Experiment set14H7 for Pseudomonas stutzeri RCH2

Compare to:

Aerobic, no iron sample1

200 most important genes:

  gene name fitness t score description  
Psest_0062 -3.8 -17.3 tryptophan synthase, alpha subunit compare
Psest_0063 -3.5 -12.6 tryptophan synthase, beta subunit compare
Psest_0718 -3.4 -6.1 nicotinate-nucleotide pyrophosphorylase compare
Psest_3415 -3.1 -21.7 hypothetical protein compare
Psest_1473 -2.6 -8.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0508 -2.5 -10.9 gamma-glutamyl phosphate reductase compare
Psest_3384 -2.2 -8.4 glutamate 5-kinase compare
Psest_3351 -2.0 -6.6 peptide chain release factor 3 compare
Psest_2579 -2.0 -3.0 amidophosphoribosyltransferase compare
Psest_1509 -1.9 -9.3 quinolinate synthetase complex, A subunit compare
Psest_3226 -1.9 -1.8 Predicted membrane protein compare
Psest_3647 -1.9 -6.1 Indole-3-glycerol phosphate synthase compare
Psest_3416 -1.8 -8.5 Predicted ATPase (AAA+ superfamily) compare
Psest_3998 -1.8 -6.9 glutamate--cysteine ligase compare
Psest_1686 -1.7 -5.4 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3301 -1.7 -2.2 Predicted transcriptional regulator, BolA superfamily compare
Psest_3843 -1.7 -7.3 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3927 -1.6 -4.4 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2104 -1.4 -1.0 IscR-regulated protein YhgI compare
Psest_1496 -1.4 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_3420 -1.4 -10.2 Predicted Zn peptidase compare
Psest_3650 -1.4 -9.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2585 -1.4 -1.1 pseudouridylate synthase I compare
Psest_3766 -1.3 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_4219 -1.3 -2.1 DNA polymerase I compare
Psest_2945 -1.3 -0.8 septum site-determining protein MinC compare
Psest_4191 -1.3 -2.0 Transcriptional regulator compare
Psest_0515 -1.2 -3.6 rare lipoprotein A compare
Psest_1013 -1.2 -0.8 phosphoribosylamine--glycine ligase compare
Psest_0442 -1.2 -1.9 ATPases of the AAA+ class compare
Psest_1657 -1.2 -1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2872 -1.1 -1.9 protein RecA compare
Psest_3648 -1.1 -6.1 anthranilate phosphoribosyltransferase compare
Psest_4406 -1.1 -2.7 hypothetical protein compare
Psest_0529 -1.1 -6.1 Putative Mg2+ and Co2+ transporter CorC compare
Psest_0398 -1.1 -5.9 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_0953 -1.1 -6.1 iron-sulfur cluster-binding protein compare
Psest_0952 -1.0 -2.6 Uncharacterized conserved protein compare
Psest_3367 -1.0 -1.8 translation initation factor SUI1, putative, prokaryotic compare
Psest_1804 -1.0 -0.7 Superfamily II DNA and RNA helicases compare
Psest_0954 -1.0 -4.6 Fe-S oxidoreductase compare
Psest_2018 -1.0 -2.1 Uncharacterized conserved protein compare
Psest_3146 -1.0 -2.0 hypothetical protein compare
Psest_1295 -1.0 -3.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3159 -1.0 -2.5 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2584 -1.0 -4.6 Phosphoribosylanthranilate isomerase compare
Psest_0498 -1.0 -0.6 ribosome small subunit-dependent GTPase A compare
Psest_3864 -1.0 -7.2 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_1306 -0.9 -1.8 hypothetical protein compare
Psest_2766 -0.9 -1.3 hypothetical protein compare
Psest_0279 -0.9 -4.3 methionine biosynthesis protein MetW compare
Psest_0152 -0.9 -3.4 Imidazoleglycerol-phosphate dehydratase compare
Psest_2651 -0.9 -1.2 DNA topoisomerase I, bacterial compare
Psest_0155 -0.9 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0280 -0.9 -6.6 homoserine O-acetyltransferase compare
Psest_4252 -0.9 -4.0 Uncharacterized protein conserved in bacteria compare
Psest_1029 -0.9 -2.5 Regulator of competence-specific genes compare
Psest_0193 -0.9 -1.3 conserved hypothetical protein compare
Psest_0393 -0.9 -5.3 Methylase of chemotaxis methyl-accepting proteins compare
Psest_2983 -0.8 -2.4 hypothetical protein compare
Psest_2946 -0.8 -1.4 septum site-determining protein MinD compare
Psest_0915 -0.8 -4.0 hypothetical protein compare
Psest_3988 -0.8 -4.4 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_3113 -0.8 -1.4 electron transport complex, RnfABCDGE type, B subunit compare
Psest_4098 -0.8 -2.2 Superfamily I DNA and RNA helicases compare
Psest_2304 -0.8 -0.9 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_3298 -0.8 -5.5 histidinol dehydrogenase compare
Psest_1480 -0.8 -2.1 arsenate reductase (glutaredoxin) compare
Psest_0313 -0.8 -2.0 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0687 -0.8 -4.5 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_4363 -0.8 -4.6 ATPases involved in chromosome partitioning compare
Psest_3045 -0.8 -1.1 Cold shock proteins compare
Psest_3943 -0.8 -2.7 Phosphoribosyl-AMP cyclohydrolase compare
Psest_1474 -0.8 -1.6 phosphoribosylaminoimidazole synthetase compare
Psest_3299 -0.8 -5.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_1282 -0.8 -1.3 Amidases related to nicotinamidase compare
Psest_3092 -0.8 -1.1 ribonuclease III, bacterial compare
Psest_2067 -0.7 -1.1 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1656 -0.7 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_4003 -0.7 -3.1 TIGR00153 family protein compare
Psest_3112 -0.7 -2.1 electron transport complex, RnfABCDGE type, A subunit compare
Psest_1103 -0.7 -1.8 GTP-binding protein YchF compare
Psest_1884 -0.7 -1.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3418 -0.7 -3.8 tRNA nucleotidyltransferase (CCA-adding enzyme) compare
Psest_0697 -0.7 -1.6 ribosomal protein L9 compare
Psest_3960 -0.7 -1.4 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0260 -0.7 -1.2 Cell division protein compare
Psest_2864 -0.7 -3.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1259 -0.7 -2.9 23S rRNA m2A2503 methyltransferase compare
Psest_4170 -0.6 -1.3 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_1163 -0.6 -2.4 diguanylate cyclase (GGDEF) domain compare
Psest_1677 -0.6 -2.1 Protein-tyrosine-phosphatase compare
Psest_1292 -0.6 -3.1 monothiol glutaredoxin, Grx4 family compare
Psest_0153 -0.6 -4.5 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2150 -0.6 -1.1 DNA polymerase LigD, polymerase domain compare
Psest_0969 -0.6 -0.8 transcription elongation factor GreA compare
Psest_0507 -0.6 -3.0 Uncharacterized membrane-associated protein compare
Psest_3056 -0.6 -1.8 hypothetical protein compare
Psest_0218 -0.6 -2.1 Acyl-CoA hydrolase compare
Psest_2988 -0.6 -3.2 aspartate kinase, monofunctional class compare
Psest_3270 -0.6 -1.3 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_0175 -0.6 -3.1 Xaa-Pro aminopeptidase compare
Psest_0161 -0.6 -1.1 Membrane-bound metallopeptidase compare
Psest_1975 -0.6 -3.3 Predicted transcriptional regulators compare
Psest_2324 -0.6 -4.3 hypothetical protein compare
Psest_2148 -0.6 -1.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0312 -0.6 -3.2 Superfamily II DNA and RNA helicases compare
Psest_3478 -0.6 -1.2 Cytochrome B561 compare
Psest_1505 -0.6 -1.0 Organic radical activating enzymes compare
Psest_0277 -0.6 -1.0 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0872 -0.6 -0.9 Helix-turn-helix. compare
Psest_3297 -0.6 -4.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_2847 -0.5 -2.3 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_3693 -0.5 -1.9 Glycosyltransferases involved in cell wall biogenesis compare
Psest_0296 -0.5 -3.4 glutathione synthetase, prokaryotic compare
Psest_2285 -0.5 -1.2 ATP-dependent protease La compare
Psest_1111 -0.5 -1.5 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_0306 -0.5 -4.5 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_1610 -0.5 -2.5 hypothetical protein compare
Psest_0708 -0.5 -0.6 outer membrane assembly lipoprotein YfiO compare
Psest_0852 -0.5 -2.6 glucose-6-phosphate 1-dehydrogenase compare
Psest_3944 -0.5 -1.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0259 -0.5 -1.0 cell division ATP-binding protein FtsE compare
Psest_0359 -0.5 -1.9 Transcriptional regulators compare
Psest_4151 -0.5 -1.4 Flagellar hook capping protein compare
Psest_1733 -0.5 -1.9 flagellar biosynthetic protein FliQ compare
Psest_0411 -0.5 -3.6 biotin synthetase compare
Psest_2062 -0.5 -1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2325 -0.5 -3.1 alpha-L-glutamate ligase-related protein compare
Psest_3908 -0.5 -1.1 Cytochrome c553 compare
Psest_1037 -0.5 -1.5 acetolactate synthase, small subunit compare
Psest_4298 -0.5 -0.8 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0426 -0.5 -2.6 Transposase and inactivated derivatives compare
Psest_3417 -0.5 -2.3 hypothetical protein compare
Psest_2901 -0.5 -1.2 hypothetical protein compare
Psest_2940 -0.5 -1.5 Predicted membrane protein compare
Psest_2348 -0.5 -2.0 urea carboxylase-associated protein 2 compare
Psest_2670 -0.5 -1.4 Uncharacterized conserved protein compare
Psest_1506 -0.5 -1.8 queuosine biosynthesis protein QueC compare
Psest_2911 -0.5 -1.3 Protein of unknown function (DUF2945). compare
Psest_1920 -0.5 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_2714 -0.5 -0.8 7-cyano-7-deazaguanine reductase compare
Psest_1582 -0.5 -1.0 Protein of unknown function (DUF3087). compare
Psest_2411 -0.5 -2.5 PAS domain S-box compare
Psest_3449 -0.5 -1.0 DJ-1 family protein compare
Psest_3931 -0.5 -2.4 Signal transduction histidine kinase, nitrogen specific compare
Psest_3212 -0.5 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_4178 -0.5 -1.7 hypothetical protein compare
Psest_0722 -0.5 -2.2 Predicted ATPase compare
Psest_2468 -0.5 -2.6 uncharacterized domain 1 compare
Psest_0174 -0.5 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_2268 -0.4 -1.8 Alcohol dehydrogenase, class IV compare
Psest_0310 -0.4 -1.5 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_0514 -0.4 -2.4 lytic murein transglycosylase B compare
Psest_0120 -0.4 -2.5 hypothetical protein compare
Psest_1863 -0.4 -1.0 hypothetical protein compare
Psest_2561 -0.4 -0.6 hypothetical protein compare
Psest_0413 -0.4 -2.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_1195 -0.4 -1.5 xanthine permease compare
Psest_3400 -0.4 -0.7 Copper resistance protein D. compare
Psest_0831 -0.4 -0.8 hypothetical protein compare
Psest_2339 -0.4 -2.4 transcription elongation factor GreB compare
Psest_1486 -0.4 -1.4 hypothetical protein compare
Psest_3002 -0.4 -1.1 Putative translation initiation inhibitor, yjgF family compare
Psest_0958 -0.4 -1.8 Oligoketide cyclase/lipid transport protein compare
Psest_0633 -0.4 -3.0 Phage integrase family. compare
Psest_2500 -0.4 -1.8 hypothetical protein compare
Psest_0652 -0.4 -1.8 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_2276 -0.4 -2.4 Aldehyde dehydrogenase (EC 1.2.1.3) (from data) compare
Psest_2894 -0.4 -1.1 addiction module antidote protein, HigA family compare
Psest_3659 -0.4 -1.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0632 -0.4 -2.0 hypothetical protein compare
Psest_4391 -0.4 -3.7 ATPases involved in chromosome partitioning compare
Psest_1354 -0.4 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_4097 -0.4 -3.4 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3664 -0.4 -0.3 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_2566 -0.4 -0.6 Uncharacterized protein conserved in bacteria compare
Psest_3039 -0.4 -0.9 periplasmic nitrate reductase, NapE protein compare
Psest_4345 -0.4 -3.0 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_0568 -0.4 -1.6 pseudouridine synthase compare
Psest_3435 -0.4 -2.4 hypothetical protein compare
Psest_2580 -0.4 -1.6 Uncharacterized membrane protein, required for colicin V production compare
Psest_2282 -0.4 -1.6 Dihydroorotate dehydrogenase compare
Psest_3827 -0.4 -1.6 Transcriptional regulator compare
Psest_3810 -0.4 -0.3 orotate phosphoribosyltransferase compare
Psest_0691 -0.4 -3.1 ribonuclease R compare
Psest_4128 -0.4 -1.0 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2061 -0.4 -1.8 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_3744 -0.4 -2.5 Disulfide bond formation protein DsbB compare
Psest_3537 -0.4 -1.9 hypothetical protein compare
Psest_3304 -0.4 -1.8 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3809 -0.4 -1.7 hypothetical protein compare
Psest_3914 -0.4 -2.3 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0412 -0.4 -2.5 8-amino-7-oxononanoate synthase compare
Psest_0921 -0.4 -2.6 AraC-type DNA-binding domain-containing proteins compare
Psest_3995 -0.4 -1.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3317 -0.4 -1.8 Phosphotransferase System HPr (HPr) Family compare
Psest_1679 -0.4 -0.7 ribonuclease, Rne/Rng family compare
Psest_2935 -0.4 -0.9 hypothetical protein compare
Psest_3150 -0.4 -2.0 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For metal limitation Kanamycin sulfate in Pseudomonas stutzeri RCH2

For metal limitation Kanamycin sulfate across organisms