Experiment set14IT007 for Burkholderia phytofirmans PsJN
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Group: supernatantMedia: + supernatant from Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered (1 X)
Culturing: BFirm_ML3a, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
By: Cat_Manuel_Trenton on 3/3/21
Specific Phenotypes
For 6 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Cysteine Biosynthesis | 1 |
| Glutathione: Biosynthesis and gamma-glutamyl cycle | 1 |
| Multidrug Resistance Efflux Pumps | 1 |
| Multidrug efflux pump in Campylobacter jejuni (CmeABC operon) | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Phenylalanine, tyrosine and tryptophan biosynthesis
- Glutathione metabolism
- Sulfur metabolism
- Biosynthesis of phenylpropanoids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| glutathione biosynthesis | 2 | 2 | 1 |
| homoglutathione biosynthesis | 2 | 1 | 1 |
| assimilatory sulfate reduction III | 3 | 3 | 1 |
| ophthalmate biosynthesis | 3 | 2 | 1 |
| assimilatory sulfate reduction I | 4 | 4 | 1 |
| NAD salvage pathway II (PNC IV cycle) | 5 | 5 | 1 |
| L-tryptophan biosynthesis | 6 | 6 | 1 |
| γ-glutamyl cycle | 6 | 5 | 1 |
| ergothioneine biosynthesis I (bacteria) | 7 | 4 | 1 |
| superpathway of sulfate assimilation and cysteine biosynthesis | 9 | 9 | 1 |
| superpathway of sulfur amino acid biosynthesis (Saccharomyces cerevisiae) | 10 | 7 | 1 |
| superpathway of L-methionine biosynthesis (by sulfhydrylation) | 12 | 12 | 1 |
| superpathway of L-tryptophan biosynthesis | 13 | 13 | 1 |
| superpathway of aromatic amino acid biosynthesis | 18 | 18 | 1 |
| superpathway of chorismate metabolism | 59 | 42 | 1 |