Experiment set14IT006 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS00865 +2.5 6.3 DNA-binding transcriptional regulator OxyR compare
BWI76_RS00140 +2.2 2.4 phosphate transport system regulator PhoU compare
BWI76_RS01585 +2.1 9.1 transcriptional regulator compare
BWI76_RS20995 +2.1 6.4 RNA degradosome polyphosphate kinase compare
BWI76_RS13215 +1.9 2.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS12790 +1.9 1.4 lactate dehydrogenase compare
BWI76_RS21945 +1.9 3.2 LysR family transcriptional regulator compare
BWI76_RS23505 +1.8 12.0 ferrous iron transporter B compare
BWI76_RS07725 +1.7 1.6 iron-enterobactin transporter permease compare
BWI76_RS06540 +1.7 3.1 DNA-binding protein HU-beta compare
BWI76_RS05810 +1.7 1.6 hypothetical protein compare
BWI76_RS07730 +1.7 0.8 iron-enterobactin transporter membrane protein compare
BWI76_RS06325 +1.7 1.7 hypothetical protein compare
BWI76_RS21485 +1.7 6.0 DUF4154 domain-containing protein compare
BWI76_RS13805 +1.7 4.0 inorganic diphosphatase compare
BWI76_RS14775 +1.6 1.8 creatinine amidohydrolase compare
BWI76_RS25545 +1.6 2.8 hypothetical protein compare
BWI76_RS23250 +1.6 2.9 hypothetical protein compare
BWI76_RS13330 +1.5 1.6 tellurite resistance methyltransferase TehB compare
BWI76_RS23470 +1.5 9.2 hypothetical protein compare
BWI76_RS08885 +1.5 3.3 transcriptional regulator compare
BWI76_RS13435 +1.5 1.3 hypothetical protein compare
BWI76_RS20795 +1.5 1.6 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS24885 +1.5 0.9 PTS galactitol transporter subunit IIB compare
BWI76_RS09710 +1.5 2.3 transketolase compare
BWI76_RS08405 +1.5 2.6 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS23030 +1.5 1.2 cobalamin biosynthesis protein CbiM compare
BWI76_RS23895 +1.4 1.0 Xaa-Pro aminopeptidase compare
BWI76_RS04055 +1.4 10.6 GGDEF domain-containing protein compare
BWI76_RS06400 +1.4 1.2 oxidative-stress-resistance chaperone compare
BWI76_RS24070 +1.4 3.4 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
BWI76_RS03045 +1.4 1.6 hypothetical protein compare
BWI76_RS03665 +1.4 2.2 ABC transporter ATP-binding protein compare
BWI76_RS16795 +1.4 2.3 amino acid ABC transporter ATPase compare
BWI76_RS03515 +1.3 2.1 hypothetical protein compare
BWI76_RS16760 +1.3 2.3 lipase compare
BWI76_RS14970 +1.3 1.5 pyrroline-5-carboxylate reductase compare
BWI76_RS03595 +1.3 1.8 ethanolamine utilization protein EutM compare
BWI76_RS04360 +1.3 6.1 ribonucleoside hydrolase RihC compare
BWI76_RS05235 +1.3 0.9 hypothetical protein compare
BWI76_RS06595 +1.3 2.1 hypothetical protein compare
BWI76_RS16220 +1.3 1.5 hypothetical protein compare
BWI76_RS19935 +1.3 1.5 hypothetical protein compare
BWI76_RS17190 +1.3 1.3 TonB system transport protein TonB compare
BWI76_RS15300 +1.3 2.4 multiple antibiotic resistance regulatory periplasmic protein MarB compare
BWI76_RS15975 +1.3 0.8 hypothetical protein compare
BWI76_RS15090 +1.3 2.4 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
BWI76_RS14930 +1.3 1.9 hypothetical protein compare
BWI76_RS09610 +1.3 2.7 ATP-dependent Clp protease adaptor ClpS compare
BWI76_RS12870 +1.3 1.6 putative phytanoyl-CoA dioxygenase compare
BWI76_RS17665 +1.3 2.8 proteasome-type protease compare
BWI76_RS21390 +1.3 2.7 thiol disulfide reductase thioredoxin compare
BWI76_RS19490 +1.3 2.5 binding-protein-dependent transport system inner membrane protein compare
BWI76_RS04915 +1.3 3.0 hypothetical protein compare
BWI76_RS00590 +1.2 1.5 hypothetical protein compare
BWI76_RS04060 +1.2 1.5 hypothetical protein compare
BWI76_RS05950 +1.2 1.4 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS06745 +1.2 2.0 N-acetyltransferase GCN5 compare
BWI76_RS20040 +1.2 1.8 tricarboxylic transport membrane protein compare
BWI76_RS06190 +1.2 2.2 hypothetical protein compare
BWI76_RS21490 +1.2 5.4 GGDEF domain-containing protein compare
BWI76_RS03025 +1.2 1.5 N-acetyltransferase compare
BWI76_RS01650 +1.2 1.7 acetyltransferase compare
BWI76_RS12825 +1.2 2.2 hypothetical protein compare
BWI76_RS15435 +1.2 1.0 hypothetical protein compare
BWI76_RS07920 +1.2 2.3 methionine aminotransferase compare
BWI76_RS26805 +1.2 3.6 cellulose biosynthesis protein BcsF compare
BWI76_RS15330 +1.2 2.8 urea ABC transporter permease subunit UrtC compare
BWI76_RS12665 +1.2 1.5 hypothetical protein compare
BWI76_RS19340 +1.2 4.0 xylulokinase compare
BWI76_RS22425 +1.2 3.1 metal ABC transporter substrate-binding protein compare
BWI76_RS08250 +1.2 3.3 tricarballylate utilization protein B compare
BWI76_RS11350 +1.2 2.2 DeoR family transcriptional regulator compare
BWI76_RS27940 +1.2 1.7 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BWI76_RS11735 +1.2 2.2 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
BWI76_RS10640 +1.2 2.2 AraC family transcriptional regulator compare
BWI76_RS01675 +1.2 2.2 putative cytoplasmic protein compare
BWI76_RS06120 +1.2 1.9 membrane protein compare
BWI76_RS20940 +1.2 2.7 uracil/xanthine transporter compare
BWI76_RS27455 +1.1 1.5 DUF805 domain-containing protein compare
BWI76_RS13090 +1.1 2.0 phenylacetate-CoA oxygenase subunit PaaA compare
BWI76_RS08585 +1.1 2.3 nicotinamide riboside transporter PnuC compare
BWI76_RS08615 +1.1 3.1 galactokinase compare
BWI76_RS24035 +1.1 1.6 hypothetical protein compare
BWI76_RS24110 +1.1 1.1 YggU family protein compare
BWI76_RS00375 +1.1 2.2 hypothetical protein compare
BWI76_RS19330 +1.1 0.6 HAD family hydrolase compare
BWI76_RS04095 +1.1 2.2 dUMP phosphatase compare
BWI76_RS19360 +1.1 1.5 glucose dehydrogenase compare
BWI76_RS27395 +1.1 3.1 hypothetical protein compare
BWI76_RS03295 +1.1 0.9 transposase compare
BWI76_RS21715 +1.1 1.6 transcriptional regulator compare
BWI76_RS14615 +1.1 1.3 hypothetical protein compare
BWI76_RS18335 +1.1 5.0 DNA-binding response regulator compare
BWI76_RS11820 +1.1 1.1 short-chain dehydrogenase/reductase SDR compare
BWI76_RS24975 +1.0 3.2 U32 family peptidase compare
BWI76_RS06880 +1.0 2.4 biopolymer transport protein ExbD/TolR compare
BWI76_RS06225 +1.0 3.1 exonuclease sbcCD subunit D compare
BWI76_RS11825 +1.0 2.5 LysR family transcriptional regulator compare
BWI76_RS17615 +1.0 2.2 RNA pseudouridine synthase compare
BWI76_RS11030 +1.0 2.5 MFS transporter compare
BWI76_RS07350 +1.0 3.2 alcohol dehydrogenase compare
BWI76_RS04175 +1.0 2.1 energy-dependent translational throttle protein EttA compare
BWI76_RS07165 +1.0 2.0 hypothetical protein compare
BWI76_RS14170 +1.0 1.4 hypothetical protein compare
BWI76_RS06335 +1.0 1.9 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS04995 +1.0 3.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
BWI76_RS11675 +1.0 2.0 arginine N-succinyltransferase compare
BWI76_RS11750 +1.0 1.0 chitooligosaccharide deacetylase compare
BWI76_RS23050 +1.0 1.7 cobalt-precorrin-3B C(17)-methyltransferase compare
BWI76_RS26635 +1.0 1.9 hypothetical protein compare
BWI76_RS23535 +1.0 2.0 hypothetical protein compare
BWI76_RS13980 +1.0 1.3 hypothetical protein compare
BWI76_RS20960 +1.0 3.2 ROK family protein compare
BWI76_RS20915 +1.0 2.6 peroxiredoxin compare
BWI76_RS11515 +1.0 1.0 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS07895 +1.0 2.9 sugar ABC transporter ATPase compare
BWI76_RS05915 +1.0 1.9 helix-turn-helix transcriptional regulator compare
BWI76_RS26115 +1.0 2.0 hypothetical protein compare
BWI76_RS14390 +1.0 0.9 hypothetical protein compare
BWI76_RS23495 +1.0 3.7 hypothetical protein compare
BWI76_RS09520 +1.0 1.2 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS16360 +1.0 0.7 electron transport complex subunit RsxB compare
BWI76_RS26280 +1.0 1.4 hypothetical protein compare
BWI76_RS16735 +1.0 2.2 cold-shock protein compare
BWI76_RS01000 +1.0 2.8 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS13445 +1.0 1.0 alpha/beta hydrolase compare
BWI76_RS21130 +1.0 1.3 Fe-S assembly protein IscX compare
BWI76_RS14730 +1.0 2.0 4-oxalocrotonate tautomerase compare
BWI76_RS02180 +1.0 0.9 hypothetical protein compare
BWI76_RS16075 +1.0 1.1 oxidoreductase compare
BWI76_RS10400 +1.0 1.7 hypothetical protein compare
BWI76_RS06440 +1.0 1.8 AP endonuclease compare
BWI76_RS12975 +1.0 1.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS18065 +1.0 1.0 DNA polymerase III subunit theta compare
BWI76_RS11185 +1.0 1.9 ligand-gated channel protein compare
BWI76_RS13890 +1.0 1.8 LysR family transcriptional regulator compare
BWI76_RS11915 +1.0 3.8 protease SohB compare
BWI76_RS16460 +1.0 3.2 oxidoreductase compare
BWI76_RS13245 +1.0 1.0 DNA-damage-inducible protein I compare
BWI76_RS24080 +0.9 1.3 DUF179 domain-containing protein compare
BWI76_RS11665 +0.9 1.4 exodeoxyribonuclease III compare
BWI76_RS11605 +0.9 2.7 DNA topoisomerase III compare
BWI76_RS25980 +0.9 1.2 hypothetical protein compare
BWI76_RS11335 +0.9 1.0 tautomerase compare
BWI76_RS16080 +0.9 2.4 LysR family transcriptional regulator compare
BWI76_RS13450 +0.9 2.1 acyl-CoA thioesterase compare
BWI76_RS14075 +0.9 0.9 TetR family transcriptional regulator compare
BWI76_RS15080 +0.9 6.0 hypothetical protein compare
BWI76_RS18430 +0.9 1.1 hypothetical protein compare
BWI76_RS16240 +0.9 1.2 anti-adapter protein IraM compare
BWI76_RS01285 +0.9 2.1 amino acid ABC transporter substrate-binding protein compare
BWI76_RS20220 +0.9 3.5 sugar phosphatase compare
BWI76_RS09960 +0.9 1.5 Lon protease compare
BWI76_RS22880 +0.9 2.2 L-serine ammonia-lyase compare
BWI76_RS02880 +0.9 2.7 membrane protein compare
BWI76_RS16800 +0.9 1.5 amino acid ABC transporter permease compare
BWI76_RS13420 +0.9 0.9 ABC transporter permease compare
BWI76_RS16205 +0.9 2.6 NAD(P) transhydrogenase subunit alpha compare
BWI76_RS11155 +0.9 0.9 penicillin-binding protein activator LpoB compare
BWI76_RS23325 +0.9 1.9 hypothetical protein compare
BWI76_RS23555 +0.9 1.6 type 1 major fimbrial subunit precursor compare
BWI76_RS05640 +0.9 1.3 GntR family transcriptional regulator compare
BWI76_RS15185 +0.9 2.3 N-acetyltransferase compare
BWI76_RS23465 +0.9 2.5 oxidoreductase compare
BWI76_RS04275 +0.9 3.2 molybdopterin adenylyltransferase compare
BWI76_RS13660 +0.9 1.9 nitrate reductase subunit beta compare
BWI76_RS04560 +0.9 0.7 holo-ACP synthase CitX compare
BWI76_RS15125 +0.9 2.0 acetyltransferase compare
BWI76_RS19525 +0.9 1.4 D-alanyl-D-alanine endopeptidase compare
BWI76_RS23705 +0.9 1.1 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS07255 +0.9 1.0 hypothetical protein compare
BWI76_RS20330 +0.9 2.6 histidine/lysine/arginine/ornithine ABC transporter permease HisQ compare
BWI76_RS16675 +0.8 1.1 ABC transporter compare
BWI76_RS21495 +0.8 2.0 outer membrane lipoprotein compare
BWI76_RS12580 +0.8 1.4 oxidoreductase compare
BWI76_RS11630 +0.8 2.6 sulfurtransferase compare
BWI76_RS25485 +0.8 1.0 septum formation protein Maf compare
BWI76_RS10500 +0.8 1.1 flavoprotein monooxygenase compare
BWI76_RS11775 +0.8 1.4 2-deoxy-D-gluconate 3-dehydrogenase compare
BWI76_RS20890 +0.8 1.8 neutral zinc metallopeptidase compare
BWI76_RS06080 +0.8 1.4 taurine dioxygenase compare
BWI76_RS27670 +0.8 1.7 LysR family transcriptional regulator compare
BWI76_RS21010 +0.8 1.5 Negative regulator of nickel and cobalt uptake (YfgG) (from data) compare
BWI76_RS04495 +0.8 3.3 glutathione-regulated potassium-efflux system protein KefC compare
BWI76_RS17910 +0.8 2.4 hypothetical protein compare
BWI76_RS13320 +0.8 1.3 putative LpxA-like enzyme compare
BWI76_RS10385 +0.8 2.3 MmgE/PrpD family protein compare
BWI76_RS14835 +0.8 0.8 hypothetical protein compare
BWI76_RS12910 +0.8 1.4 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
BWI76_RS19240 +0.8 1.0 ABC transporter substrate-binding protein compare
BWI76_RS15265 +0.8 2.3 hypothetical protein compare
BWI76_RS17830 +0.8 2.1 ABC transporter ATP-binding protein compare
BWI76_RS07785 +0.8 1.0 transcriptional regulator compare
BWI76_RS23460 +0.8 1.8 hypothetical protein compare
BWI76_RS22945 +0.8 2.5 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM compare
BWI76_RS10570 +0.8 1.5 cysteine ABC transporter substrate-binding protein compare
BWI76_RS06375 +0.8 1.3 oxidoreductase compare
BWI76_RS11780 +0.8 1.1 2-deoxyglucose-6-phosphatase compare
BWI76_RS19100 +0.8 3.0 putative acid phosphatase compare


Specific Phenotypes

For 6 genes in this experiment

For supernatant Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted across organisms