Experiment set14H5 for Pseudomonas stutzeri RCH2

Compare to:

Aerobic, with iron sample2

200 most important genes:

  gene name fitness t score description  
Psest_1473 -3.9 -8.6 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3226 -3.6 -2.2 Predicted membrane protein compare
Psest_0063 -3.5 -15.0 tryptophan synthase, beta subunit compare
Psest_0062 -3.5 -14.4 tryptophan synthase, alpha subunit compare
Psest_0718 -3.0 -6.9 nicotinate-nucleotide pyrophosphorylase compare
Psest_3384 -2.7 -10.9 glutamate 5-kinase compare
Psest_3647 -2.7 -8.4 Indole-3-glycerol phosphate synthase compare
Psest_0508 -2.5 -12.7 gamma-glutamyl phosphate reductase compare
Psest_0952 -2.4 -3.8 Uncharacterized conserved protein compare
Psest_2579 -2.3 -2.7 amidophosphoribosyltransferase compare
Psest_1509 -2.3 -11.2 quinolinate synthetase complex, A subunit compare
Psest_0515 -2.1 -4.3 rare lipoprotein A compare
Psest_3650 -2.1 -13.7 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0280 -2.0 -11.6 homoserine O-acetyltransferase compare
Psest_0954 -1.9 -9.9 Fe-S oxidoreductase compare
Psest_1295 -1.8 -4.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2584 -1.8 -7.4 Phosphoribosylanthranilate isomerase compare
Psest_0313 -1.8 -5.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0953 -1.8 -8.7 iron-sulfur cluster-binding protein compare
Psest_3301 -1.7 -2.7 Predicted transcriptional regulator, BolA superfamily compare
Psest_3648 -1.7 -8.9 anthranilate phosphoribosyltransferase compare
Psest_4191 -1.7 -2.2 Transcriptional regulator compare
Psest_3843 -1.6 -6.7 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_2067 -1.6 -1.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0279 -1.6 -6.8 methionine biosynthesis protein MetW compare
Psest_4219 -1.6 -2.5 DNA polymerase I compare
Psest_0393 -1.6 -7.7 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0155 -1.4 -7.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3148 -1.4 -1.9 hypothetical protein compare
Psest_2651 -1.4 -1.3 DNA topoisomerase I, bacterial compare
Psest_3351 -1.3 -5.6 peptide chain release factor 3 compare
Psest_1012 -1.3 -2.7 Signal transduction histidine kinase compare
Psest_3998 -1.3 -5.5 glutamate--cysteine ligase compare
Psest_1474 -1.3 -0.9 phosphoribosylaminoimidazole synthetase compare
Psest_1686 -1.3 -4.7 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2104 -1.3 -1.4 IscR-regulated protein YhgI compare
Psest_0558 -1.3 -1.2 urease, beta subunit compare
Psest_1704 -1.3 -1.2 Dehydrogenases (flavoproteins) compare
Psest_1013 -1.3 -1.2 phosphoribosylamine--glycine ligase compare
Psest_1496 -1.3 -1.4 Holliday junction DNA helicase, RuvA subunit compare
Psest_4003 -1.2 -4.6 TIGR00153 family protein compare
Psest_2285 -1.2 -2.2 ATP-dependent protease La compare
Psest_3803 -1.2 -2.5 DNA repair protein radc compare
Psest_1657 -1.2 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3299 -1.2 -7.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0831 -1.2 -1.8 hypothetical protein compare
Psest_3864 -1.1 -8.2 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3927 -1.1 -4.3 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_1518 -1.1 -2.2 tRNA_Ser_CGA compare
Psest_3159 -1.1 -3.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0687 -1.1 -5.9 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0152 -1.1 -4.6 Imidazoleglycerol-phosphate dehydratase compare
Psest_2324 -1.1 -7.9 hypothetical protein compare
Psest_0398 -1.1 -5.5 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_0955 -1.1 -4.9 D,L-lactate:H+ symporter (from data) compare
Psest_3546 -1.1 -1.5 Phosphatidylglycerophosphatase A and related proteins compare
Psest_0442 -1.0 -1.9 ATPases of the AAA+ class compare
Psest_2325 -1.0 -5.9 alpha-L-glutamate ligase-related protein compare
Psest_1103 -1.0 -2.5 GTP-binding protein YchF compare
Psest_1804 -1.0 -0.9 Superfamily II DNA and RNA helicases compare
Psest_1724 -1.0 -3.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2578 -1.0 -7.2 O-succinylhomoserine sulfhydrylase compare
Psest_3944 -1.0 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0297 -1.0 -4.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3766 -1.0 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_2712 -1.0 -3.8 Surface lipoprotein compare
Psest_2809 -1.0 -2.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0708 -0.9 -1.4 outer membrane assembly lipoprotein YfiO compare
Psest_3721 -0.9 -5.9 Malic enzyme compare
Psest_3298 -0.9 -5.9 histidinol dehydrogenase compare
Psest_0212 -0.9 -2.0 exodeoxyribonuclease V, gamma subunit compare
Psest_0153 -0.9 -5.3 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3415 -0.9 -7.9 hypothetical protein compare
Psest_1532 -0.9 -1.8 DNA recombination-dependent growth factor C compare
Psest_3767 -0.9 -2.8 tyrosine recombinase XerC compare
Psest_0257 -0.9 -1.5 Predicted Zn-dependent peptidases compare
Psest_4298 -0.9 -1.3 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_3943 -0.9 -4.0 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2766 -0.9 -1.3 hypothetical protein compare
Psest_4097 -0.8 -6.4 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1888 -0.8 -1.2 Sua5/YciO/YrdC/YwlC family protein compare
Psest_3069 -0.8 -2.6 3-oxoadipate enol-lactonase compare
Psest_3416 -0.8 -6.2 Predicted ATPase (AAA+ superfamily) compare
Psest_0697 -0.8 -2.4 ribosomal protein L9 compare
Psest_0411 -0.8 -5.3 biotin synthetase compare
Psest_0193 -0.8 -1.1 conserved hypothetical protein compare
Psest_1322 -0.8 -1.8 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_0601 -0.8 -1.7 hypothetical protein compare
Psest_0529 -0.8 -4.7 Putative Mg2+ and Co2+ transporter CorC compare
Psest_2872 -0.8 -1.2 protein RecA compare
Psest_2945 -0.8 -0.8 septum site-determining protein MinC compare
Psest_0310 -0.8 -2.4 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2018 -0.7 -1.7 Uncharacterized conserved protein compare
Psest_2333 -0.7 -1.0 Protein of unknown function (DUF3359). compare
Psest_3420 -0.7 -5.7 Predicted Zn peptidase compare
Psest_2323 -0.7 -5.0 Uncharacterized protein conserved in archaea compare
Psest_1163 -0.7 -3.2 diguanylate cyclase (GGDEF) domain compare
Psest_1692 -0.7 -3.6 conserved hypothetical protein, YceG family compare
Psest_4406 -0.7 -1.3 hypothetical protein compare
Psest_1951 -0.7 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1242 -0.7 -1.2 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2933 -0.7 -5.0 Signal transduction histidine kinase compare
Psest_1008 -0.7 -1.1 hypothetical protein compare
Psest_0412 -0.7 -5.0 8-amino-7-oxononanoate synthase compare
Psest_4363 -0.7 -4.0 ATPases involved in chromosome partitioning compare
Psest_1463 -0.7 -1.2 SufE protein probably involved in Fe-S center assembly compare
Psest_1905 -0.7 -1.5 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_0414 -0.7 -3.0 biotin biosynthesis protein BioC compare
Psest_4128 -0.7 -1.1 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3044 -0.7 -2.8 deoxycytidine triphosphate deaminase compare
Psest_2714 -0.7 -1.1 7-cyano-7-deazaguanine reductase compare
Psest_3862 -0.7 -5.3 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2935 -0.7 -2.4 hypothetical protein compare
Psest_3447 -0.7 -1.8 Uncharacterized MobA-related protein compare
Psest_0306 -0.7 -5.3 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0609 -0.7 -1.6 hypothetical protein compare
Psest_2411 -0.7 -4.2 PAS domain S-box compare
Psest_1320 -0.7 -2.9 phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein compare
Psest_0413 -0.6 -2.8 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3813 -0.6 -4.2 ribonuclease PH compare
Psest_1259 -0.6 -2.8 23S rRNA m2A2503 methyltransferase compare
Psest_3806 -0.6 -4.1 Phosphomannomutase compare
Psest_4350 -0.6 -2.7 Transcriptional regulators of sugar metabolism compare
Psest_2545 -0.6 -1.8 recombination protein RecR compare
Psest_0415 -0.6 -1.8 dethiobiotin synthase compare
Psest_4370 -0.6 -2.1 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_4345 -0.6 -4.5 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2810 -0.6 -2.9 5'/3'-nucleotidase SurE compare
Psest_1565 -0.6 -2.7 RND family efflux transporter, MFP subunit compare
Psest_3288 -0.6 -4.8 type IV-A pilus assembly ATPase PilB compare
Psest_0805 -0.6 -1.8 hypothetical protein compare
Psest_4220 -0.6 -1.4 Protein of unknown function (DUF2782). compare
Psest_0021 -0.6 -3.0 ribosomal RNA small subunit methyltransferase RsmB compare
Psest_2538 -0.6 -0.8 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1056 -0.6 -1.8 2-isopropylmalate synthase, bacterial type compare
Psest_4098 -0.6 -1.7 Superfamily I DNA and RNA helicases compare
Psest_0662 -0.6 -1.3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_4070 -0.6 -4.5 PAS domain S-box compare
Psest_1816 -0.6 -3.3 hypothetical protein compare
Psest_2988 -0.6 -3.4 aspartate kinase, monofunctional class compare
Psest_2085 -0.6 -3.8 Periplasmic serine proteases (ClpP class) compare
Psest_0286 -0.6 -4.0 pilus retraction protein PilT compare
Psest_1954 -0.6 -1.6 hypothetical protein compare
Psest_3304 -0.6 -2.6 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3988 -0.6 -3.8 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_1765 -0.6 -3.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0031 -0.6 -1.6 Uncharacterized conserved protein compare
Psest_0445 -0.6 -4.3 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_2864 -0.6 -2.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2030 -0.5 -2.5 leucyl/phenylalanyl-tRNA--protein transferase compare
Psest_4199 -0.5 -2.9 general secretion pathway protein H compare
Psest_1743 -0.5 -2.9 Chemotaxis protein histidine kinase and related kinases compare
Psest_3317 -0.5 -2.4 Phosphotransferase System HPr (HPr) Family compare
Psest_3307 -0.5 -3.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3090 -0.5 -2.8 DNA repair protein RecO compare
Psest_2605 -0.5 -1.5 transcriptional activator RfaH compare
Psest_0281 -0.5 -3.0 Dynamin family. compare
Psest_3180 -0.5 -3.1 Exonuclease I compare
Psest_3174 -0.5 -3.7 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_0346 -0.5 -1.2 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_1118 -0.5 -1.8 Predicted Fe-S-cluster oxidoreductase compare
Psest_3323 -0.5 -2.4 ribonuclease, Rne/Rng family compare
Psest_3565 -0.5 -1.0 hypothetical protein compare
Psest_1886 -0.5 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_4149 -0.5 -2.2 fagellar hook-basal body proteins compare
Psest_2026 -0.5 -3.2 Uncharacterized conserved protein compare
Psest_0296 -0.5 -3.5 glutathione synthetase, prokaryotic compare
Psest_1814 -0.5 -4.0 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_4393 -0.5 -2.6 Capsule polysaccharide export protein compare
Psest_1922 -0.5 -3.4 aminopeptidase N, Escherichia coli type compare
Psest_4221 -0.5 -1.8 homoserine kinase, Neisseria type compare
Psest_1510 -0.5 -1.4 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3247 -0.5 -1.1 Uncharacterized membrane protein compare
Psest_3850 -0.5 -0.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1610 -0.5 -2.1 hypothetical protein compare
Psest_0491 -0.5 -3.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1261 -0.5 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_3853 -0.5 -1.6 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_4170 -0.5 -1.0 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_2092 -0.5 -1.4 hypothetical protein compare
Psest_0998 -0.5 -1.1 poly(A) polymerase compare
Psest_0158 -0.5 -3.1 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_2500 -0.5 -1.5 hypothetical protein compare
Psest_2320 -0.5 -2.5 2-methylcitrate synthase/citrate synthase II compare
Psest_1866 -0.5 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_0485 -0.5 -1.3 clan AA aspartic protease, TIGR02281 family compare
Psest_2489 -0.5 -3.1 branched-chain amino acid uptake carrier compare
Psest_0498 -0.5 -0.3 ribosome small subunit-dependent GTPase A compare
Psest_2969 -0.5 -2.4 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3129 -0.5 -0.5 tyrosine recombinase XerD compare
Psest_4252 -0.5 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_2761 -0.5 -1.6 Uncharacterized protein with SCP/PR1 domains compare
Psest_4126 -0.5 -1.4 Predicted peroxiredoxins compare
Psest_3151 -0.5 -1.1 hypothetical protein compare
Psest_1666 -0.4 -2.5 PilZ domain. compare
Psest_2000 -0.4 -1.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3531 -0.4 -0.9 Peptidase propeptide and YPEB domain. compare
Psest_1302 -0.4 -2.0 Predicted thioesterase compare
Psest_1406 -0.4 -2.6 His Kinase A (phosphoacceptor) domain./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_3212 -0.4 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments

For metal limitation Kanamycin sulfate across organisms