Experiment set14IT002 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and Iron (II) sulfate heptahydrate 0.002 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS23895 +1.8 1.9 Xaa-Pro aminopeptidase compare
BWI76_RS00140 +1.4 2.6 phosphate transport system regulator PhoU compare
BWI76_RS06925 +1.3 9.9 iron ABC transporter ATP-binding protein FetA compare
BWI76_RS14775 +1.3 2.1 creatinine amidohydrolase compare
BWI76_RS15940 +1.2 2.2 DMSO reductase maturation protein DsmD compare
BWI76_RS14805 +1.2 3.3 hypothetical protein compare
BWI76_RS15845 +1.2 1.5 hypothetical protein compare
BWI76_RS20750 +1.1 1.0 carboxysome structural protein EutK compare
BWI76_RS15435 +1.1 1.4 hypothetical protein compare
BWI76_RS12790 +1.1 1.2 lactate dehydrogenase compare
BWI76_RS17390 +1.0 2.4 DsrE family protein compare
BWI76_RS00025 +1.0 1.3 hypothetical protein compare
BWI76_RS06930 +1.0 4.6 iron export ABC transporter permease subunit FetB compare
BWI76_RS01585 +0.9 4.4 transcriptional regulator compare
BWI76_RS08310 +0.9 2.4 potassium-transporting ATPase subunit C compare
BWI76_RS19240 +0.9 1.9 ABC transporter substrate-binding protein compare
BWI76_RS05790 +0.9 1.4 phage DNA-binding protein compare
BWI76_RS12780 +0.9 2.4 hypothetical protein compare
BWI76_RS12875 +0.9 2.6 bifunctional deaminase-reductase compare
BWI76_RS11790 +0.9 2.4 acyl-CoA thioesterase compare
BWI76_RS06540 +0.9 2.8 DNA-binding protein HU-beta compare
BWI76_RS18430 +0.9 2.7 hypothetical protein compare
BWI76_RS27430 +0.9 0.4 (p)ppGpp synthetase compare
BWI76_RS14835 +0.8 1.5 hypothetical protein compare
BWI76_RS17155 +0.8 1.5 hypothetical protein compare
BWI76_RS15260 +0.8 1.1 hypothetical protein compare
BWI76_RS18165 +0.8 1.2 NUDIX pyrophosphatase compare
BWI76_RS15270 +0.8 3.2 phenazine biosynthesis protein PhzF family compare
BWI76_RS11430 +0.8 0.8 lipoprotein compare
BWI76_RS06465 +0.8 1.6 IclR family transcriptional regulator compare
BWI76_RS16335 +0.8 1.4 division septum protein Blr compare
BWI76_RS17945 +0.8 1.4 hypothetical protein compare
BWI76_RS20230 +0.8 1.2 hypothetical protein compare
BWI76_RS03595 +0.8 1.8 ethanolamine utilization protein EutM compare
BWI76_RS26630 +0.8 3.6 pimeloyl-[acyl-carrier protein] methyl ester esterase compare
BWI76_RS24080 +0.8 1.9 DUF179 domain-containing protein compare
BWI76_RS16760 +0.8 2.4 lipase compare
BWI76_RS20760 +0.8 2.5 ethanolamine ammonia-lyase small subunit compare
BWI76_RS16510 +0.8 2.2 transcriptional repressor PurR compare
BWI76_RS04805 +0.8 2.7 8-oxo-dGTP diphosphatase compare
BWI76_RS08835 +0.8 2.8 molybdopterin guanine dinucleotide biosynthesis protein MoaE compare
BWI76_RS03045 +0.8 1.5 hypothetical protein compare
BWI76_RS10365 +0.8 1.8 class IV aminotransferase compare
BWI76_RS09865 +0.8 2.8 MBL fold hydrolase compare
BWI76_RS12910 +0.8 3.2 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
BWI76_RS19310 +0.8 2.5 ABC transporter permease compare
BWI76_RS09150 +0.8 2.5 DNA-binding transcriptional repressor DeoR compare
BWI76_RS21685 +0.8 0.9 hypothetical protein compare
BWI76_RS19670 +0.7 1.8 S-formylglutathione hydrolase compare
BWI76_RS26405 +0.7 1.5 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS22625 +0.7 1.0 transcriptional regulator compare
BWI76_RS11255 +0.7 1.1 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS15200 +0.7 2.2 glutaminase compare
BWI76_RS07475 +0.7 1.4 DNA-binding transcriptional regulator RamA compare
BWI76_RS24035 +0.7 2.4 hypothetical protein compare
BWI76_RS23705 +0.7 2.6 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS25545 +0.7 2.7 hypothetical protein compare
BWI76_RS23250 +0.7 1.5 hypothetical protein compare
BWI76_RS08515 +0.7 1.6 acyl-CoA thioesterase YbgC compare
BWI76_RS24260 +0.7 2.8 hypothetical protein compare
BWI76_RS14410 +0.7 1.1 hypothetical protein compare
BWI76_RS20795 +0.7 1.2 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS15900 +0.7 2.5 hypothetical protein compare
BWI76_RS11640 +0.7 3.2 ABC transporter membrane protein compare
BWI76_RS12605 +0.7 1.3 hypothetical protein compare
BWI76_RS07725 +0.7 0.9 iron-enterobactin transporter permease compare
BWI76_RS00290 +0.7 4.6 Ribokinase (EC 2.7.1.15) (from data) compare
BWI76_RS06980 +0.7 2.5 ureidoglycolate lyase compare
BWI76_RS08765 +0.7 1.5 8-amino-7-oxononanoate synthase compare
BWI76_RS23020 +0.7 1.2 cobalamin biosynthesis protein CbiQ compare
BWI76_RS24745 +0.7 3.1 membrane protein compare
BWI76_RS16000 +0.7 1.1 multidrug transporter subunit MdtI compare
BWI76_RS23885 +0.7 0.8 2-octaprenylphenol hydroxylase compare
BWI76_RS16980 +0.7 1.5 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS14075 +0.7 0.9 TetR family transcriptional regulator compare
BWI76_RS20390 +0.7 1.3 erythronate-4-phosphate dehydrogenase compare
BWI76_RS15295 +0.7 2.8 MDR efflux pump AcrAB transcriptional activator MarA compare
BWI76_RS24500 +0.7 1.6 urease subunit gamma compare
BWI76_RS04840 +0.7 1.9 prepilin peptidase-dependent pilin compare
BWI76_RS00335 +0.7 2.1 hypothetical protein compare
BWI76_RS18360 +0.7 1.2 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS24070 +0.6 2.5 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
BWI76_RS18810 +0.6 2.5 nitrogenase iron protein compare
BWI76_RS03560 +0.6 3.0 propanediol utilization phosphotransacylase compare
BWI76_RS04895 +0.6 1.7 hypothetical protein compare
BWI76_RS20940 +0.6 1.8 uracil/xanthine transporter compare
BWI76_RS19530 +0.6 2.6 YIP1 family protein compare
BWI76_RS19710 +0.6 1.3 NupC/NupG family nucleoside CNT transporter compare
BWI76_RS23255 +0.6 2.6 prepilin-type cleavage/methylation domain-containing protein compare
BWI76_RS04210 +0.6 2.1 hypothetical protein compare
BWI76_RS05425 +0.6 3.0 EEP domain-containing protein compare
BWI76_RS13590 +0.6 1.2 hypothetical protein compare
BWI76_RS11780 +0.6 2.4 2-deoxyglucose-6-phosphatase compare
BWI76_RS17675 +0.6 1.1 hypothetical protein compare
BWI76_RS17965 +0.6 2.3 MFS transporter compare
BWI76_RS26185 +0.6 1.8 thiosulfate sulfurtransferase compare
BWI76_RS12585 +0.6 2.1 transcriptional regulator compare
BWI76_RS24255 +0.6 2.1 thiol:disulfide oxidoreductase compare
BWI76_RS24810 +0.6 2.1 hypothetical protein compare
BWI76_RS09565 +0.6 2.2 hybrid-cluster NAD(P)-dependent oxidoreductase compare
BWI76_RS10560 +0.6 2.5 gamma-glutamyltransferase compare
BWI76_RS06080 +0.6 2.1 taurine dioxygenase compare
BWI76_RS13435 +0.6 0.7 hypothetical protein compare
BWI76_RS02695 +0.6 3.1 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS01815 +0.6 2.8 phosphate-starvation-inducible protein PsiE compare
BWI76_RS10500 +0.6 1.4 flavoprotein monooxygenase compare
BWI76_RS09195 +0.6 0.7 N-acetyltransferase compare
BWI76_RS20050 +0.6 1.3 hypothetical protein compare
BWI76_RS15075 +0.6 2.7 non-ribosomal peptide synthase compare
BWI76_RS19465 +0.6 0.8 hypothetical protein compare
BWI76_RS14930 +0.6 1.3 hypothetical protein compare
BWI76_RS14670 +0.6 0.8 hypothetical protein compare
BWI76_RS21945 +0.6 1.2 LysR family transcriptional regulator compare
BWI76_RS14965 +0.6 2.9 AraC family transcriptional regulator compare
BWI76_RS00565 +0.6 2.1 branched-chain amino acid transport compare
BWI76_RS23050 +0.6 1.3 cobalt-precorrin-3B C(17)-methyltransferase compare
BWI76_RS06200 +0.6 1.8 hypothetical protein compare
BWI76_RS10400 +0.6 1.6 hypothetical protein compare
BWI76_RS01545 +0.6 2.2 thiamine biosynthesis protein ThiS compare
BWI76_RS20605 +0.6 2.4 purine-nucleoside phosphorylase compare
BWI76_RS00690 +0.6 2.4 transcriptional activator RhaS compare
BWI76_RS16915 +0.6 1.6 alpha/beta hydrolase fold protein compare
BWI76_RS19135 +0.6 2.9 molecular chaperone compare
BWI76_RS11865 +0.6 1.1 phosphatase compare
BWI76_RS06410 +0.6 2.4 YajQ family cyclic di-GMP-binding protein compare
BWI76_RS10330 +0.6 2.2 TetR family transcriptional regulator compare
BWI76_RS23915 +0.6 0.7 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS06120 +0.6 1.5 membrane protein compare
BWI76_RS13405 +0.6 2.3 spermidine/putrescine ABC transporter substrate-binding protein compare
BWI76_RS10890 +0.6 1.8 glyoxylate/hydroxypyruvate reductase A compare
BWI76_RS17100 +0.6 1.0 glutathione peroxidase compare
BWI76_RS23030 +0.6 1.2 cobalamin biosynthesis protein CbiM compare
BWI76_RS06905 +0.6 2.3 Cu+ exporting ATPase compare
BWI76_RS13380 +0.6 1.0 hypothetical protein compare
BWI76_RS05075 +0.6 0.5 type II secretion system protein GspG compare
BWI76_RS06625 +0.6 2.7 acyl-CoA thioesterase II compare
BWI76_RS26280 +0.6 1.8 hypothetical protein compare
BWI76_RS12855 +0.6 0.8 enamine deaminase RidA compare
BWI76_RS19220 +0.6 1.6 hypothetical protein compare
BWI76_RS16805 +0.6 1.5 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS11735 +0.6 1.1 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
BWI76_RS06015 +0.6 0.7 hypothetical protein compare
BWI76_RS15985 +0.5 1.4 LysR family transcriptional regulator compare
BWI76_RS22000 +0.5 2.4 hypothetical protein compare
BWI76_RS01930 +0.5 2.0 acid phosphatase/phosphotransferase compare
BWI76_RS00085 +0.5 2.4 hypothetical protein compare
BWI76_RS23710 +0.5 2.1 3-keto-2-deoxy-D-ribonyl-CoA thiolase (from data) compare
BWI76_RS01995 +0.5 1.1 AraC family transcriptional regulator compare
BWI76_RS11675 +0.5 1.3 arginine N-succinyltransferase compare
BWI76_RS14625 +0.5 1.0 protein TolA compare
BWI76_RS04915 +0.5 1.8 hypothetical protein compare
BWI76_RS16205 +0.5 1.3 NAD(P) transhydrogenase subunit alpha compare
BWI76_RS12620 +0.5 1.7 2-nitropropane dioxygenase compare
BWI76_RS27620 +0.5 2.3 hypothetical protein compare
BWI76_RS19340 +0.5 2.3 xylulokinase compare
BWI76_RS16495 +0.5 1.7 endopeptidase compare
BWI76_RS06325 +0.5 1.2 hypothetical protein compare
BWI76_RS17400 +0.5 0.7 transporter compare
BWI76_RS03040 +0.5 1.1 leucyl aminopeptidase compare
BWI76_RS18580 +0.5 0.8 hypothetical protein compare
BWI76_RS11410 +0.5 1.1 leucine efflux protein compare
BWI76_RS13290 +0.5 2.4 protocatechuate 3,4-dioxygenase subunit beta compare
BWI76_RS15080 +0.5 4.5 hypothetical protein compare
BWI76_RS23560 +0.5 1.8 hypothetical protein compare
BWI76_RS12575 +0.5 1.5 FAD-dependent oxidoreductase compare
BWI76_RS14650 +0.5 1.3 helix-turn-helix transcriptional regulator compare
BWI76_RS19995 +0.5 1.0 IclR family transcriptional regulator compare
BWI76_RS05235 +0.5 0.6 hypothetical protein compare
BWI76_RS24350 +0.5 1.5 quinol monooxygenase compare
BWI76_RS19585 +0.5 1.4 gentisate 1,2-dioxygenase compare
BWI76_RS14730 +0.5 2.2 4-oxalocrotonate tautomerase compare
BWI76_RS22635 +0.5 2.6 MFS transporter compare
BWI76_RS26805 +0.5 1.5 cellulose biosynthesis protein BcsF compare
BWI76_RS23005 +0.5 1.2 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS20430 +0.5 1.9 penicillin-insensitive murein endopeptidase compare
BWI76_RS13680 +0.5 2.4 methyl viologen resistance protein SmvA compare
BWI76_RS10295 +0.5 1.2 short chain dehydrogenase/reductase family oxidoreductase compare
BWI76_RS25375 +0.5 1.7 hypothetical protein compare
BWI76_RS27850 +0.5 1.8 DNA-binding transcriptional regulator DsdC compare
BWI76_RS01010 +0.5 3.1 uridine phosphorylase compare
BWI76_RS07255 +0.5 1.0 hypothetical protein compare
BWI76_RS08390 +0.5 0.9 hypothetical protein compare
BWI76_RS19895 +0.5 1.3 bifunctional transcriptional regulator/O6-methylguanine-DNA methyltransferase compare
BWI76_RS08500 +0.5 0.7 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS17735 +0.5 1.5 D-amino acid dehydrogenase small subunit compare
BWI76_RS19700 +0.5 1.1 deoxyribonuclease IV compare
BWI76_RS07985 +0.5 0.6 fluoride ion transporter CrcB compare
BWI76_RS24155 +0.5 1.9 A/G-specific adenine glycosylase compare
BWI76_RS12825 +0.5 1.3 hypothetical protein compare
BWI76_RS22515 +0.5 1.9 acyl dehydratase compare
BWI76_RS15180 +0.5 2.0 altronate oxidoreductase compare
BWI76_RS21185 +0.5 2.3 hypothetical protein compare
BWI76_RS06130 +0.5 1.0 extensin family protein compare
BWI76_RS19360 +0.5 1.5 glucose dehydrogenase compare
BWI76_RS23165 +0.5 1.8 ATP:cob(I)alamin adenosyltransferase compare
BWI76_RS14045 +0.5 1.9 oxidoreductase compare
BWI76_RS20800 +0.5 1.1 carboxysome shell protein compare
BWI76_RS26165 +0.5 3.2 Glycogen phosphorylase (EC 2.4.1.1) (from data) compare
BWI76_RS06505 +0.5 1.9 hypothetical protein compare
BWI76_RS03515 +0.5 1.6 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms