Experiment set14IT004 for Burkholderia phytofirmans PsJN

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
BPHYT_RS34815 -5.8 -2.4 ABC transporter compare
BPHYT_RS34410 -5.8 -1.2 hypothetical protein compare
BPHYT_RS01965 -5.8 -1.2 tRNA-Ala compare
BPHYT_RS15075 -5.7 -2.1 dihydrokaempferol 4-reductase compare
BPHYT_RS35675 -5.7 -2.0 short-chain dehydrogenase compare
BPHYT_RS14060 -5.5 -1.9 peptidase M23 compare
BPHYT_RS10740 -5.1 -1.1 LuxR family transcriptional regulator compare
BPHYT_RS11825 -4.9 -1.0 cytosine deaminase compare
BPHYT_RS36220 -4.9 -1.0 hypothetical protein compare
BPHYT_RS17405 -4.9 -1.0 indole-3-glycerol phosphate synthase compare
BPHYT_RS26465 -4.8 -1.0 metallophosphoesterase compare
BPHYT_RS22455 -4.8 -1.0 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS17030 -4.8 -1.0 lipid hydroperoxide peroxidase compare
BPHYT_RS04920 -4.8 -2.3 aspartate 1-decarboxylase compare
BPHYT_RS16270 -4.7 -3.0 phosphoglycerate kinase compare
BPHYT_RS33150 -4.7 -1.0 beta-lactamase compare
BPHYT_RS16710 -4.6 -1.0 LysR family transcriptional regulator compare
BPHYT_RS18710 -4.5 -2.5 membrane protein compare
BPHYT_RS03480 -4.3 -3.3 ferritin compare
BPHYT_RS33630 -4.3 -1.2 chromate transporter compare
BPHYT_RS01485 -4.2 -0.9 histidine kinase compare
BPHYT_RS20165 -4.2 -1.9 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BPHYT_RS24590 -4.1 -0.9 DeoR faimly transcriptional regulator compare
BPHYT_RS08765 -4.1 -0.9 ABC transporter ATP-binding protein compare
BPHYT_RS14855 -4.0 -2.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS01625 -4.0 -2.2 chemotaxis protein CheY compare
BPHYT_RS16835 -3.9 -3.8 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS05705 -3.9 -0.8 hypothetical protein compare
BPHYT_RS08235 -3.9 -0.8 nucleoprotein, Hfg, host factor I compare
BPHYT_RS08995 -3.9 -1.1 hypothetical protein compare
BPHYT_RS33850 -3.8 -1.1 sporulation protein compare
BPHYT_RS08850 -3.8 -1.6 transcriptional regulator compare
BPHYT_RS26685 -3.8 -1.1 precorrin-8X methylmutase compare
BPHYT_RS02660 -3.7 -1.1 membrane protein compare
BPHYT_RS13605 -3.7 -0.8 tRNA-Pro compare
BPHYT_RS26570 -3.6 -0.7 5'-nucleotidase compare
BPHYT_RS16245 -3.6 -3.1 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17520 -3.4 -5.0 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS33610 -3.3 -1.0 DNA polymerase I compare
BPHYT_RS33920 -3.3 -4.9 type II citrate synthase compare
BPHYT_RS08960 -3.3 -1.2 threonine synthase compare
BPHYT_RS02180 -3.3 -1.8 hypothetical protein compare
BPHYT_RS29085 -3.2 -1.1 LysR family transcriptional regulator compare
BPHYT_RS28595 -3.2 -0.9 glyoxalase compare
BPHYT_RS14845 -3.1 -1.4 cysteine synthase compare
BPHYT_RS14505 -3.1 -2.1 membrane protein compare
BPHYT_RS17095 -3.1 -1.6 proline--tRNA ligase compare
BPHYT_RS09650 -3.1 -2.1 hypothetical protein compare
BPHYT_RS24630 -3.1 -2.0 (2Fe-2S)-binding protein compare
BPHYT_RS03725 -3.0 -1.0 serine hydroxymethyltransferase compare
BPHYT_RS18320 -2.9 -4.5 orotate phosphoribosyltransferase compare
BPHYT_RS02570 -2.9 -4.1 phosphocarrier protein HPr compare
BPHYT_RS17445 -2.9 -3.5 GTP-binding protein YchF compare
BPHYT_RS10475 -2.8 -1.3 mammalian cell entry protein compare
BPHYT_RS05335 -2.7 -1.5 AraC family transcriptional regulator compare
BPHYT_RS23230 -2.6 -1.0 histidine kinase compare
BPHYT_RS09735 -2.5 -1.2 glycosyl transferase compare
BPHYT_RS36545 -2.5 -2.7 Resolvase helix-turn-helix domain-containing protein compare
BPHYT_RS05905 -2.5 -0.7 hypothetical protein compare
BPHYT_RS04335 -2.5 -1.2 membrane protein compare
BPHYT_RS06990 -2.5 -1.0 membrane protein compare
BPHYT_RS04095 -2.5 -0.7 SAM-dependent methyltransferase PhcB compare
BPHYT_RS17440 -2.5 -2.2 hypothetical protein compare
BPHYT_RS30795 -2.4 -1.0 short-chain dehydrogenase compare
BPHYT_RS18760 -2.4 -2.0 flagellar biosynthesis protein FliT compare
BPHYT_RS23650 -2.4 -0.7 hypothetical protein compare
BPHYT_RS03255 -2.4 -1.9 glutathione S-transferase compare
BPHYT_RS27850 -2.4 -1.2 hemerythrin compare
BPHYT_RS12510 -2.3 -1.6 RNA-binding protein compare
BPHYT_RS26965 -2.3 -0.8 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS16255 -2.3 -1.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS30845 -2.3 -1.6 polyketide cyclase compare
BPHYT_RS02595 -2.3 -0.7 sulfurtransferase compare
BPHYT_RS22145 -2.3 -1.3 phosphoesterase compare
BPHYT_RS27495 -2.3 -0.8 hypothetical protein compare
BPHYT_RS29235 -2.3 -1.3 cell shape determination protein CcmA compare
BPHYT_RS12845 -2.3 -8.7 ATPase compare
BPHYT_RS12990 -2.2 -1.3 iron transporter compare
BPHYT_RS13200 -2.2 -1.4 molybdopterin binding oxidoreductase compare
BPHYT_RS03640 -2.2 -2.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS33580 -2.2 -4.0 geranyltranstransferase compare
BPHYT_RS03520 -2.2 -1.3 ATP--cobalamin adenosyltransferase compare
BPHYT_RS02590 -2.2 -5.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17530 -2.2 -1.8 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS09355 -2.2 -1.1 LysR family transcriptional regulator compare
BPHYT_RS06025 -2.2 -2.8 hypothetical protein compare
BPHYT_RS04290 -2.2 -1.3 glycosyl transferase family 2 compare
BPHYT_RS15305 -2.1 -8.6 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS34035 -2.1 -1.1 type II and III secretion system outermembrane protein, secretin compare
BPHYT_RS36130 -2.1 -1.0 hypothetical protein compare
BPHYT_RS09620 -2.1 -2.1 aminodeoxychorismate lyase compare
BPHYT_RS05655 -2.1 -2.1 membrane protein compare
BPHYT_RS20900 -2.1 -1.5 phytanoyl-CoA dioxygenase compare
BPHYT_RS06190 -2.1 -2.3 heptosyltransferase compare
BPHYT_RS17265 -2.1 -0.9 cell division protein compare
BPHYT_RS05530 -2.1 -1.3 hypothetical protein compare
BPHYT_RS09980 -2.0 -0.9 TetR family transcriptional regulator compare
BPHYT_RS21470 -2.0 -1.2 6-hydroxynicotinate reductase compare
BPHYT_RS06160 -2.0 -3.4 glutamyl-Q tRNA(Asp) ligase compare
BPHYT_RS17890 -2.0 -1.1 shikimate kinase compare
BPHYT_RS22865 -1.9 -1.8 ATPase compare
BPHYT_RS23250 -1.9 -0.9 hypothetical protein compare
BPHYT_RS28485 -1.9 -0.9 GntR family transcriptional regulator compare
BPHYT_RS16180 -1.9 -0.7 TetR family transcriptional regulator compare
BPHYT_RS01620 -1.9 -4.6 sensor histidine kinase compare
BPHYT_RS13645 -1.9 -6.8 threonine--tRNA ligase compare
BPHYT_RS24585 -1.9 -1.2 NUDIX hydrolase compare
BPHYT_RS21725 -1.9 -0.9 taurine ABC transporter substrate-binding protein compare
BPHYT_RS23760 -1.9 -1.4 phosphonate ABC transporter permease compare
BPHYT_RS33840 -1.9 -4.9 amidophosphoribosyltransferase compare
BPHYT_RS05095 -1.8 -2.7 hydroxymethylpyrimidine transporter compare
BPHYT_RS32165 -1.8 -1.4 type IV secretion system protein VirB9 compare
BPHYT_RS16735 -1.8 -3.6 phosphogluconate dehydratase compare
BPHYT_RS20325 -1.8 -1.7 acyl-CoA dehydrogenase compare
BPHYT_RS36480 -1.8 -0.9 hypothetical protein compare
BPHYT_RS24655 -1.8 -1.5 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS12550 -1.8 -0.6 GTP-binding protein HflX compare
BPHYT_RS26450 -1.8 -2.1 transcriptional regulator compare
BPHYT_RS06600 -1.8 -1.0 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS27570 -1.8 -1.2 universal stress protein UspA compare
BPHYT_RS28785 -1.8 -1.8 acetyltransferase compare
BPHYT_RS26315 -1.8 -2.4 sigma factor sigB regulation protein rsbQ compare
BPHYT_RS12155 -1.8 -3.1 RNA-binding protein S4 compare
BPHYT_RS05030 -1.8 -2.2 sugar ABC transporter permease compare
BPHYT_RS15415 -1.8 -5.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS11540 -1.7 -1.3 ureidoglycolate hydrolase compare
BPHYT_RS22420 -1.7 -0.9 membrane protein compare
BPHYT_RS31945 -1.7 -3.3 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS25070 -1.7 -0.9 choline ABC transporter permease compare
BPHYT_RS22190 -1.7 -2.1 nucleoid-structuring protein H-NS compare
BPHYT_RS29950 -1.7 -1.3 hypothetical protein compare
BPHYT_RS09510 -1.7 -3.0 amino acid dehydrogenase compare
BPHYT_RS07220 -1.7 -0.7 GCN5 family acetyltransferase compare
BPHYT_RS25640 -1.7 -2.5 MFS transporter compare
BPHYT_RS34530 -1.7 -1.3 LysR family transcriptional regulator compare
BPHYT_RS32055 -1.7 -1.5 hypothetical protein compare
BPHYT_RS20970 -1.7 -0.9 hypothetical protein compare
BPHYT_RS17685 -1.7 -2.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS35945 -1.6 -1.3 response regulator receiver compare
BPHYT_RS22910 -1.6 -0.7 hypothetical protein compare
BPHYT_RS14380 -1.6 -3.0 elongation factor 4 compare
BPHYT_RS12900 -1.6 -0.8 transposase compare
BPHYT_RS36275 -1.6 -0.9 hypothetical protein compare
BPHYT_RS23090 -1.6 -1.0 histidine kinase compare
BPHYT_RS16090 -1.6 -0.9 hypothetical protein compare
BPHYT_RS09580 -1.6 -1.5 2-aminoadipate aminotransferase compare
BPHYT_RS02865 -1.6 -2.5 hypothetical protein compare
BPHYT_RS13390 -1.6 -0.6 IclR family transcriptional regulator compare
BPHYT_RS11555 -1.6 -1.4 allantoinase compare
BPHYT_RS08280 -1.6 -1.6 acyl dehydratase compare
BPHYT_RS33765 -1.6 -0.6 membrane protein compare
BPHYT_RS27145 -1.6 -1.0 TetR family transcriptional regulator compare
BPHYT_RS22135 -1.6 -1.1 3-ketoacyl-ACP reductase compare
BPHYT_RS17035 -1.6 -2.2 sugar kinase compare
BPHYT_RS26385 -1.5 -1.0 glutamine amidotransferase compare
BPHYT_RS09385 -1.5 -0.5 FAD-dependent oxidoreductase compare
BPHYT_RS16340 -1.5 -2.5 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS30585 -1.5 -1.1 dTDP-glucose 4,6-dehydratase compare
BPHYT_RS20750 -1.5 -1.1 LacI family transcriptional regulator compare
BPHYT_RS04585 -1.5 -1.5 hypothetical protein compare
BPHYT_RS04455 -1.5 -0.7 glycosyl transferase compare
BPHYT_RS30505 -1.5 -1.2 ABC transporter permease compare
BPHYT_RS08945 -1.5 -3.6 hypothetical protein compare
BPHYT_RS13250 -1.5 -2.0 hypothetical protein compare
BPHYT_RS12840 -1.5 -1.9 pyruvate dehydrogenase compare
BPHYT_RS36460 -1.5 -1.4 hypothetical protein compare
BPHYT_RS16350 -1.5 -1.7 hypothetical protein compare
BPHYT_RS03455 -1.5 -1.7 paraquat-inducible protein A compare
BPHYT_RS02150 -1.5 -1.7 biotin synthase compare
BPHYT_RS34430 -1.5 -0.7 2-keto-4-pentenoate hydratase compare
BPHYT_RS13080 -1.5 -0.7 hypothetical protein compare
BPHYT_RS17700 -1.5 -2.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS16345 -1.5 -2.3 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS34240 -1.5 -1.1 ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data) compare
BPHYT_RS01730 -1.5 -1.3 serine/threonine protein kinase compare
BPHYT_RS18265 -1.4 -1.6 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS12225 -1.4 -3.2 carnitine dehydratase compare
BPHYT_RS01455 -1.4 -0.8 peptide deformylase compare
BPHYT_RS10500 -1.4 -0.8 acetolactate synthase compare
BPHYT_RS18515 -1.4 -1.2 hypothetical protein compare
BPHYT_RS35655 -1.4 -1.0 hypothetical protein compare
BPHYT_RS14190 -1.4 -3.4 carbamoyl phosphate synthase large subunit compare
BPHYT_RS30830 -1.4 -1.0 MFS transporter compare
BPHYT_RS20845 -1.4 -0.9 peroxidase compare
BPHYT_RS16290 -1.4 -0.6 hypothetical protein compare
BPHYT_RS34805 -1.4 -3.9 ABC transporter compare
BPHYT_RS04115 -1.4 -2.0 glycosyhydrolase compare
BPHYT_RS25625 -1.4 -1.3 glutathione S-transferase compare
BPHYT_RS06405 -1.4 -2.1 phosphoribosylamine--glycine ligase compare
BPHYT_RS03400 -1.4 -0.8 ATP-dependent DNA helicase RecG compare
BPHYT_RS05610 -1.4 -3.5 DNA-cytosine methyltransferase compare
BPHYT_RS17810 -1.4 -1.4 transcriptional regulator compare
BPHYT_RS09905 -1.4 -0.8 hypothetical protein compare
BPHYT_RS26185 -1.4 -0.7 thioesterase compare
BPHYT_RS24665 -1.4 -1.3 ABC transporter permease compare
BPHYT_RS17690 -1.4 -4.3 imidazole glycerol phosphate synthase compare
BPHYT_RS10925 -1.4 -1.5 aldehyde dehydrogenase compare
BPHYT_RS09515 -1.4 -2.1 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS21735 -1.4 -3.4 IclR family transcriptional regulator compare
BPHYT_RS11480 -1.4 -1.2 heme ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms