Experiment set14H6 for Pseudomonas stutzeri RCH2

Compare to:

Aerobic, with iron sample3

200 most important genes:

  gene name fitness t score description  
Psest_1473 -4.9 -7.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0508 -4.4 -13.6 gamma-glutamyl phosphate reductase compare
Psest_0063 -4.3 -14.8 tryptophan synthase, beta subunit compare
Psest_3384 -4.0 -11.7 glutamate 5-kinase compare
Psest_0718 -3.6 -6.9 nicotinate-nucleotide pyrophosphorylase compare
Psest_0062 -3.5 -14.4 tryptophan synthase, alpha subunit compare
Psest_1509 -3.1 -12.1 quinolinate synthetase complex, A subunit compare
Psest_3648 -3.1 -11.9 anthranilate phosphoribosyltransferase compare
Psest_3650 -3.0 -18.0 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3647 -3.0 -6.7 Indole-3-glycerol phosphate synthase compare
Psest_0280 -2.9 -15.5 homoserine O-acetyltransferase compare
Psest_2584 -2.8 -8.6 Phosphoribosylanthranilate isomerase compare
Psest_3301 -2.7 -4.9 Predicted transcriptional regulator, BolA superfamily compare
Psest_1295 -2.7 -4.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0193 -2.7 -2.3 conserved hypothetical protein compare
Psest_2579 -2.6 -2.5 amidophosphoribosyltransferase compare
Psest_0279 -2.4 -8.2 methionine biosynthesis protein MetW compare
Psest_0687 -2.2 -10.0 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0155 -2.2 -8.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3226 -2.1 -2.0 Predicted membrane protein compare
Psest_3351 -2.1 -7.2 peptide chain release factor 3 compare
Psest_0952 -2.1 -3.6 Uncharacterized conserved protein compare
Psest_3299 -2.1 -13.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_1686 -2.0 -7.0 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0954 -1.9 -7.6 Fe-S oxidoreductase compare
Psest_3843 -1.9 -7.4 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3864 -1.9 -12.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0152 -1.9 -6.1 Imidazoleglycerol-phosphate dehydratase compare
Psest_1496 -1.9 -1.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_4191 -1.8 -1.8 Transcriptional regulator compare
Psest_0953 -1.8 -10.4 iron-sulfur cluster-binding protein compare
Psest_0393 -1.8 -9.7 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3943 -1.8 -6.4 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3298 -1.8 -11.0 histidinol dehydrogenase compare
Psest_0398 -1.7 -7.8 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_2578 -1.7 -11.3 O-succinylhomoserine sulfhydrylase compare
Psest_1012 -1.6 -3.2 Signal transduction histidine kinase compare
Psest_0153 -1.6 -9.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2324 -1.5 -11.3 hypothetical protein compare
Psest_0313 -1.5 -4.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3944 -1.5 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_2308 -1.4 -1.0 Predicted Fe-S protein compare
Psest_1474 -1.4 -1.3 phosphoribosylaminoimidazole synthetase compare
Psest_3998 -1.4 -5.8 glutamate--cysteine ligase compare
Psest_3565 -1.4 -2.2 hypothetical protein compare
Psest_2872 -1.4 -1.8 protein RecA compare
Psest_2325 -1.3 -5.8 alpha-L-glutamate ligase-related protein compare
Psest_2104 -1.3 -1.4 IscR-regulated protein YhgI compare
Psest_4406 -1.2 -1.7 hypothetical protein compare
Psest_4363 -1.2 -6.2 ATPases involved in chromosome partitioning compare
Psest_1804 -1.2 -1.1 Superfamily II DNA and RNA helicases compare
Psest_1013 -1.2 -1.4 phosphoribosylamine--glycine ligase compare
Psest_2766 -1.2 -1.7 hypothetical protein compare
Psest_0529 -1.2 -6.6 Putative Mg2+ and Co2+ transporter CorC compare
Psest_0697 -1.2 -2.9 ribosomal protein L9 compare
Psest_3767 -1.2 -3.5 tyrosine recombinase XerC compare
Psest_3112 -1.1 -3.3 electron transport complex, RnfABCDGE type, A subunit compare
Psest_1518 -1.1 -2.5 tRNA_Ser_CGA compare
Psest_0442 -1.1 -1.9 ATPases of the AAA+ class compare
Psest_2945 -1.1 -1.0 septum site-determining protein MinC compare
Psest_2285 -1.1 -2.2 ATP-dependent protease La compare
Psest_0831 -1.1 -1.7 hypothetical protein compare
Psest_3766 -1.1 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_2651 -1.1 -1.7 DNA topoisomerase I, bacterial compare
Psest_0955 -1.1 -4.7 D,L-lactate:H+ symporter (from data) compare
Psest_2809 -1.1 -2.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3113 -1.0 -1.3 electron transport complex, RnfABCDGE type, B subunit compare
Psest_3988 -1.0 -5.5 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_2018 -1.0 -2.2 Uncharacterized conserved protein compare
Psest_0498 -1.0 -0.6 ribosome small subunit-dependent GTPase A compare
Psest_3317 -1.0 -4.0 Phosphotransferase System HPr (HPr) Family compare
Psest_0411 -1.0 -7.3 biotin synthetase compare
Psest_0969 -1.0 -1.3 transcription elongation factor GreA compare
Psest_3862 -1.0 -7.6 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3480 -1.0 -2.4 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1056 -1.0 -2.0 2-isopropylmalate synthase, bacterial type compare
Psest_0306 -0.9 -7.6 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_4124 -0.9 -2.6 hypothetical protein compare
Psest_0415 -0.9 -3.8 dethiobiotin synthase compare
Psest_1765 -0.9 -4.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2988 -0.9 -5.2 aspartate kinase, monofunctional class compare
Psest_1655 -0.9 -2.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3159 -0.9 -3.1 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2810 -0.9 -3.3 5'/3'-nucleotidase SurE compare
Psest_2114 -0.9 -3.7 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3044 -0.9 -3.6 deoxycytidine triphosphate deaminase compare
Psest_2981 -0.9 -1.3 sodium pump decarboxylases, gamma subunit compare
Psest_3546 -0.9 -1.4 Phosphatidylglycerophosphatase A and related proteins compare
Psest_4097 -0.8 -6.4 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1724 -0.8 -2.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3910 -0.8 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_2855 -0.8 -1.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_2304 -0.8 -1.0 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2590 -0.8 -1.2 3-isopropylmalate dehydratase, small subunit compare
Psest_2323 -0.8 -5.5 Uncharacterized protein conserved in archaea compare
Psest_0257 -0.8 -2.4 Predicted Zn-dependent peptidases compare
Psest_2933 -0.8 -5.6 Signal transduction histidine kinase compare
Psest_0609 -0.8 -1.7 hypothetical protein compare
Psest_0413 -0.8 -4.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0414 -0.8 -3.1 biotin biosynthesis protein BioC compare
Psest_2411 -0.8 -4.5 PAS domain S-box compare
Psest_3927 -0.8 -3.1 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2333 -0.8 -1.1 Protein of unknown function (DUF3359). compare
Psest_0412 -0.8 -5.0 8-amino-7-oxononanoate synthase compare
Psest_3303 -0.7 -3.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3042 -0.7 -1.1 Nitrate reductase cytochrome c-type subunit compare
Psest_0312 -0.7 -3.2 Superfamily II DNA and RNA helicases compare
Psest_3721 -0.7 -4.7 Malic enzyme compare
Psest_1679 -0.7 -1.4 ribonuclease, Rne/Rng family compare
Psest_2538 -0.7 -1.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0191 -0.7 -0.7 PAS domain S-box compare
Psest_1692 -0.7 -4.4 conserved hypothetical protein, YceG family compare
Psest_2048 -0.7 -2.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3307 -0.7 -4.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0845 -0.7 -0.6 hypothetical protein compare
Psest_0326 -0.7 -5.6 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_1920 -0.7 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_0297 -0.7 -2.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1463 -0.7 -1.2 SufE protein probably involved in Fe-S center assembly compare
Psest_4142 -0.7 -1.5 hypothetical protein compare
Psest_0515 -0.7 -1.4 rare lipoprotein A compare
Psest_3045 -0.7 -1.4 Cold shock proteins compare
Psest_3323 -0.7 -3.1 ribonuclease, Rne/Rng family compare
Psest_1879 -0.7 -1.5 Trk-type K+ transport systems, membrane components compare
Psest_0958 -0.6 -2.6 Oligoketide cyclase/lipid transport protein compare
Psest_3297 -0.6 -4.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_4345 -0.6 -4.3 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3649 -0.6 -3.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3060 -0.6 -2.9 hypothetical protein compare
Psest_4393 -0.6 -3.0 Capsule polysaccharide export protein compare
Psest_1163 -0.6 -2.8 diguanylate cyclase (GGDEF) domain compare
Psest_0218 -0.6 -2.0 Acyl-CoA hydrolase compare
Psest_4405 -0.6 -1.2 hypothetical protein compare
Psest_2643 -0.6 -1.1 Beta-glucosidase-related glycosidases compare
Psest_3931 -0.6 -3.2 Signal transduction histidine kinase, nitrogen specific compare
Psest_0367 -0.6 -2.0 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_0161 -0.6 -1.4 Membrane-bound metallopeptidase compare
Psest_1457 -0.6 -1.3 FOG: Ankyrin repeat compare
Psest_3853 -0.6 -1.6 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_0175 -0.6 -2.9 Xaa-Pro aminopeptidase compare
Psest_3288 -0.6 -4.9 type IV-A pilus assembly ATPase PilB compare
Psest_1505 -0.6 -1.0 Organic radical activating enzymes compare
Psest_1103 -0.6 -1.6 GTP-binding protein YchF compare
Psest_2591 -0.6 -2.0 3-isopropylmalate dehydratase, large subunit compare
Psest_3212 -0.6 -2.2 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3180 -0.6 -3.8 Exonuclease I compare
Psest_4350 -0.6 -2.1 Transcriptional regulators of sugar metabolism compare
Psest_4070 -0.6 -4.5 PAS domain S-box compare
Psest_0691 -0.6 -4.3 ribonuclease R compare
Psest_4051 -0.6 -1.9 molybdenum-pterin binding domain compare
Psest_1643 -0.6 -0.9 hypothetical protein compare
Psest_0491 -0.6 -4.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_2026 -0.6 -4.1 Uncharacterized conserved protein compare
Psest_3806 -0.6 -3.5 Phosphomannomutase compare
Psest_4149 -0.5 -1.9 fagellar hook-basal body proteins compare
Psest_4086 -0.5 -3.8 Transcriptional regulator compare
Psest_1975 -0.5 -2.9 Predicted transcriptional regulators compare
Psest_3305 -0.5 -3.4 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3415 -0.5 -4.8 hypothetical protein compare
Psest_2645 -0.5 -3.3 Transcriptional regulator compare
Psest_2864 -0.5 -2.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1498 -0.5 -1.3 tol-pal system-associated acyl-CoA thioesterase compare
Psest_0507 -0.5 -3.3 Uncharacterized membrane-associated protein compare
Psest_1115 -0.5 -1.7 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1195 -0.5 -2.3 xanthine permease compare
Psest_1999 -0.5 -0.9 pseudouridine synthase compare
Psest_3322 -0.5 -4.7 TIGR02099 family protein compare
Psest_3414 -0.5 -3.3 hypothetical protein compare
Psest_3115 -0.5 -2.4 electron transport complex, RnfABCDGE type, D subunit compare
Psest_0212 -0.5 -1.0 exodeoxyribonuclease V, gamma subunit compare
Psest_3170 -0.5 -3.0 molybdenum cofactor biosynthesis protein MoaC compare
Psest_2748 -0.5 -1.4 Transcriptional regulator compare
Psest_2290 -0.5 -2.4 MoxR-like ATPases compare
Psest_3148 -0.5 -0.9 hypothetical protein compare
Psest_3813 -0.5 -3.6 ribonuclease PH compare
Psest_0759 -0.5 -0.8 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_1486 -0.5 -1.8 hypothetical protein compare
Psest_2946 -0.5 -1.2 septum site-determining protein MinD compare
Psest_0402 -0.5 -2.1 glycosyltransferase, MGT family compare
Psest_3008 -0.5 -1.7 cobyric acid synthase CobQ compare
Psest_0951 -0.5 -3.2 FAD/FMN-containing dehydrogenases compare
Psest_2605 -0.5 -1.6 transcriptional activator RfaH compare
Psest_0678 -0.5 -2.4 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_3304 -0.5 -2.3 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_1249 -0.5 -2.1 serine O-acetyltransferase compare
Psest_0120 -0.5 -2.6 hypothetical protein compare
Psest_0998 -0.5 -1.2 poly(A) polymerase compare
Psest_0722 -0.5 -2.3 Predicted ATPase compare
Psest_1506 -0.5 -2.0 queuosine biosynthesis protein QueC compare
Psest_0828 -0.5 -2.6 Nitric oxide reductase activation protein compare
Psest_3810 -0.5 -0.3 orotate phosphoribosyltransferase compare
Psest_1320 -0.5 -2.2 phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein compare
Psest_2845 -0.5 -3.6 [Protein-PII] uridylyltransferase compare
Psest_0632 -0.5 -1.9 hypothetical protein compare
Psest_1762 -0.5 -1.4 cytochrome c-type biogenesis protein CcmI compare
Psest_1704 -0.5 -0.7 Dehydrogenases (flavoproteins) compare
Psest_2037 -0.5 -2.1 uroporphyrin-III C-methyltransferase compare
Psest_3420 -0.5 -3.8 Predicted Zn peptidase compare
Psest_4252 -0.5 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_2580 -0.5 -1.7 Uncharacterized membrane protein, required for colicin V production compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments

For metal limitation Kanamycin sulfate across organisms