Experiment set14H8 for Pseudomonas stutzeri RCH2

Compare to:

Aerobic, no iron sample2

200 most important genes:

  gene name fitness t score description  
Psest_3301 -4.0 -3.9 Predicted transcriptional regulator, BolA superfamily compare
Psest_0062 -3.4 -16.3 tryptophan synthase, alpha subunit compare
Psest_1496 -3.3 -2.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_0063 -3.0 -13.7 tryptophan synthase, beta subunit compare
Psest_0952 -2.7 -4.1 Uncharacterized conserved protein compare
Psest_3415 -2.6 -21.6 hypothetical protein compare
Psest_0718 -2.4 -6.3 nicotinate-nucleotide pyrophosphorylase compare
Psest_0508 -2.4 -11.0 gamma-glutamyl phosphate reductase compare
Psest_4191 -2.3 -1.6 Transcriptional regulator compare
Psest_1509 -2.3 -9.3 quinolinate synthetase complex, A subunit compare
Psest_1473 -2.3 -6.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3384 -2.3 -9.0 glutamate 5-kinase compare
Psest_3647 -2.2 -8.7 Indole-3-glycerol phosphate synthase compare
Psest_2579 -2.1 -2.5 amidophosphoribosyltransferase compare
Psest_3565 -2.1 -2.6 hypothetical protein compare
Psest_3226 -1.9 -1.9 Predicted membrane protein compare
Psest_3416 -1.9 -10.1 Predicted ATPase (AAA+ superfamily) compare
Psest_3998 -1.6 -6.8 glutamate--cysteine ligase compare
Psest_0161 -1.6 -2.6 Membrane-bound metallopeptidase compare
Psest_3420 -1.5 -11.3 Predicted Zn peptidase compare
Psest_2001 -1.5 -1.0 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3351 -1.5 -5.7 peptide chain release factor 3 compare
Psest_3650 -1.4 -9.9 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2104 -1.4 -1.0 IscR-regulated protein YhgI compare
Psest_1012 -1.4 -2.8 Signal transduction histidine kinase compare
Psest_0529 -1.4 -7.9 Putative Mg2+ and Co2+ transporter CorC compare
Psest_0953 -1.4 -7.0 iron-sulfur cluster-binding protein compare
Psest_0515 -1.3 -3.5 rare lipoprotein A compare
Psest_1505 -1.3 -1.4 Organic radical activating enzymes compare
Psest_3648 -1.3 -6.9 anthranilate phosphoribosyltransferase compare
Psest_0954 -1.2 -5.8 Fe-S oxidoreductase compare
Psest_0442 -1.2 -1.8 ATPases of the AAA+ class compare
Psest_2714 -1.2 -1.8 7-cyano-7-deazaguanine reductase compare
Psest_0831 -1.2 -1.7 hypothetical protein compare
Psest_1463 -1.2 -1.7 SufE protein probably involved in Fe-S center assembly compare
Psest_1686 -1.2 -3.3 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0393 -1.1 -7.3 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1870 -1.1 -1.0 Transcriptional regulators compare
Psest_3943 -1.1 -3.8 Phosphoribosyl-AMP cyclohydrolase compare
Psest_1474 -1.1 -0.7 phosphoribosylaminoimidazole synthetase compare
Psest_0279 -1.1 -4.8 methionine biosynthesis protein MetW compare
Psest_0313 -1.1 -4.2 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0152 -1.1 -5.5 Imidazoleglycerol-phosphate dehydratase compare
Psest_3843 -1.0 -5.6 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0955 -1.0 -3.7 D,L-lactate:H+ symporter (from data) compare
Psest_1295 -1.0 -3.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0280 -1.0 -6.8 homoserine O-acetyltransferase compare
Psest_1013 -1.0 -1.0 phosphoribosylamine--glycine ligase compare
Psest_3944 -1.0 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0398 -1.0 -5.9 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_1804 -1.0 -0.7 Superfamily II DNA and RNA helicases compare
Psest_4003 -1.0 -3.2 TIGR00153 family protein compare
Psest_1163 -1.0 -4.3 diguanylate cyclase (GGDEF) domain compare
Psest_1657 -1.0 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0155 -1.0 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3864 -1.0 -7.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_4219 -0.9 -1.9 DNA polymerase I compare
Psest_2333 -0.9 -1.2 Protein of unknown function (DUF3359). compare
Psest_2018 -0.9 -1.9 Uncharacterized conserved protein compare
Psest_0193 -0.9 -1.6 conserved hypothetical protein compare
Psest_1103 -0.9 -2.1 GTP-binding protein YchF compare
Psest_3767 -0.9 -2.8 tyrosine recombinase XerC compare
Psest_3148 -0.9 -1.4 hypothetical protein compare
Psest_2584 -0.9 -3.0 Phosphoribosylanthranilate isomerase compare
Psest_2809 -0.9 -2.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3045 -0.9 -1.0 Cold shock proteins compare
Psest_3878 -0.9 -2.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3910 -0.9 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_1292 -0.9 -4.0 monothiol glutaredoxin, Grx4 family compare
Psest_2324 -0.8 -6.1 hypothetical protein compare
Psest_0186 -0.8 -3.9 Protein-disulfide isomerase compare
Psest_3146 -0.8 -2.0 hypothetical protein compare
Psest_1661 -0.8 -0.9 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0687 -0.8 -4.6 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_4406 -0.8 -1.4 hypothetical protein compare
Psest_0417 -0.7 -2.0 Acyl-CoA dehydrogenases compare
Psest_0082 -0.7 -2.5 Domain of unknown function (DUF892). compare
Psest_3299 -0.7 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2892 -0.7 -2.0 Transcriptional regulator compare
Psest_3112 -0.7 -1.9 electron transport complex, RnfABCDGE type, A subunit compare
Psest_2538 -0.7 -1.1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1816 -0.7 -3.5 hypothetical protein compare
Psest_1656 -0.7 -1.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3159 -0.7 -2.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3298 -0.7 -5.0 histidinol dehydrogenase compare
Psest_2651 -0.7 -1.1 DNA topoisomerase I, bacterial compare
Psest_4363 -0.7 -4.2 ATPases involved in chromosome partitioning compare
Psest_0115 -0.7 -1.4 Predicted integral membrane protein compare
Psest_3927 -0.7 -2.5 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_4097 -0.7 -4.8 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3418 -0.6 -3.6 tRNA nucleotidyltransferase (CCA-adding enzyme) compare
Psest_2325 -0.6 -3.2 alpha-L-glutamate ligase-related protein compare
Psest_4391 -0.6 -5.4 ATPases involved in chromosome partitioning compare
Psest_0785 -0.6 -2.3 Thioredoxin reductase compare
Psest_3212 -0.6 -2.2 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1518 -0.6 -1.1 tRNA_Ser_CGA compare
Psest_2308 -0.6 -0.8 Predicted Fe-S protein compare
Psest_0153 -0.6 -3.8 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_4345 -0.6 -4.4 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3129 -0.6 -0.6 tyrosine recombinase XerD compare
Psest_1582 -0.6 -2.0 Protein of unknown function (DUF3087). compare
Psest_3649 -0.6 -4.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0306 -0.6 -4.9 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_3860 -0.6 -1.5 Predicted permeases compare
Psest_2901 -0.6 -1.3 hypothetical protein compare
Psest_2637 -0.6 -1.1 putative methyltransferase, YaeB/AF_0241 family compare
Psest_1506 -0.6 -2.0 queuosine biosynthesis protein QueC compare
Psest_0097 -0.6 -1.9 phosphonates metabolism transcriptional regulator PhnF compare
Psest_4078 -0.6 -1.3 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_2872 -0.6 -1.0 protein RecA compare
Psest_3297 -0.6 -3.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_4370 -0.6 -2.2 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3177 -0.6 -1.1 hypothetical protein compare
Psest_2988 -0.6 -3.0 aspartate kinase, monofunctional class compare
Psest_3483 -0.6 -3.0 respiratory nitrate reductase, gamma subunit compare
Psest_3080 -0.6 -1.4 AraC-type DNA-binding domain-containing proteins compare
Psest_3449 -0.6 -1.9 DJ-1 family protein compare
Psest_1597 -0.6 -2.2 Protein of unknown function (DUF2933). compare
Psest_0243 -0.6 -1.1 hypothetical protein compare
Psest_0919 -0.5 -1.5 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_0367 -0.5 -1.2 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_1626 -0.5 -2.0 Predicted integral membrane protein compare
Psest_1600 -0.5 -1.2 hypothetical protein compare
Psest_4042 -0.5 -1.3 hypothetical protein compare
Psest_3305 -0.5 -3.0 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1601 -0.5 -1.0 Signal transduction histidine kinase compare
Psest_0312 -0.5 -2.7 Superfamily II DNA and RNA helicases compare
Psest_1532 -0.5 -1.2 DNA recombination-dependent growth factor C compare
Psest_1242 -0.5 -0.8 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0592 -0.5 -2.0 hypothetical protein compare
Psest_3417 -0.5 -2.4 hypothetical protein compare
Psest_1777 -0.5 -2.7 hypothetical protein compare
Psest_3988 -0.5 -3.1 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0021 -0.5 -2.8 ribosomal RNA small subunit methyltransferase RsmB compare
Psest_3367 -0.5 -1.1 translation initation factor SUI1, putative, prokaryotic compare
Psest_0401 -0.5 -1.0 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_1037 -0.5 -1.5 acetolactate synthase, small subunit compare
Psest_4252 -0.5 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_2585 -0.5 -0.7 pseudouridylate synthase I compare
Psest_4396 -0.5 -3.8 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_2520 -0.5 -1.1 Predicted SAM-dependent methyltransferase compare
Psest_0697 -0.5 -1.3 ribosomal protein L9 compare
Psest_1320 -0.5 -3.4 phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein compare
Psest_1115 -0.5 -1.7 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0218 -0.5 -1.6 Acyl-CoA hydrolase compare
Psest_4124 -0.5 -1.7 hypothetical protein compare
Psest_0411 -0.5 -3.4 biotin synthetase compare
Psest_1282 -0.5 -0.9 Amidases related to nicotinamidase compare
Psest_1562 -0.5 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0634 -0.5 -3.1 hypothetical protein compare
Psest_0368 -0.5 -1.2 Transcriptional regulator compare
Psest_3435 -0.5 -2.5 hypothetical protein compare
Psest_3115 -0.5 -2.0 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1259 -0.5 -2.2 23S rRNA m2A2503 methyltransferase compare
Psest_3307 -0.5 -2.7 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1989 -0.5 -2.1 Transcriptional regulators compare
Psest_3960 -0.5 -1.0 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1592 -0.5 -2.3 hypothetical protein compare
Psest_4350 -0.5 -1.5 Transcriptional regulators of sugar metabolism compare
Psest_2681 -0.5 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0631 -0.5 -2.7 Site-specific recombinase XerD compare
Psest_1466 -0.5 -1.8 transcriptional regulator, Spx/MgsR family compare
Psest_2935 -0.5 -1.5 hypothetical protein compare
Psest_0589 -0.5 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_0844 -0.5 -1.2 High-affinity Fe2+/Pb2+ permease compare
Psest_4178 -0.5 -2.2 hypothetical protein compare
Psest_0909 -0.5 -2.7 hypothetical protein compare
Psest_1815 -0.5 -3.5 pseudaminic acid synthase compare
Psest_2411 -0.5 -2.3 PAS domain S-box compare
Psest_1230 -0.5 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_3651 -0.5 -2.2 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3170 -0.5 -1.7 molybdenum cofactor biosynthesis protein MoaC compare
Psest_2053 -0.5 -1.8 Uncharacterized low-complexity proteins compare
Psest_3721 -0.5 -2.7 Malic enzyme compare
Psest_0601 -0.4 -1.2 hypothetical protein compare
Psest_1901 -0.4 -1.7 hypothetical protein compare
Psest_0619 -0.4 -3.1 cation diffusion facilitator family transporter compare
Psest_3117 -0.4 -1.3 electron transport complex, RnfABCDGE type, E subunit compare
Psest_4086 -0.4 -2.9 Transcriptional regulator compare
Psest_4080 -0.4 -2.1 Carbonic anhydrase compare
Psest_0587 -0.4 -1.8 Domain of Unknown Function (DUF326). compare
Psest_0415 -0.4 -1.6 dethiobiotin synthase compare
Psest_0450 -0.4 -2.3 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) compare
Psest_0771 -0.4 -3.1 Acyl-CoA hydrolase compare
Psest_3684 -0.4 -2.7 Di- and tricarboxylate transporters compare
Psest_1888 -0.4 -0.7 Sua5/YciO/YrdC/YwlC family protein compare
Psest_4070 -0.4 -3.3 PAS domain S-box compare
Psest_2110 -0.4 -1.1 hypothetical protein compare
Psest_1527 -0.4 -3.3 Na+/proline symporter compare
Psest_0856 -0.4 -2.2 Predicted oxidoreductase compare
Psest_3962 -0.4 -1.0 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_3178 -0.4 -0.9 formyltetrahydrofolate deformylase compare
Psest_1313 -0.4 -0.7 Uncharacterized conserved small protein compare
Psest_2148 -0.4 -1.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3979 -0.4 -1.7 Fructose-2,6-bisphosphatase compare
Psest_3039 -0.4 -0.9 periplasmic nitrate reductase, NapE protein compare
Psest_3323 -0.4 -2.0 ribonuclease, Rne/Rng family compare
Psest_0853 -0.4 -1.5 6-phosphogluconolactonase compare
Psest_3008 -0.4 -1.8 cobyric acid synthase CobQ compare
Psest_2885 -0.4 -1.4 Acyl carrier protein compare


Specific Phenotypes

For 3 genes in this experiment

For metal limitation Kanamycin sulfate in Pseudomonas stutzeri RCH2

For metal limitation Kanamycin sulfate across organisms