Experiment set14IT006 for Burkholderia phytofirmans PsJN

Compare to:

Vogels_fungal_media; pH 5.5

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -8.0 -3.4 phosphoglycerate kinase compare
BPHYT_RS06555 -7.9 -5.4 ketol-acid reductoisomerase compare
BPHYT_RS17680 -7.7 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS09500 -7.5 -4.0 glucose-6-phosphate isomerase compare
BPHYT_RS14915 -7.3 -4.8 phosphoserine aminotransferase compare
BPHYT_RS17670 -7.3 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS15920 -7.2 -5.0 argininosuccinate synthase compare
BPHYT_RS17715 -7.1 -4.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS17400 -7.1 -6.6 anthranilate phosphoribosyltransferase compare
BPHYT_RS04725 -6.6 -7.1 sulfite reductase compare
BPHYT_RS16735 -6.6 -4.6 phosphogluconate dehydratase compare
BPHYT_RS04955 -6.6 -1.4 methionyl-tRNA synthetase compare
BPHYT_RS33865 -6.4 -9.7 tryptophan synthase alpha chain compare
BPHYT_RS10100 -6.4 -3.5 dihydroxy-acid dehydratase compare
BPHYT_RS13705 -6.3 -3.0 chorismate synthase compare
BPHYT_RS30010 -5.9 -1.3 cell division protein compare
BPHYT_RS33915 -5.9 -6.8 isopropylmalate isomerase compare
BPHYT_RS33900 -5.8 -10.2 3-isopropylmalate dehydrogenase compare
BPHYT_RS17700 -5.8 -3.1 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS33835 -5.6 -5.7 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS06350 -5.5 -2.0 chemotaxis protein CheY compare
BPHYT_RS06405 -5.4 -5.2 phosphoribosylamine--glycine ligase compare
BPHYT_RS36275 -5.4 -2.0 hypothetical protein compare
BPHYT_RS28705 -5.4 -1.2 IclR family transcriptional regulator compare
BPHYT_RS16835 -5.3 -4.7 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS16245 -5.2 -2.8 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17890 -5.2 -1.9 shikimate kinase compare
BPHYT_RS11040 -5.0 -1.1 GntR family transcriptional regulator compare
BPHYT_RS33875 -5.0 -6.9 tryptophan synthase subunit alpha compare
BPHYT_RS17405 -5.0 -1.1 indole-3-glycerol phosphate synthase compare
BPHYT_RS20520 -5.0 -1.1 transcriptional regulator compare
BPHYT_RS03645 -4.8 -2.1 tRNA dimethylallyltransferase compare
BPHYT_RS03150 -4.8 -9.3 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS25845 -4.8 -1.0 RND transporter MFP subunit compare
BPHYT_RS14895 -4.7 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS08955 -4.7 -4.1 homoserine dehydrogenase compare
BPHYT_RS33880 -4.7 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS09825 -4.7 -1.7 Fe-S protein compare
BPHYT_RS14910 -4.7 -7.5 chorismate mutase compare
BPHYT_RS33840 -4.6 -6.9 amidophosphoribosyltransferase compare
BPHYT_RS15710 -4.5 -1.7 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS17685 -4.5 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS12985 -4.5 -1.9 amino acid acetyltransferase compare
BPHYT_RS01595 -4.5 -8.8 homoserine O-acetyltransferase compare
BPHYT_RS17690 -4.5 -8.8 imidazole glycerol phosphate synthase compare
BPHYT_RS04740 -4.4 -5.3 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS13220 -4.4 -4.3 phosphomethylpyrimidine synthase compare
BPHYT_RS09515 -4.3 -2.5 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS17855 -4.3 -11.5 glutamate synthase compare
BPHYT_RS36150 -4.2 -1.8 hypothetical protein compare
BPHYT_RS28300 -4.2 -1.3 histone nucleoid-structuring protein H-NS compare
BPHYT_RS15915 -4.2 -8.9 ornithine carbamoyltransferase compare
BPHYT_RS27370 -4.1 -1.7 CoA transferase compare
BPHYT_RS06900 -4.1 -2.8 aspartate aminotransferase compare
BPHYT_RS17675 -4.1 -2.0 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS14550 -4.1 -0.9 tRNA-Asn compare
BPHYT_RS16065 -4.1 -0.9 LacI family transcriptional regulator compare
BPHYT_RS06045 -4.0 -6.8 transaldolase compare
BPHYT_RS14190 -4.0 -3.9 carbamoyl phosphate synthase large subunit compare
BPHYT_RS18320 -3.9 -6.9 orotate phosphoribosyltransferase compare
BPHYT_RS12530 -3.9 -3.7 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS17390 -3.9 -10.2 anthranilate synthase subunit I compare
BPHYT_RS08850 -3.8 -1.6 transcriptional regulator compare
BPHYT_RS04720 -3.8 -5.4 transcriptional regulator compare
BPHYT_RS17885 -3.8 -4.0 3-dehydroquinate synthase compare
BPHYT_RS04745 -3.7 -3.0 sulfate adenylyltransferase compare
BPHYT_RS06545 -3.6 -5.9 acetolactate synthase compare
BPHYT_RS09690 -3.5 -1.1 phosphate starvation-inducible protein PsiF compare
BPHYT_RS33610 -3.5 -1.0 DNA polymerase I compare
BPHYT_RS12465 -3.5 -1.4 inositol monophosphatase compare
BPHYT_RS23880 -3.5 -1.4 sugar ABC transporter permease compare
BPHYT_RS08960 -3.4 -1.2 threonine synthase compare
BPHYT_RS04965 -3.3 -4.6 ATP-binding protein compare
BPHYT_RS26185 -3.3 -1.0 thioesterase compare
BPHYT_RS30750 -3.3 -2.0 GntR family transcriptional regulator compare
BPHYT_RS03280 -3.3 -1.0 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS03640 -3.3 -1.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS02975 -3.2 -2.4 membrane protein compare
BPHYT_RS14845 -3.2 -1.5 cysteine synthase compare
BPHYT_RS33645 -3.2 -3.5 homoserine kinase compare
BPHYT_RS02590 -3.2 -4.8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS16840 -3.2 -2.8 transketolase compare
BPHYT_RS05320 -3.1 -0.9 beta-lactamase compare
BPHYT_RS03725 -3.0 -1.1 serine hydroxymethyltransferase compare
BPHYT_RS17525 -3.0 -1.7 glutaredoxin compare
BPHYT_RS09620 -2.9 -2.2 aminodeoxychorismate lyase compare
BPHYT_RS34280 -2.9 -2.0 hypothetical protein compare
BPHYT_RS18965 -2.9 -1.7 chemotaxis protein CheY compare
BPHYT_RS15650 -2.8 -8.2 quinolinate synthetase compare
BPHYT_RS12845 -2.8 -10.0 ATPase compare
BPHYT_RS28065 -2.8 -1.2 hypothetical protein compare
BPHYT_RS19435 -2.8 -2.7 16S rRNA methyltransferase compare
BPHYT_RS28910 -2.8 -1.8 diguanylate phosphodiesterase compare
BPHYT_RS15075 -2.8 -1.5 dihydrokaempferol 4-reductase compare
BPHYT_RS28485 -2.8 -1.0 GntR family transcriptional regulator compare
BPHYT_RS25955 -2.7 -1.4 transcriptional regulator compare
BPHYT_RS04385 -2.7 -2.6 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS11705 -2.7 -1.4 hypothetical protein compare
BPHYT_RS29920 -2.7 -1.0 hypothetical protein compare
BPHYT_RS04730 -2.6 -1.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS01730 -2.6 -2.4 serine/threonine protein kinase compare
BPHYT_RS33850 -2.6 -1.3 sporulation protein compare
BPHYT_RS32150 -2.5 -1.2 hypothetical protein compare
BPHYT_RS04875 -2.5 -2.4 alpha-ribazole phosphatase compare
BPHYT_RS03625 -2.5 -5.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS16255 -2.4 -1.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS18340 -2.4 -1.3 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS09725 -2.4 -3.2 exopolysaccharide biosynthesis protein compare
BPHYT_RS02905 -2.4 -11.3 RNA polymerase subunit sigma-54 compare
BPHYT_RS15640 -2.4 -8.1 L-aspartate oxidase compare
BPHYT_RS10175 -2.4 -1.2 membrane protein compare
BPHYT_RS13200 -2.3 -1.5 molybdopterin binding oxidoreductase compare
BPHYT_RS30140 -2.3 -1.1 3-methylitaconate isomerase compare
BPHYT_RS05960 -2.3 -3.8 endoribonuclease L-PSP compare
BPHYT_RS06685 -2.3 -0.9 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS02765 -2.3 -1.7 cytochrome BD oxidase subunit I compare
BPHYT_RS14195 -2.3 -1.6 carbamoyl phosphate synthase small subunit compare
BPHYT_RS03570 -2.3 -3.7 heat-inducible transcription repressor HrcA compare
BPHYT_RS05020 -2.3 -4.3 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS12840 -2.3 -3.1 pyruvate dehydrogenase compare
BPHYT_RS02660 -2.2 -1.1 membrane protein compare
BPHYT_RS07410 -2.2 -1.5 glucosamine--fructose-6-phosphate aminotransferase compare
BPHYT_RS33920 -2.2 -3.4 type II citrate synthase compare
BPHYT_RS20835 -2.2 -1.5 pyridoxal 4-dehydrogenase compare
BPHYT_RS14180 -2.2 -1.6 membrane protein compare
BPHYT_RS07950 -2.2 -2.6 cysteine dioxygenase compare
BPHYT_RS17395 -2.1 -1.5 anthranilate synthase subunit II compare
BPHYT_RS22930 -2.1 -1.2 type II secretion system protein compare
BPHYT_RS01455 -2.1 -1.0 peptide deformylase compare
BPHYT_RS15670 -2.1 -3.9 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS29035 -2.1 -1.2 arsenic transporter compare
BPHYT_RS24755 -2.0 -2.0 catalase compare
BPHYT_RS18255 -2.0 -1.6 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS09480 -2.0 -0.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS14855 -2.0 -1.0 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS25065 -2.0 -1.1 glycine/betaine ABC transporter ATPase compare
BPHYT_RS22470 -2.0 -1.1 hydrolase compare
BPHYT_RS22815 -2.0 -1.3 TonB-denpendent receptor compare
BPHYT_RS29695 -2.0 -1.3 hypothetical protein compare
BPHYT_RS16975 -2.0 -2.8 shikimate 5-dehydrogenase compare
BPHYT_RS24175 -2.0 -2.1 C4-dicarboxylate ABC transporter compare
BPHYT_RS33615 -1.9 -1.6 decarboxylase compare
BPHYT_RS08685 -1.9 -2.0 hypothetical protein compare
BPHYT_RS25285 -1.9 -2.7 AraC family transcriptional regulator compare
BPHYT_RS12935 -1.9 -4.1 chemotaxis protein CheY compare
BPHYT_RS26570 -1.9 -0.6 5'-nucleotidase compare
BPHYT_RS03535 -1.9 -3.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS04820 -1.9 -2.7 LysR family transcriptional regulator compare
BPHYT_RS07060 -1.9 -1.5 aldo/keto reductase compare
BPHYT_RS00295 -1.9 -1.1 hypothetical protein compare
BPHYT_RS17095 -1.9 -1.5 proline--tRNA ligase compare
BPHYT_RS33580 -1.9 -2.3 geranyltranstransferase compare
BPHYT_RS15570 -1.9 -3.2 NAD-dependent dehydratase compare
BPHYT_RS30450 -1.8 -0.8 ABC transporter permease compare
BPHYT_RS11265 -1.8 -1.1 hypothetical protein compare
BPHYT_RS11795 -1.8 -0.8 membrane protein compare
BPHYT_RS21385 -1.8 -1.5 short-chain dehydrogenase compare
BPHYT_RS16345 -1.8 -2.1 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS20150 -1.8 -1.6 glycosyl transferase family 1 compare
BPHYT_RS25705 -1.8 -1.1 aldehyde dehydrogenase compare
BPHYT_RS26670 -1.8 -2.3 Cobalt-precorrin-5B C(1)-methyltransferase compare
BPHYT_RS26685 -1.8 -1.0 precorrin-8X methylmutase compare
BPHYT_RS34125 -1.8 -3.6 heavy metal translocating P-type ATPase compare
BPHYT_RS25290 -1.8 -1.9 membrane protein compare
BPHYT_RS19335 -1.8 -3.1 hypothetical protein compare
BPHYT_RS05905 -1.8 -0.7 hypothetical protein compare
BPHYT_RS20680 -1.7 -1.6 LacI family transcriptional regulator compare
BPHYT_RS03405 -1.7 -1.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BPHYT_RS17520 -1.7 -2.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS05155 -1.7 -2.7 acetyltransferase GCN5 compare
BPHYT_RS27905 -1.7 -1.4 MFS transporter compare
BPHYT_RS17100 -1.6 -3.5 RNA pyrophosphohydrolase compare
BPHYT_RS34895 -1.6 -2.0 endonuclease compare
BPHYT_RS29720 -1.6 -0.9 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS14505 -1.6 -1.3 membrane protein compare
BPHYT_RS11155 -1.6 -0.7 hypothetical protein compare
BPHYT_RS29450 -1.6 -1.1 phosphonate metabolism protein compare
BPHYT_RS35245 -1.6 -1.2 hypothetical protein compare
BPHYT_RS10345 -1.6 -0.7 flagellar motor protein MotB compare
BPHYT_RS09145 -1.6 -6.7 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS03755 -1.6 -1.4 pilus assembly protein PilE compare
BPHYT_RS16215 -1.6 -2.0 sensor histidine kinase compare
BPHYT_RS04290 -1.6 -1.0 glycosyl transferase family 2 compare
BPHYT_RS34775 -1.6 -3.4 diguanylate cyclase compare
BPHYT_RS17380 -1.6 -4.4 ribulose-phosphate 3-epimerase compare
BPHYT_RS32260 -1.6 -1.7 hypothetical protein compare
BPHYT_RS09245 -1.6 -1.3 ABC transporter ATP-binding protein compare
BPHYT_RS08030 -1.5 -1.3 transposase compare
BPHYT_RS16290 -1.5 -0.6 hypothetical protein compare
BPHYT_RS15645 -1.5 -3.7 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS11205 -1.5 -5.0 LacI family transcription regulator compare
BPHYT_RS25005 -1.5 -0.6 FMN reductase compare
BPHYT_RS27690 -1.5 -1.4 carbamate kinase compare
BPHYT_RS28055 -1.5 -2.2 membrane protein compare
BPHYT_RS25970 -1.5 -0.8 urea amidolyase compare
BPHYT_RS25820 -1.5 -1.5 sugar ABC transporter compare
BPHYT_RS36025 -1.5 -2.1 hypothetical protein compare
BPHYT_RS26300 -1.5 -0.9 ATP-dependent DNA ligase compare
BPHYT_RS16905 -1.5 -1.8 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS11285 -1.5 -1.7 LacI family transcription regulator compare


Specific Phenotypes

For 1 genes in this experiment