 2.2 chromate transporter compare
BPHYT_RS29065 +1.2 2.0 hypothetical protein compare
BPHYT_RS26465 +1.2 1.6 metallophosphoesterase compare
BPHYT_RS23385 +1.2 1.9 group 1 glycosyl transferase compare
BPHYT_RS11745 +1.2 1.2 (2Fe-2S)-binding protein compare
BPHYT_RS18875 +1.2 5.7 flagellar basal body rod protein FlgF compare
BPHYT_RS18835 +1.2 1.4 flagellar biosynthesis protein FliR compare
BPHYT_RS18590 +1.2 1.2 hypothetical protein compare
BPHYT_RS09860 +1.2 1.1 pilus assembly protein PilP compare
BPHYT_RS13160 +1.2 1.5 membrane protein compare
BPHYT_RS28190 +1.2 1.4 porin compare
BPHYT_RS22860 +1.2 1.1 chemotaxis protein CheY compare
BPHYT_RS18885 +1.2 4.9 flagellar basal body rod modification protein FlgD compare
BPHYT_RS36400 +1.2 1.1 hypothetical protein compare
BPHYT_RS34100 +1.2 1.9 spermidine/putrescine ABC transporter ATP-binding protein compare
BPHYT_RS16195 +1.2 2.8 carbon monoxide dehydrogenase subunit G compare
BPHYT_RS13125 +1.2 2.6 ABC transporter ATP-binding protein compare
BPHYT_RS09735 +1.1 2.3 glycosyl transferase compare
BPHYT_RS09280 +1.1 1.4 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS10645 +1.1 1.4 cyanate hydratase compare
BPHYT_RS35485 +1.1 2.9 hypothetical protein compare
BPHYT_RS21645 +1.1 3.4 LysR family transcriptional regulator compare
BPHYT_RS05330 +1.1 0.8 phosphohydrolase compare
BPHYT_RS18825 +1.1 3.2 flagellar biosynthesis protein FliP compare
BPHYT_RS01790 +1.1 8.1 LuxR family transcriptional regulator compare
BPHYT_RS10205 +1.1 4.2 D-lactate dehydrogenase compare
BPHYT_RS23210 +1.1 1.2 MFS transporter compare
BPHYT_RS09385 +1.1 1.1 FAD-dependent oxidoreductase compare
BPHYT_RS02245 +1.1 2.8 MerR family transcriptional regulator compare
BPHYT_RS22815 +1.1 1.8 TonB-denpendent receptor compare
BPHYT_RS07380 +1.1 2.5 membrane protein compare
BPHYT_RS23650 +1.1 1.1 hypothetical protein compare
BPHYT_RS35945 +1.1 1.9 response regulator receiver compare
BPHYT_RS13170 +1.1 3.0 ATPase compare
BPHYT_RS35735 +1.1 1.0 nitroreductase compare
BPHYT_RS35120 +1.1 1.9 hypothetical protein compare
BPHYT_RS23990 +1.1 1.5 N-hydroxyarylamine O-acetyltransferase compare
BPHYT_RS35185 +1.1 2.5 DOPA 4,5-dioxygenase compare
BPHYT_RS09000 +1.1 1.3 competence protein ComE compare
BPHYT_RS33515 +1.1 4.9 porin compare
BPHYT_RS07145 +1.1 1.5 DNA-binding protein compare
BPHYT_RS26325 +1.1 3.1 ATPase compare
BPHYT_RS05290 +1.1 1.4 hypothetical protein compare
BPHYT_RS09755 +1.1 1.7 glycosyl transferase family 1 compare
BPHYT_RS28620 +1.1 1.9 enoyl-CoA hydratase compare
BPHYT_RS03025 +1.1 2.8 methyl-accepting chemotaxis protein compare
BPHYT_RS26055 +1.1 3.2 ABC transporter substrate-binding protein compare
BPHYT_RS18870 +1.1 5.4 flagellar basal body rod protein FlgG compare
BPHYT_RS13515 +1.0 2.8 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS13815 +1.0 2.3 hypothetical protein compare
BPHYT_RS35105 +1.0 1.9 succinylglutamate desuccinylase/aspartoacylase compare
BPHYT_RS30610 +1.0 1.9 major facilitator transporter compare
BPHYT_RS36320 +1.0 2.6 type IV secretion system family protein compare
BPHYT_RS00960 +1.0 1.3 recombinase RecA compare
BPHYT_RS07925 +1.0 1.9 glutamine amidotransferase compare
BPHYT_RS05300 +1.0 2.8 polyketide cyclase compare
BPHYT_RS35725 +1.0 4.0 hypothetical protein compare
BPHYT_RS20895 +1.0 3.3 ABC transporter compare
BPHYT_RS09825 +1.0 1.5 Fe-S protein compare
BPHYT_RS27295 +1.0 0.7 hypothetical protein compare
BPHYT_RS20115 +1.0 2.7 transcriptional regulator compare
BPHYT_RS31020 +1.0 1.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS08665 +1.0 1.0 hypothetical protein compare
BPHYT_RS02365 +1.0 1.2 hypothetical protein compare
BPHYT_RS24415 +1.0 4.9 type VI secretion protein compare
BPHYT_RS03655 +1.0 0.9 membrane protein compare
BPHYT_RS18795 +1.0 3.5 flagellar export protein FliJ compare
BPHYT_RS08490 +1.0 2.2 Crp/Fnr family transcriptional regulator compare
BPHYT_RS32750 +1.0 1.4 lipoprotein compare
BPHYT_RS22820 +1.0 1.1 hydrolase compare
BPHYT_RS28285 +1.0 1.7 MFS transporter compare
BPHYT_RS21465 +1.0 2.2 TetR family transcriptional regulator compare
BPHYT_RS20120 +1.0 2.5 porin compare
BPHYT_RS13295 +1.0 2.2 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS27345 +1.0 1.6 aldehyde dehydrogenase compare
BPHYT_RS21675 +1.0 2.0 FAD-dependent oxidoreductase compare
BPHYT_RS22940 +1.0 1.1 pilus assembly protein TadE compare
BPHYT_RS07190 +1.0 1.9 acetyltransferase compare
BPHYT_RS32815 +1.0 1.7 sugar ABC transporter compare
BPHYT_RS36055 +0.9 1.9 hypothetical protein compare
BPHYT_RS04430 +0.9 1.1 amino acid ABC transporter ATPase compare
BPHYT_RS27625 +0.9 1.5 transport-associated protein compare
BPHYT_RS25800 +0.9 1.1 sugar ABC transporter permease compare
BPHYT_RS27065 +0.9 1.3 hypothetical protein compare
BPHYT_RS25545 +0.9 3.2 hypothetical protein compare
BPHYT_RS20070 +0.9 1.8 hypothetical protein compare
BPHYT_RS24060 +0.9 2.3 FAD-linked oxidase compare
BPHYT_RS17165 +0.9 1.4 cell division protein ZapD compare
BPHYT_RS18855 +0.9 4.3 flagellar rod assembly protein FlgJ compare
BPHYT_RS18945 +0.9 5.5 flagellar biosynthesis protein FlhB compare
BPHYT_RS11765 +0.9 0.7 polyamine ABC transporter permease compare
BPHYT_RS07140 +0.9 2.5 hypothetical protein compare
BPHYT_RS29840 +0.9 1.0 polysaccharide biosynthesis protein compare
BPHYT_RS11170 +0.9 1.2 hypothetical protein compare
BPHYT_RS16445 +0.9 1.5 RNA helicase compare
BPHYT_RS35385 +0.9 1.3 GntR family transcriptional regulator compare
BPHYT_RS20280 +0.9 2.1 hypothetical protein compare
BPHYT_RS23275 +0.9 2.3 3-methylcrotonyl-CoA carboxylase subunit alpha compare
BPHYT_RS10135 +0.9 0.9 hypothetical protein compare
BPHYT_RS18890 +0.9 4.7 flagellar basal body rod protein FlgC compare
BPHYT_RS17450 +0.9 4.3 glycerophosphodiester phosphodiesterase compare
BPHYT_RS18880 +0.9 6.1 flagellar hook protein FlgE compare
BPHYT_RS14605 +0.9 2.6 sodium transporter compare
BPHYT_RS23350 +0.9 1.3 NAD-dependent epimerase/dehydratase compare
BPHYT_RS16590 +0.9 3.1 Fis family transcriptional regulator compare
BPHYT_RS34040 +0.9 2.7 hypothetical protein compare
BPHYT_RS20065 +0.9 2.3 hypothetical protein compare
BPHYT_RS34665 +0.9 1.6 hypothetical protein compare
BPHYT_RS02410 +0.9 2.5 alpha/beta hydrolase compare
BPHYT_RS32905 +0.9 2.2 FAD-linked oxidase compare
BPHYT_RS28955 +0.9 1.7 hypothetical protein compare
BPHYT_RS04525 +0.9 2.5 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS10705 +0.9 2.7 MFS transporter compare
BPHYT_RS31690 +0.9 2.4 hypothetical protein compare
BPHYT_RS14070 +0.9 1.4 hypothetical protein compare
BPHYT_RS18830 +0.9 5.2 flagellar biosynthesis protein FliQ compare
BPHYT_RS25230 +0.9 2.1 formyltetrahydrofolate deformylase compare
BPHYT_RS09040 +0.9 1.5 MerR family transcriptional regulator compare
BPHYT_RS09850 +0.9 1.0 molybdopterin oxidoreductase compare
BPHYT_RS08415 +0.9 1.6 hypothetical protein compare
BPHYT_RS25625 +0.9 2.7 glutathione S-transferase compare
BPHYT_RS02185 +0.9 3.8 hypothetical protein compare
BPHYT_RS13885 +0.9 0.9 myo-inositol 2-dehydrogenase compare
BPHYT_RS18610 +0.9 2.2 lytic transglycosylase compare
BPHYT_RS01795 +0.9 5.5 histidine kinase compare
BPHYT_RS07095 +0.9 1.5 LysR family transcriptional regulator compare
BPHYT_RS35480 +0.9 1.5 salicylyl-CoA 5-hydroxylase compare
BPHYT_RS08525 +0.9 1.0 SAM-dependent methyltransferase compare
BPHYT_RS16290 +0.9 0.9 hypothetical protein compare
BPHYT_RS00940 +0.9 1.2 transposase compare
BPHYT_RS20055 +0.9 2.9 hypothetical protein compare
BPHYT_RS07375 +0.9 2.8 membrane protein compare
BPHYT_RS32495 +0.9 1.8 ABC transporter compare
BPHYT_RS31970 +0.9 1.7 cupin compare
BPHYT_RS05420 +0.9 1.3 glutathione S-transferase compare
BPHYT_RS33135 +0.9 1.5 LysR family transcriptional regulator compare
BPHYT_RS25065 +0.9 1.4 glycine/betaine ABC transporter ATPase compare
BPHYT_RS11685 +0.9 1.0 phasin family protein compare
BPHYT_RS25240 +0.9 3.3 choline-sulfatase compare
BPHYT_RS34580 +0.9 2.6 DNA alkylation repair protein compare
BPHYT_RS01435 +0.8 6.3 LysR family transcriptional regulator compare
BPHYT_RS29500 +0.8 1.1 hypothetical protein compare
BPHYT_RS19025 +0.8 4.8 transcriptional regulator compare
BPHYT_RS24590 +0.8 0.8 DeoR faimly transcriptional regulator compare
BPHYT_RS10590 +0.8 2.2 hypothetical protein compare
BPHYT_RS35865 +0.8 2.4 hypothetical protein compare
BPHYT_RS09910 +0.8 1.7 tyramine oxidase compare
BPHYT_RS04215 +0.8 1.7 hypothetical protein compare
BPHYT_RS27950 +0.8 1.4 dihydroxyacetone kinase compare
BPHYT_RS18900 +0.8 6.0 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS24930 +0.8 2.5 cytochrome C oxidase subunit III compare
BPHYT_RS32930 +0.8 2.2 NADPH:quinone reductase and related Zn-dependent oxidoreductase-like protein compare
BPHYT_RS23940 +0.8 1.3 GntR family transcriptional regulator compare
BPHYT_RS28255 +0.8 1.0 hypothetical protein compare
BPHYT_RS30855 +0.8 2.5 sugar ABC transporter substrate-binding protein compare
BPHYT_RS20135 +0.8 3.1 UDP-N-acetyl-D-mannosamine transferase compare
BPHYT_RS36230 +0.8 1.5 hypothetical protein compare
BPHYT_RS01085 +0.8 2.7 transposase IS116/IS110/IS902 family protein compare
BPHYT_RS18810 +0.8 4.6 flagellar motor switch protein FliM compare
BPHYT_RS34095 +0.8 2.2 spermidine/putrescine ABC transporter substrate-binding protein compare
BPHYT_RS10950 +0.8 1.5 transcriptional regulator compare
BPHYT_RS25210 +0.8 0.9 drug:proton antiporter compare
BPHYT_RS05390 +0.8 1.6 isochorismatase compare
BPHYT_RS18935 +0.8 2.9 flagellar biosynthesis regulator FlhF compare
BPHYT_RS09765 +0.8 1.4 G-D-S-L family lipolytic protein compare
BPHYT_RS27305 +0.8 0.9 hypothetical protein compare
BPHYT_RS20995 +0.8 2.3 NUDIX hydrolase compare
BPHYT_RS14370 +0.8 1.6 ribonuclease III compare
BPHYT_RS05325 +0.8 2.3 amidohydrolase compare
BPHYT_RS23880 +0.8 1.6 sugar ABC transporter permease compare
BPHYT_RS07770 +0.8 1.5 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered in Burkholderia phytofirmans PsJN

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered across organisms