Experiment set14IT004 for Burkholderia phytofirmans PsJN

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS09860 +2.4 2.1 pilus assembly protein PilP compare
BPHYT_RS02710 +2.0 1.7 hypothetical protein compare
BPHYT_RS11970 +1.9 2.0 cupin compare
BPHYT_RS35750 +1.9 1.0 hypothetical protein compare
BPHYT_RS28255 +1.9 2.2 hypothetical protein compare
BPHYT_RS31050 +1.9 1.6 epimerase compare
BPHYT_RS04400 +1.9 0.9 Crp/Fnr family transcriptional regulator compare
BPHYT_RS25875 +1.9 1.8 type III secretion protein compare
BPHYT_RS28410 +1.8 1.8 ubiquinol oxidase subunit II, cyanide insensitive compare
BPHYT_RS22300 +1.8 2.8 hypothetical protein compare
BPHYT_RS11635 +1.8 1.4 RNA polymerase subunit sigma-24 compare
BPHYT_RS09280 +1.7 1.8 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS25980 +1.7 1.6 urea carboxylase compare
BPHYT_RS05730 +1.7 6.4 hypothetical protein compare
BPHYT_RS28075 +1.7 1.4 cytochrome B561 compare
BPHYT_RS27805 +1.7 2.4 RNA-metabolising metallo-beta-lactamase compare
BPHYT_RS04430 +1.7 1.6 amino acid ABC transporter ATPase compare
BPHYT_RS13490 +1.7 2.1 hypothetical protein compare
BPHYT_RS29855 +1.7 1.1 protein-tyrosine-phosphatase compare
BPHYT_RS20725 +1.6 1.3 histidine kinase compare
BPHYT_RS07480 +1.6 1.9 FAD-dependent oxidoreductase compare
BPHYT_RS07255 +1.6 1.8 4-oxalocrotonate decarboxylase compare
BPHYT_RS13325 +1.6 2.8 TetR family transcriptional regulator compare
BPHYT_RS28365 +1.6 1.8 Germin subfamily 1 member 15 compare
BPHYT_RS34490 +1.6 1.2 hypothetical protein compare
BPHYT_RS23600 +1.5 2.4 hypothetical protein compare
BPHYT_RS03375 +1.5 2.0 NAD(P) transhydrogenase compare
BPHYT_RS28605 +1.5 1.7 NADPH-dependent FMN reductase compare
BPHYT_RS08385 +1.5 1.7 secretion protein compare
BPHYT_RS30645 +1.5 1.7 hypothetical protein compare
BPHYT_RS05825 +1.5 1.7 hypothetical protein compare
BPHYT_RS30065 +1.5 2.2 shikimate dehydrogenase compare
BPHYT_RS08150 +1.4 1.2 membrane protein compare
BPHYT_RS27410 +1.4 1.3 amidohydrolase compare
BPHYT_RS32210 +1.4 1.8 hypothetical protein compare
BPHYT_RS21805 +1.4 1.5 transcriptional regulator compare
BPHYT_RS23395 +1.4 1.0 glycosyl transferase compare
BPHYT_RS10645 +1.4 1.4 cyanate hydratase compare
BPHYT_RS07570 +1.4 1.2 hypothetical protein compare
BPHYT_RS22860 +1.4 1.0 chemotaxis protein CheY compare
BPHYT_RS20155 +1.4 1.1 hypothetical protein compare
BPHYT_RS05895 +1.4 0.9 hypothetical protein compare
BPHYT_RS18590 +1.4 0.9 hypothetical protein compare
BPHYT_RS10065 +1.4 1.4 cytochrome C oxidase subunit I compare
BPHYT_RS00940 +1.4 3.3 transposase compare
BPHYT_RS20715 +1.4 1.2 peptidase compare
BPHYT_RS34970 +1.4 2.3 hypothetical protein compare
BPHYT_RS08360 +1.4 1.9 LysR family transcriptional regulator compare
BPHYT_RS30800 +1.3 1.8 MFS transporter compare
BPHYT_RS26775 +1.3 1.5 chemotaxis protein CheB compare
BPHYT_RS13470 +1.3 0.9 arylsulfate sulfotransferase compare
BPHYT_RS07415 +1.3 1.9 hypothetical protein compare
BPHYT_RS31260 +1.3 1.5 histidine kinase compare
BPHYT_RS27715 +1.3 2.2 UspA domain-containing protein compare
BPHYT_RS26025 +1.3 1.0 hypothetical protein compare
BPHYT_RS34295 +1.3 0.9 fimbrial protein compare
BPHYT_RS06975 +1.3 1.2 glutamate racemase compare
BPHYT_RS11795 +1.3 1.2 membrane protein compare
BPHYT_RS10720 +1.3 1.2 hypothetical protein compare
BPHYT_RS02860 +1.3 0.9 membrane protein compare
BPHYT_RS28620 +1.3 1.4 enoyl-CoA hydratase compare
BPHYT_RS02135 +1.3 1.7 glyoxylate reductase compare
BPHYT_RS25560 +1.3 1.4 RNA polymerase sigma factor compare
BPHYT_RS05670 +1.3 3.4 hypothetical protein compare
BPHYT_RS28995 +1.3 3.5 histidine kinase compare
BPHYT_RS20520 +1.3 1.2 transcriptional regulator compare
BPHYT_RS20905 +1.2 1.1 hypothetical protein compare
BPHYT_RS32470 +1.2 1.6 membrane protein compare
BPHYT_RS19915 +1.2 2.4 hemolysin D compare
BPHYT_RS28240 +1.2 2.3 L-rhamnonate dehydratase compare
BPHYT_RS25770 +1.2 1.2 hypothetical protein compare
BPHYT_RS04040 +1.2 1.5 hypothetical protein compare
BPHYT_RS28030 +1.2 1.3 methylmalonate-semialdehyde dehydrogenase compare
BPHYT_RS24285 +1.2 1.6 TetR family transcriptional regulator compare
BPHYT_RS31790 +1.2 2.6 methyl-accepting chemotaxis sensory transducer compare
BPHYT_RS20055 +1.2 3.4 hypothetical protein compare
BPHYT_RS31020 +1.2 1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS03470 +1.2 3.8 LysR family transcriptional regulator compare
BPHYT_RS26955 +1.2 0.8 succinylglutamate desuccinylase compare
BPHYT_RS11775 +1.2 4.2 AraC family transcriptional regulator compare
BPHYT_RS29945 +1.2 2.1 histidine kinase compare
BPHYT_RS21465 +1.2 3.0 TetR family transcriptional regulator compare
BPHYT_RS29695 +1.2 1.4 hypothetical protein compare
BPHYT_RS25605 +1.2 3.2 symporter compare
BPHYT_RS35955 +1.2 1.2 hypothetical protein compare
BPHYT_RS11050 +1.2 1.4 molecular chaperone compare
BPHYT_RS26550 +1.2 1.3 Fis family transcriptional regulator compare
BPHYT_RS22930 +1.2 1.7 type II secretion system protein compare
BPHYT_RS27490 +1.2 2.6 porin compare
BPHYT_RS07180 +1.1 4.0 Zn-dependent protease compare
BPHYT_RS07250 +1.1 1.8 4-hydroxy-2-oxovalerate aldolase compare
BPHYT_RS15955 +1.1 1.6 methylated-DNA--protein-cysteine methyltransferase compare
BPHYT_RS11125 +1.1 1.1 alkylhydroperoxidase compare
BPHYT_RS07595 +1.1 1.0 membrane protein compare
BPHYT_RS09755 +1.1 0.9 glycosyl transferase family 1 compare
BPHYT_RS19905 +1.1 1.5 membrane protein compare
BPHYT_RS11930 +1.1 1.8 3-hydroxybutyrate dehydrogenase compare
BPHYT_RS18785 +1.1 1.7 flagellar assembly protein FliH compare
BPHYT_RS26995 +1.1 2.6 peptidase S10 compare
BPHYT_RS35080 +1.1 2.9 short-chain dehydrogenase compare
BPHYT_RS05625 +1.1 1.7 hypothetical protein compare
BPHYT_RS02725 +1.1 1.6 GntR family transcriptional regulator compare
BPHYT_RS23920 +1.1 0.9 malonate decarboxylase subunit beta compare
BPHYT_RS27890 +1.1 0.6 hypothetical protein compare
BPHYT_RS08130 +1.1 1.5 transposase compare
BPHYT_RS33185 +1.1 4.4 methyltransferase type 11 compare
BPHYT_RS22125 +1.1 1.3 hypothetical protein compare
BPHYT_RS25655 +1.1 1.7 short-chain dehydrogenase compare
BPHYT_RS13345 +1.1 2.9 crotonase compare
BPHYT_RS23115 +1.1 2.5 hypothetical protein compare
BPHYT_RS29915 +1.1 2.5 GntR family transcriptional regulator compare
BPHYT_RS23060 +1.1 2.7 3-isopropylmalate dehydratase large subunit compare
BPHYT_RS03900 +1.1 0.8 phospholipid-binding protein compare
BPHYT_RS00790 +1.1 2.2 conjugal transfer protein TraF compare
BPHYT_RS09590 +1.1 3.6 thioesterase compare
BPHYT_RS11925 +1.1 3.2 membrane protein compare
BPHYT_RS12535 +1.1 0.8 membrane protein compare
BPHYT_RS13160 +1.1 1.0 membrane protein compare
BPHYT_RS01280 +1.1 1.5 hypothetical protein compare
BPHYT_RS06120 +1.1 1.3 heat-shock protein compare
BPHYT_RS15615 +1.1 1.8 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS07170 +1.1 2.9 ABC transporter compare
BPHYT_RS07855 +1.1 1.9 benzoate 1,2-dioxygenase subunit alpha compare
BPHYT_RS21625 +1.1 0.8 LysR family transcriptional regulator compare
BPHYT_RS14605 +1.1 2.2 sodium transporter compare
BPHYT_RS24500 +1.1 0.9 histidine kinase compare
BPHYT_RS30860 +1.0 1.8 sugar ABC transporter permease compare
BPHYT_RS09870 +1.0 2.4 membrane protein compare
BPHYT_RS23350 +1.0 1.3 NAD-dependent epimerase/dehydratase compare
BPHYT_RS27330 +1.0 0.8 hypothetical protein compare
BPHYT_RS09815 +1.0 2.4 malate synthase compare
BPHYT_RS19565 +1.0 4.5 gamma-glutamyl:cysteine ligase compare
BPHYT_RS21075 +1.0 1.5 (2Fe-2S)-binding protein compare
BPHYT_RS11810 +1.0 0.9 LysR family transcriptional regulator compare
BPHYT_RS08485 +1.0 4.2 undecaprenyl-phosphate glucose phosphotransferase compare
BPHYT_RS21385 +1.0 1.7 short-chain dehydrogenase compare
BPHYT_RS10680 +1.0 1.2 LysR family transcriptional regulator compare
BPHYT_RS25545 +1.0 1.7 hypothetical protein compare
BPHYT_RS22815 +1.0 1.2 TonB-denpendent receptor compare
BPHYT_RS30290 +1.0 1.8 MFS transporter compare
BPHYT_RS07140 +1.0 2.1 hypothetical protein compare
BPHYT_RS20425 +1.0 1.2 hypothetical protein compare
BPHYT_RS07230 +1.0 1.9 LysR family transcriptional regulator compare
BPHYT_RS36450 +1.0 1.5 hypothetical protein compare
BPHYT_RS07540 +1.0 0.7 hypothetical protein compare
BPHYT_RS20440 +1.0 0.9 IclR family transcriptional regulator compare
BPHYT_RS33460 +1.0 0.7 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS30210 +1.0 1.7 GCN5 family acetyltransferase compare
BPHYT_RS31845 +1.0 3.4 sodium:solute symporter compare
BPHYT_RS33075 +1.0 1.8 sulfatase maturase compare
BPHYT_RS17165 +1.0 1.7 cell division protein ZapD compare
BPHYT_RS31205 +1.0 1.4 peptide ABC transporter ATP-binding protein compare
BPHYT_RS20060 +1.0 0.9 hypothetical protein compare
BPHYT_RS05190 +1.0 2.0 ADP-heptose--LPS heptosyltransferase compare
BPHYT_RS27210 +1.0 2.4 alcohol dehydrogenase compare
BPHYT_RS26305 +1.0 2.0 exonuclease compare
BPHYT_RS20220 +1.0 1.0 antibiotic synthesis protein MbtH compare
BPHYT_RS24205 +1.0 1.7 aldolase compare
BPHYT_RS13460 +1.0 2.2 chemotaxis protein compare
BPHYT_RS11945 +1.0 2.5 multidrug transporter compare
BPHYT_RS07925 +0.9 1.3 glutamine amidotransferase compare
BPHYT_RS28660 +0.9 0.8 polyvinylalcohol dehydrogenase compare
BPHYT_RS07320 +0.9 1.0 dihydrodipicolinate synthetase compare
BPHYT_RS31630 +0.9 1.9 hypothetical protein compare
BPHYT_RS25080 +0.9 1.2 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS25515 +0.9 1.4 glutathione S-transferase compare
BPHYT_RS13555 +0.9 0.7 acyl-CoA dehydrogenase compare
BPHYT_RS22000 +0.9 1.7 hypothetical protein compare
BPHYT_RS08645 +0.9 1.3 sulfonate ABC transporter compare
BPHYT_RS22485 +0.9 1.5 NADP-dependent aryl-alcohol dehydrogenase compare
BPHYT_RS23370 +0.9 1.2 glycosyl transferase family 1 compare
BPHYT_RS29520 +0.9 0.7 hypothetical protein compare
BPHYT_RS35525 +0.9 1.7 hypothetical protein compare
BPHYT_RS00525 +0.9 3.8 aldehyde dismutase compare
BPHYT_RS25285 +0.9 1.5 AraC family transcriptional regulator compare
BPHYT_RS06435 +0.9 1.1 hypothetical protein compare
BPHYT_RS13385 +0.9 1.8 hypothetical protein compare
BPHYT_RS01795 +0.9 4.7 histidine kinase compare
BPHYT_RS13935 +0.9 1.2 mannosyltransferase compare
BPHYT_RS20705 +0.9 2.3 Chase2 sensor protein compare
BPHYT_RS07795 +0.9 1.5 IclR family transcriptional regulator compare
BPHYT_RS10675 +0.9 1.2 muconate cycloisomerase compare
BPHYT_RS21440 +0.9 2.1 sugar ABC transporter permease compare
BPHYT_RS11800 +0.9 2.0 acetate permease compare
BPHYT_RS09810 +0.9 2.0 hypothetical protein compare
BPHYT_RS25220 +0.9 1.4 ferredoxin oxidoreductase compare
BPHYT_RS05700 +0.9 1.8 hypothetical protein compare
BPHYT_RS18610 +0.9 1.9 lytic transglycosylase compare
BPHYT_RS27920 +0.9 0.9 tricarballylate utilization protein B compare
BPHYT_RS15755 +0.9 2.2 mannose-6-phosphate isomerase compare
BPHYT_RS32340 +0.9 3.1 LrgA family protein compare
BPHYT_RS07850 +0.9 1.4 catechol 1,2-dioxygenase compare
BPHYT_RS32830 +0.9 1.7 AraC family transcriptional regulator compare
BPHYT_RS11965 +0.9 1.9 alkylhydroperoxidase compare
BPHYT_RS02220 +0.9 1.6 butyryl-CoA dehydrogenase compare
BPHYT_RS21675 +0.9 2.5 FAD-dependent oxidoreductase compare
BPHYT_RS17885 +0.9 2.5 3-dehydroquinate synthase compare
BPHYT_RS21415 +0.9 2.0 3-oxoadipate CoA-transferase subunit A compare
BPHYT_RS03280 +0.9 0.9 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS13360 +0.9 3.5 aldehyde dehydrogenase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms