Experiment set14IT002 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and Iron (II) sulfate heptahydrate 0.002 mg/ml

200 most important genes:

  gene name fitness t score description  
BWI76_RS18925 -7.4 -5.1 histidinol dehydrogenase compare
BWI76_RS04255 -7.4 -5.1 threonine synthase compare
BWI76_RS18935 -7.3 -8.6 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS18950 -7.1 -4.6 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS11965 -7.1 -4.9 orotidine-5'-phosphate decarboxylase compare
BWI76_RS00835 -6.9 -12.5 phosphoenolpyruvate carboxylase compare
BWI76_RS21265 -6.7 -14.9 phosphoribosylformylglycinamidine synthase compare
BWI76_RS00850 -6.4 -12.5 acetylglutamate kinase compare
BWI76_RS18930 -6.4 -5.4 histidinol-phosphate transaminase compare
BWI76_RS27385 -6.4 -4.4 orotate phosphoribosyltransferase compare
BWI76_RS04675 -6.3 -7.5 3-isopropylmalate dehydrogenase compare
BWI76_RS20350 -6.2 -6.3 amidophosphoribosyltransferase compare
BWI76_RS00845 -6.1 -10.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS00990 -6.0 -13.4 ketol-acid reductoisomerase compare
BWI76_RS02995 -6.0 -7.6 aspartate carbamoyltransferase compare
BWI76_RS23365 -6.0 -3.8 LysR family transcriptional regulator compare
BWI76_RS00855 -5.8 -11.2 argininosuccinate lyase compare
BWI76_RS04250 -5.7 -8.8 homoserine kinase compare
BWI76_RS01615 -5.7 -10.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS07070 -5.6 -3.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS04465 -5.6 -6.6 carbamoyl-phosphate synthase small subunit compare
BWI76_RS04470 -5.6 -7.6 carbamoyl phosphate synthase large subunit compare
BWI76_RS00805 -5.5 -5.5 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS11860 -5.4 -9.2 anthranilate synthase component I compare
BWI76_RS04245 -5.4 -14.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS27390 -5.3 -6.6 ribonuclease PH compare
BWI76_RS00785 -5.2 -5.1 cystathionine gamma-synthase compare
BWI76_RS18955 -5.2 -5.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS25115 -5.2 -10.4 argininosuccinate synthase compare
BWI76_RS23220 -5.1 -12.4 amino-acid N-acetyltransferase compare
BWI76_RS26460 -5.1 -3.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS08385 -5.0 -2.8 citrate (Si)-synthase compare
BWI76_RS26455 -5.0 -2.5 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS00975 -5.0 -8.3 dihydroxy-acid dehydratase compare
BWI76_RS11850 -4.9 -11.7 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS01655 -4.8 -9.1 homoserine O-succinyltransferase compare
BWI76_RS11855 -4.6 -8.1 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS04665 -4.6 -22.9 3-isopropylmalate dehydratase small subunit compare
BWI76_RS01610 -4.6 -5.9 phosphoribosylamine--glycine ligase compare
BWI76_RS22765 -4.6 -6.3 sulfite reductase subunit alpha compare
BWI76_RS07065 -4.5 -5.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS20965 -4.4 -4.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS09910 -4.4 -16.0 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS04670 -4.4 -15.2 3-isopropylmalate dehydratase large subunit compare
BWI76_RS23265 -4.4 -2.1 hypothetical protein compare
BWI76_RS11840 -4.3 -2.2 tryptophan synthase subunit alpha compare
BWI76_RS10990 -4.3 -2.2 dihydroorotase compare
BWI76_RS22755 -4.3 -4.2 phosphoadenosine phosphosulfate reductase compare
BWI76_RS18940 -4.3 -4.2 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS20895 -4.2 -4.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS20355 -4.2 -4.1 colicin V production protein compare
BWI76_RS08520 -4.2 -2.5 colicin transporter TolQ compare
BWI76_RS05840 -4.2 -2.9 glutamate 5-kinase compare
BWI76_RS04525 -4.1 -2.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS25645 -4.1 -6.1 shikimate dehydrogenase compare
BWI76_RS03010 -4.0 -8.2 ornithine carbamoyltransferase compare
BWI76_RS24285 -3.9 -10.0 cystathionine beta-lyase compare
BWI76_RS00980 -3.9 -14.6 PLP-dependent threonine dehydratase compare
BWI76_RS09760 -3.9 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS05015 -3.9 -2.6 transcriptional regulator compare
BWI76_RS21070 -3.8 -2.3 outer membrane protein assembly factor BamB compare
BWI76_RS04240 -3.8 -1.3 thr operon leader peptide compare
BWI76_RS11845 -3.6 -1.2 tryptophan synthase subunit beta compare
BWI76_RS16955 -3.6 -1.3 hypothetical protein compare
BWI76_RS05260 -3.5 -1.7 chaperone compare
BWI76_RS22760 -3.5 -7.2 sulfite reductase subunit beta compare
BWI76_RS21310 -3.5 -1.7 DNA repair protein RecO compare
BWI76_RS22690 -3.5 -3.3 adenylyl-sulfate kinase compare
BWI76_RS08530 -3.5 -1.7 protein TolA compare
BWI76_RS00985 -3.4 -8.3 transcriptional regulator IlvY compare
BWI76_RS23920 -3.4 -2.3 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS21475 -3.3 -3.9 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS20360 -3.3 -1.2 cell division protein DedD compare
BWI76_RS26000 -3.3 -10.7 aspartate aminotransferase family protein compare
BWI76_RS01800 -3.2 -2.2 glucose-6-phosphate isomerase compare
BWI76_RS01115 -3.2 -2.9 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS04680 -3.1 -8.5 2-isopropylmalate synthase compare
BWI76_RS08525 -3.1 -1.6 colicin transporter compare
BWI76_RS18920 -3.1 -3.1 ATP phosphoribosyltransferase compare
BWI76_RS04160 -3.0 -3.5 phosphoserine phosphatase compare
BWI76_RS04685 -2.9 -8.7 putative leucine operon leader peptide compare
BWI76_RS06535 -2.9 -2.0 endopeptidase La compare
BWI76_RS09755 -2.9 -2.0 phosphoserine transaminase compare
BWI76_RS25335 -2.9 -2.4 stringent starvation protein A compare
BWI76_RS26055 -2.8 -10.0 siroheme synthase compare
BWI76_RS21580 -2.8 -1.7 SsrA-binding protein compare
BWI76_RS12495 -2.7 -1.3 2-Cys peroxiredoxin compare
BWI76_RS08535 -2.7 -1.6 translocation protein TolB compare
BWI76_RS17980 -2.7 -4.7 RNA chaperone ProQ compare
BWI76_RS08210 -2.7 -1.3 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS21350 -2.7 -2.9 anti-RNA polymerase sigma factor SigE compare
BWI76_RS20380 -2.6 -0.9 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS21075 -2.6 -2.1 membrane protein compare
BWI76_RS09645 -2.5 -0.9 thioredoxin-disulfide reductase compare
BWI76_RS20440 -2.5 -2.7 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS21450 -2.5 -2.4 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS15825 -2.5 -1.1 hypothetical protein compare
BWI76_RS21465 -2.4 -2.9 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS21345 -2.4 -2.6 sigma-E factor regulatory protein RseB compare
BWI76_RS05835 -2.4 -2.1 gamma-glutamyl-phosphate reductase compare
BWI76_RS24580 -2.4 -4.2 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS01220 -2.4 -5.7 DNA-dependent helicase II compare
BWI76_RS18815 -2.4 -2.8 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS02530 -2.3 -1.6 tRNA dimethylallyltransferase compare
BWI76_RS16425 -2.3 -3.9 hypothetical protein compare
BWI76_RS24605 -2.3 -5.5 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS04645 -2.3 -3.4 3-dehydroquinase compare
BWI76_RS00180 -2.2 -1.1 F0F1 ATP synthase subunit epsilon compare
BWI76_RS23360 -2.2 -1.4 diaminopimelate decarboxylase compare
BWI76_RS00965 -2.2 -1.0 acetolactate synthase 2 small subunit compare
BWI76_RS17975 -2.1 -5.3 tail-specific protease compare
BWI76_RS09970 -2.1 -0.9 porin OmpA compare
BWI76_RS00875 -2.1 -5.0 DNA-binding transcriptional regulator FabR compare
BWI76_RS26390 -2.0 -8.2 cell division protein FtsX compare
BWI76_RS21370 -2.0 -1.3 ATP-dependent RNA helicase SrmB compare
BWI76_RS27440 -2.0 -1.3 DNA helicase RecG compare
BWI76_RS09670 -2.0 -3.4 recombination factor protein RarA compare
BWI76_RS19905 -2.0 -3.3 OmpK36 porin compare
BWI76_RS24600 -1.9 -2.0 dihydroxyacetone kinase compare
BWI76_RS14320 -1.9 -1.8 hypothetical protein compare
BWI76_RS00390 -1.9 -4.9 two-component system sensor histidine kinase NtrB compare
BWI76_RS10745 -1.9 -0.9 hypothetical protein compare
BWI76_RS24900 -1.9 -1.2 DeoR family transcriptional regulator compare
BWI76_RS09190 -1.9 -1.3 hypothetical protein compare
BWI76_RS01095 -1.9 -2.8 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS09730 -1.8 -0.8 pyruvate formate lyase 1-activating protein compare
BWI76_RS20640 -1.8 -4.1 cysteine synthase A compare
BWI76_RS26620 -1.8 -0.8 Fe-S biogenesis protein NfuA compare
BWI76_RS21480 -1.8 -4.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS04100 -1.8 -3.4 peptide chain release factor 3 compare
BWI76_RS00715 -1.8 -1.2 two-component sensor histidine kinase compare
BWI76_RS21235 -1.8 -1.0 hypothetical protein compare
BWI76_RS19770 -1.7 -1.8 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS16200 -1.7 -1.6 NAD(P) transhydrogenase subunit beta compare
BWI76_RS01170 -1.7 -3.4 uroporphyrinogen-III C-methyltransferase compare
BWI76_RS01275 -1.7 -5.9 LysR family transcriptional regulator compare
BWI76_RS11440 -1.7 -1.3 hypothetical protein compare
BWI76_RS01185 -1.7 -1.1 adenylate cyclase compare
BWI76_RS11520 -1.6 -1.1 hypothetical protein compare
BWI76_RS16490 -1.6 -1.4 glutaredoxin compare
BWI76_RS00400 -1.6 -0.9 glutamine synthetase compare
BWI76_RS14770 -1.6 -1.1 PTS IIA 2 domain protein compare
BWI76_RS07465 -1.6 -1.5 TetR family transcriptional regulator compare
BWI76_RS22700 -1.6 -6.0 sulfate adenylyltransferase subunit 2 compare
BWI76_RS05120 -1.6 -5.4 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS01080 -1.6 -5.6 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS02815 -1.6 -1.7 fructose-bisphosphatase class I compare
BWI76_RS09625 -1.6 -1.0 hypothetical protein compare
BWI76_RS21780 -1.5 -2.8 S-(hydroxymethyl)glutathione synthase compare
BWI76_RS05450 -1.5 -0.7 ribonuclease HI compare
BWI76_RS17300 -1.5 -0.9 tRNA-Tyr compare
BWI76_RS15360 -1.5 -2.4 hypothetical protein compare
BWI76_RS26665 -1.5 -3.3 DNA-binding response regulator compare
BWI76_RS01200 -1.5 -1.0 diaminopimelate epimerase compare
BWI76_RS09650 -1.5 -3.9 hypothetical protein compare
BWI76_RS26395 -1.5 -6.5 cell division protein FtsE compare
BWI76_RS27425 -1.5 -1.5 DNA-directed RNA polymerase subunit omega compare
BWI76_RS18695 -1.4 -3.6 GntR family transcriptional regulator compare
BWI76_RS12750 -1.4 -3.0 hypothetical protein compare
BWI76_RS00960 -1.4 -3.6 acetolactate synthase 2 catalytic subunit compare
BWI76_RS07185 -1.4 -0.9 hypothetical protein compare
BWI76_RS09655 -1.4 -4.4 leucine-responsive regulatory protein compare
BWI76_RS14305 -1.4 -3.3 metallophosphoesterase compare
BWI76_RS10575 -1.4 -0.9 polar amino acid ABC transporter permease compare
BWI76_RS18770 -1.4 -1.0 DNA gyrase inhibitor compare
BWI76_RS19685 -1.4 -2.8 lysine transporter compare
BWI76_RS01350 -1.4 -0.8 NAD(P)H-flavin reductase compare
BWI76_RS26570 -1.4 -1.4 anion permease compare
BWI76_RS00240 -1.4 -1.3 FMN-binding protein MioC compare
BWI76_RS25070 -1.3 -1.4 hypothetical protein compare
BWI76_RS13820 -1.3 -1.3 hypothetical protein compare
BWI76_RS12265 -1.3 -3.2 hypothetical protein compare
BWI76_RS22805 -1.3 -6.2 GTP diphosphokinase compare
BWI76_RS23490 -1.3 -4.5 fimbrial protein compare
BWI76_RS15110 -1.3 -2.0 putative excinuclease ABC subunit A compare
BWI76_RS00355 -1.3 -1.4 DNA polymerase I compare
BWI76_RS18455 -1.3 -0.8 tRNA-Ser compare
BWI76_RS25870 -1.3 -1.4 elongation factor Tu compare
BWI76_RS13755 -1.3 -1.6 hypothetical protein compare
BWI76_RS13160 -1.3 -1.4 azoreductase compare
BWI76_RS23285 -1.3 -1.9 hypothetical protein compare
BWI76_RS02775 -1.3 -5.0 outer membrane protein assembly factor compare
BWI76_RS17775 -1.3 -2.4 hypothetical protein compare
BWI76_RS13920 -1.3 -4.0 magnesium-translocating P-type ATPase compare
BWI76_RS01125 -1.3 -4.1 4-alpha-L-fucosyltransferase compare
BWI76_RS12145 -1.2 -1.4 hypothetical protein compare
BWI76_RS01135 -1.2 -4.4 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS26670 -1.2 -6.6 two-component sensor histidine kinase compare
BWI76_RS10930 -1.2 -4.0 glucan biosynthesis protein G compare
BWI76_RS00385 -1.2 -6.2 nitrogen assimilation regulatory protein compare
BWI76_RS16965 -1.2 -2.0 murein lipoprotein compare
BWI76_RS23480 -1.2 -9.7 EAL domain-containing protein compare
BWI76_RS25960 -1.2 -3.0 NUDIX hydrolase compare
BWI76_RS15690 -1.2 -2.6 hypothetical protein compare
BWI76_RS10935 -1.2 -3.1 glucan biosynthesis glucosyltransferase H compare
BWI76_RS10060 -1.2 -1.4 acylphosphatase compare
BWI76_RS02855 -1.2 -2.9 cytochrome B562 compare
BWI76_RS02735 -1.2 -1.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS22695 -1.2 -4.6 sulfate adenylyltransferase compare
BWI76_RS15635 -1.2 -2.1 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms