Experiment set14IT001 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and 2,2'-Dipyridyl 50 uM

200 most important genes:

  gene name fitness t score description  
BWI76_RS18930 -8.6 -4.3 histidinol-phosphate transaminase compare
BWI76_RS20965 -7.5 -3.8 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS18950 -6.9 -3.8 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS18940 -6.5 -5.6 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS11850 -6.4 -7.6 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS01615 -6.1 -8.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS02995 -6.0 -8.3 aspartate carbamoyltransferase compare
BWI76_RS04250 -6.0 -6.1 homoserine kinase compare
BWI76_RS23365 -5.8 -3.1 LysR family transcriptional regulator compare
BWI76_RS20350 -5.5 -6.3 amidophosphoribosyltransferase compare
BWI76_RS20355 -5.5 -3.9 colicin V production protein compare
BWI76_RS00845 -5.5 -9.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS11860 -5.4 -9.1 anthranilate synthase component I compare
BWI76_RS18935 -5.4 -5.9 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS04255 -5.4 -10.9 threonine synthase compare
BWI76_RS00980 -5.3 -12.7 PLP-dependent threonine dehydratase compare
BWI76_RS04470 -5.3 -7.2 carbamoyl phosphate synthase large subunit compare
BWI76_RS18925 -5.2 -6.4 histidinol dehydrogenase compare
BWI76_RS07065 -5.1 -6.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS25870 -5.0 -1.5 elongation factor Tu compare
BWI76_RS16425 -5.0 -2.2 hypothetical protein compare
BWI76_RS21265 -5.0 -10.5 phosphoribosylformylglycinamidine synthase compare
BWI76_RS26460 -4.9 -3.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS27390 -4.9 -7.4 ribonuclease PH compare
BWI76_RS18955 -4.9 -5.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS00990 -4.8 -9.7 ketol-acid reductoisomerase compare
BWI76_RS04245 -4.8 -15.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS00835 -4.7 -13.9 phosphoenolpyruvate carboxylase compare
BWI76_RS00850 -4.7 -7.1 acetylglutamate kinase compare
BWI76_RS27385 -4.7 -6.4 orotate phosphoribosyltransferase compare
BWI76_RS05260 -4.6 -1.3 chaperone compare
BWI76_RS00975 -4.5 -8.7 dihydroxy-acid dehydratase compare
BWI76_RS23220 -4.5 -7.4 amino-acid N-acetyltransferase compare
BWI76_RS00855 -4.4 -9.9 argininosuccinate lyase compare
BWI76_RS25115 -4.4 -8.2 argininosuccinate synthase compare
BWI76_RS23265 -4.3 -1.7 hypothetical protein compare
BWI76_RS04305 -4.3 -1.2 molecular chaperone DnaJ compare
BWI76_RS07070 -4.2 -4.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS04675 -4.2 -7.4 3-isopropylmalate dehydrogenase compare
BWI76_RS10990 -4.2 -1.8 dihydroorotase compare
BWI76_RS11840 -4.2 -5.1 tryptophan synthase subunit alpha compare
BWI76_RS01610 -4.1 -5.6 phosphoribosylamine--glycine ligase compare
BWI76_RS08520 -4.0 -2.0 colicin transporter TolQ compare
BWI76_RS00785 -4.0 -7.6 cystathionine gamma-synthase compare
BWI76_RS05840 -4.0 -2.7 glutamate 5-kinase compare
BWI76_RS22690 -4.0 -2.5 adenylyl-sulfate kinase compare
BWI76_RS17980 -3.9 -3.3 RNA chaperone ProQ compare
BWI76_RS04160 -3.8 -2.6 phosphoserine phosphatase compare
BWI76_RS08385 -3.8 -2.1 citrate (Si)-synthase compare
BWI76_RS03010 -3.8 -6.6 ornithine carbamoyltransferase compare
BWI76_RS09910 -3.8 -12.8 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS04685 -3.8 -8.5 putative leucine operon leader peptide compare
BWI76_RS01115 -3.8 -2.5 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS21450 -3.7 -2.1 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS11855 -3.7 -7.0 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS25335 -3.7 -1.8 stringent starvation protein A compare
BWI76_RS09760 -3.7 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS00805 -3.7 -4.3 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS04240 -3.7 -1.2 thr operon leader peptide compare
BWI76_RS05015 -3.7 -2.1 transcriptional regulator compare
BWI76_RS22760 -3.7 -6.9 sulfite reductase subunit beta compare
BWI76_RS04665 -3.7 -17.3 3-isopropylmalate dehydratase small subunit compare
BWI76_RS22765 -3.7 -8.9 sulfite reductase subunit alpha compare
BWI76_RS00985 -3.6 -6.5 transcriptional regulator IlvY compare
BWI76_RS11965 -3.5 -4.6 orotidine-5'-phosphate decarboxylase compare
BWI76_RS21475 -3.5 -3.2 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS12070 -3.5 -1.0 hypothetical protein compare
BWI76_RS05075 -3.4 -1.0 type II secretion system protein GspG compare
BWI76_RS25645 -3.4 -6.8 shikimate dehydrogenase compare
BWI76_RS04670 -3.3 -8.3 3-isopropylmalate dehydratase large subunit compare
BWI76_RS26455 -3.3 -1.9 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS13755 -3.3 -1.3 hypothetical protein compare
BWI76_RS05835 -3.3 -1.9 gamma-glutamyl-phosphate reductase compare
BWI76_RS21350 -3.3 -2.8 anti-RNA polymerase sigma factor SigE compare
BWI76_RS01655 -3.3 -9.6 homoserine O-succinyltransferase compare
BWI76_RS22755 -3.3 -4.4 phosphoadenosine phosphosulfate reductase compare
BWI76_RS20360 -3.2 -0.9 cell division protein DedD compare
BWI76_RS27915 -3.2 -2.0 YceK/YidQ family lipoprotein compare
BWI76_RS17525 -3.1 -1.8 XshC-Cox1-family protein compare
BWI76_RS02815 -3.1 -2.1 fructose-bisphosphatase class I compare
BWI76_RS26000 -3.0 -6.3 aspartate aminotransferase family protein compare
BWI76_RS01800 -3.0 -2.1 glucose-6-phosphate isomerase compare
BWI76_RS08525 -3.0 -1.3 colicin transporter compare
BWI76_RS26055 -2.9 -7.9 siroheme synthase compare
BWI76_RS21465 -2.9 -5.3 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS26665 -2.9 -3.8 DNA-binding response regulator compare
BWI76_RS20895 -2.8 -3.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS06535 -2.8 -1.9 endopeptidase La compare
BWI76_RS09335 -2.8 -1.1 baseplate assembly protein W compare
BWI76_RS11845 -2.8 -2.0 tryptophan synthase subunit beta compare
BWI76_RS26440 -2.8 -1.3 hypothetical protein compare
BWI76_RS09755 -2.8 -1.9 phosphoserine transaminase compare
BWI76_RS04680 -2.8 -8.0 2-isopropylmalate synthase compare
BWI76_RS08530 -2.7 -1.5 protein TolA compare
BWI76_RS04465 -2.7 -3.2 carbamoyl-phosphate synthase small subunit compare
BWI76_RS21580 -2.7 -1.3 SsrA-binding protein compare
BWI76_RS18920 -2.7 -2.5 ATP phosphoribosyltransferase compare
BWI76_RS08210 -2.6 -1.0 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS23920 -2.6 -2.7 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS24595 -2.6 -3.2 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS14320 -2.6 -1.6 hypothetical protein compare
BWI76_RS00240 -2.6 -1.5 FMN-binding protein MioC compare
BWI76_RS24285 -2.6 -6.3 cystathionine beta-lyase compare
BWI76_RS14300 -2.6 -2.3 hypothetical protein compare
BWI76_RS08535 -2.6 -1.2 translocation protein TolB compare
BWI76_RS24605 -2.6 -5.3 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS16485 -2.6 -1.0 ribonuclease T compare
BWI76_RS20380 -2.5 -0.7 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS15605 -2.5 -2.0 hypothetical protein compare
BWI76_RS02735 -2.5 -2.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS00875 -2.4 -4.7 DNA-binding transcriptional regulator FabR compare
BWI76_RS20640 -2.4 -4.2 cysteine synthase A compare
BWI76_RS21370 -2.4 -0.9 ATP-dependent RNA helicase SrmB compare
BWI76_RS19010 -2.4 -2.3 polysaccharide pyruvyl transferase yvff compare
BWI76_RS09645 -2.4 -0.7 thioredoxin-disulfide reductase compare
BWI76_RS15825 -2.4 -0.9 hypothetical protein compare
BWI76_RS21070 -2.4 -1.6 outer membrane protein assembly factor BamB compare
BWI76_RS25065 -2.4 -3.6 polyribonucleotide nucleotidyltransferase compare
BWI76_RS07465 -2.3 -1.3 TetR family transcriptional regulator compare
BWI76_RS04525 -2.3 -1.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS18605 -2.2 -1.5 oxidoreductase molybdopterin-binding protein compare
BWI76_RS02530 -2.2 -1.4 tRNA dimethylallyltransferase compare
BWI76_RS16965 -2.2 -2.3 murein lipoprotein compare
BWI76_RS08275 -2.2 -1.9 LexA regulated protein compare
BWI76_RS00180 -2.2 -0.9 F0F1 ATP synthase subunit epsilon compare
BWI76_RS01220 -2.1 -4.7 DNA-dependent helicase II compare
BWI76_RS00345 -2.1 -4.3 protein disulfide oxidoreductase DsbA compare
BWI76_RS04100 -2.1 -3.1 peptide chain release factor 3 compare
BWI76_RS19905 -2.1 -3.4 OmpK36 porin compare
BWI76_RS01080 -2.1 -5.5 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS09970 -2.1 -0.7 porin OmpA compare
BWI76_RS06910 -2.1 -1.9 transcriptional regulator compare
BWI76_RS03660 -2.0 -2.9 hypothetical protein compare
BWI76_RS24885 -2.0 -0.9 PTS galactitol transporter subunit IIB compare
BWI76_RS25920 -2.0 -1.4 peptidylprolyl isomerase compare
BWI76_RS17300 -2.0 -0.7 tRNA-Tyr compare
BWI76_RS08040 -2.0 -1.8 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS13820 -2.0 -1.2 hypothetical protein compare
BWI76_RS02775 -1.9 -4.8 outer membrane protein assembly factor compare
BWI76_RS16920 -1.9 -1.0 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS24580 -1.9 -4.1 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS16360 -1.9 -0.9 electron transport complex subunit RsxB compare
BWI76_RS19840 -1.9 -0.5 hypothetical protein compare
BWI76_RS21310 -1.9 -1.2 DNA repair protein RecO compare
BWI76_RS26095 -1.9 -0.7 shikimate kinase compare
BWI76_RS01095 -1.8 -1.6 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS23360 -1.8 -1.4 diaminopimelate decarboxylase compare
BWI76_RS15195 -1.8 -1.1 DUF4186 domain-containing protein compare
BWI76_RS26670 -1.8 -7.4 two-component sensor histidine kinase compare
BWI76_RS20230 -1.8 -1.1 hypothetical protein compare
BWI76_RS09730 -1.8 -0.7 pyruvate formate lyase 1-activating protein compare
BWI76_RS22700 -1.7 -5.3 sulfate adenylyltransferase subunit 2 compare
BWI76_RS16635 -1.7 -4.5 carbonate dehydratase compare
BWI76_RS04645 -1.7 -2.5 3-dehydroquinase compare
BWI76_RS11735 -1.7 -2.1 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
BWI76_RS11980 -1.7 -1.3 DeoR family transcriptional regulator compare
BWI76_RS15530 -1.7 -1.9 hypothetical protein compare
BWI76_RS25060 -1.7 -5.0 lipoprotein NlpI compare
BWI76_RS26620 -1.7 -0.6 Fe-S biogenesis protein NfuA compare
BWI76_RS00385 -1.7 -7.6 nitrogen assimilation regulatory protein compare
BWI76_RS21480 -1.7 -4.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS09655 -1.7 -3.4 leucine-responsive regulatory protein compare
BWI76_RS17400 -1.7 -1.0 transporter compare
BWI76_RS22090 -1.7 -1.7 transcriptional regulator compare
BWI76_RS00715 -1.6 -1.1 two-component sensor histidine kinase compare
BWI76_RS18770 -1.6 -0.9 DNA gyrase inhibitor compare
BWI76_RS24620 -1.6 -2.4 PadR family transcriptional regulator compare
BWI76_RS09190 -1.6 -1.5 hypothetical protein compare
BWI76_RS25300 -1.6 -2.3 hybrid sensor histidine kinase/response regulator compare
BWI76_RS16200 -1.6 -1.2 NAD(P) transhydrogenase subunit beta compare
BWI76_RS01185 -1.6 -1.0 adenylate cyclase compare
BWI76_RS12485 -1.5 -2.4 TyrR family transcriptional regulator compare
BWI76_RS21340 -1.5 -1.3 SoxR reducing system protein RseC compare
BWI76_RS01110 -1.5 -3.3 TDP-fucosamine acetyltransferase compare
BWI76_RS13975 -1.5 -1.6 urea carboxylase compare
BWI76_RS14935 -1.5 -0.9 NIPSNAP family containing protein compare
BWI76_RS05235 -1.5 -0.8 hypothetical protein compare
BWI76_RS15760 -1.5 -1.4 hypothetical protein compare
BWI76_RS12340 -1.5 -3.8 molecular chaperone Tir compare
BWI76_RS00400 -1.5 -0.7 glutamine synthetase compare
BWI76_RS23830 -1.5 -4.1 hypothetical protein compare
BWI76_RS05450 -1.5 -0.5 ribonuclease HI compare
BWI76_RS22805 -1.5 -7.3 GTP diphosphokinase compare
BWI76_RS01275 -1.5 -4.3 LysR family transcriptional regulator compare
BWI76_RS16490 -1.5 -1.1 glutaredoxin compare
BWI76_RS16555 -1.5 -2.3 hypothetical protein compare
BWI76_RS15950 -1.5 -1.0 dethiobiotin synthase compare
BWI76_RS01870 -1.4 -2.8 diacylglycerol kinase compare
BWI76_RS13915 -1.4 -4.8 magnesium transport protein MgtC compare
BWI76_RS14065 -1.4 -1.3 hypothetical protein compare
BWI76_RS19495 -1.4 -0.8 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS00390 -1.4 -4.6 two-component system sensor histidine kinase NtrB compare
BWI76_RS00960 -1.4 -3.1 acetolactate synthase 2 catalytic subunit compare
BWI76_RS21100 -1.4 -1.6 nucleoside-diphosphate kinase compare
BWI76_RS19215 -1.4 -1.1 proline-specific peptidase compare
BWI76_RS17955 -1.4 -2.4 hypothetical protein compare
BWI76_RS24900 -1.4 -0.9 DeoR family transcriptional regulator compare
BWI76_RS20440 -1.4 -1.4 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS10930 -1.4 -4.3 glucan biosynthesis protein G compare
BWI76_RS01200 -1.4 -0.8 diaminopimelate epimerase compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms