Experiment set14H43 for Pseudomonas stutzeri RCH2

Compare to:

Anaerobic 500 uM Zinc chloride sample3

200 most important genes:

  gene name fitness t score description  
Psest_3168 -5.8 -4.0 Molybdopterin converting factor, large subunit compare
Psest_0529 -4.8 -17.2 Putative Mg2+ and Co2+ transporter CorC compare
Psest_3301 -4.2 -4.1 Predicted transcriptional regulator, BolA superfamily compare
Psest_2234 -4.2 -16.1 oxygen-independent coproporphyrinogen III oxidase compare
Psest_1115 -4.2 -5.7 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_2067 -3.9 -2.7 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3483 -3.9 -9.5 respiratory nitrate reductase, gamma subunit compare
Psest_3480 -3.9 -5.0 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3485 -3.8 -17.6 nitrate reductase, beta subunit compare
Psest_0616 -3.8 -25.5 heavy metal efflux pump (cobalt-zinc-cadmium) conserved
Psest_3489 -3.7 -17.8 hypothetical protein compare
Psest_3322 -3.7 -25.0 TIGR02099 family protein compare
Psest_1961 -3.6 -17.0 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3479 -3.6 -9.6 molybdenum cofactor synthesis domain compare
Psest_3170 -3.6 -6.5 molybdenum cofactor biosynthesis protein MoaC compare
Psest_2325 -3.5 -12.9 alpha-L-glutamate ligase-related protein compare
Psest_2324 -3.5 -19.3 hypothetical protein compare
Psest_0615 -3.5 -18.7 RND family efflux transporter, MFP subunit compare
Psest_0613 -3.5 -13.7 hypothetical protein compare
Psest_3136 -3.4 -11.9 Putative Mg2+ and Co2+ transporter CorB compare
Psest_0614 -3.4 -22.3 Outer membrane protein compare
Psest_3486 -3.4 -22.2 respiratory nitrate reductase, alpha subunit compare
Psest_1473 -3.3 -10.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1657 -3.2 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1724 -3.1 -6.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2579 -3.1 -7.9 amidophosphoribosyltransferase compare
Psest_3226 -3.1 -2.8 Predicted membrane protein compare
Psest_0725 -3.1 -2.1 Negative regulator of beta-lactamase expression compare
Psest_1496 -3.0 -2.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_2967 -3.0 -8.3 flagellar basal-body rod protein FlgC compare
Psest_3720 -3.0 -20.8 penicillin-binding protein, 1A family compare
Psest_3484 -2.9 -8.9 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_3650 -2.9 -13.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1013 -2.7 -4.0 phosphoribosylamine--glycine ligase compare
Psest_0186 -2.6 -7.2 Protein-disulfide isomerase compare
Psest_2968 -2.6 -10.6 flagellar basal-body rod protein FlgB compare
Psest_3488 -2.5 -5.2 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0508 -2.4 -10.7 gamma-glutamyl phosphate reductase compare
Psest_0610 -2.4 -17.8 heavy metal sensor kinase compare
Psest_1824 -2.4 -4.4 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_0611 -2.4 -12.7 heavy metal response regulator compare
Psest_0257 -2.3 -5.1 Predicted Zn-dependent peptidases compare
Psest_2232 -2.3 -13.9 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_3384 -2.3 -9.4 glutamate 5-kinase compare
Psest_1765 -2.3 -7.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3762 -2.2 -4.5 iron donor protein CyaY compare
Psest_3647 -2.2 -4.7 Indole-3-glycerol phosphate synthase compare
Psest_2304 -2.2 -2.7 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0515 -2.1 -3.2 rare lipoprotein A compare
Psest_2333 -2.1 -2.0 Protein of unknown function (DUF3359). compare
Psest_2018 -2.0 -2.9 Uncharacterized conserved protein compare
Psest_1837 -2.0 -10.3 Endoglucanase compare
Psest_1809 -1.9 -13.0 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1819 -1.9 -14.7 Nucleoside-diphosphate-sugar epimerases compare
Psest_3744 -1.9 -6.9 Disulfide bond formation protein DsbB compare
Psest_3159 -1.9 -7.6 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0952 -1.8 -4.1 Uncharacterized conserved protein compare
Psest_0533 -1.8 -5.9 Sel1 repeat. compare
Psest_3482 -1.8 -4.9 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0393 -1.8 -10.5 Methylase of chemotaxis methyl-accepting proteins compare
Psest_2988 -1.8 -8.4 aspartate kinase, monofunctional class compare
Psest_0828 -1.8 -7.3 Nitric oxide reductase activation protein compare
Psest_3490 -1.8 -5.4 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_1679 -1.8 -2.9 ribonuclease, Rne/Rng family compare
Psest_3092 -1.8 -2.5 ribonuclease III, bacterial compare
Psest_1511 -1.7 -4.4 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1655 -1.7 -3.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3995 -1.7 -4.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1814 -1.7 -13.5 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1472 -1.7 -8.2 Protein of unknown function (DUF3108). compare
Psest_1656 -1.7 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2759 -1.7 -9.8 Co/Zn/Cd efflux system component compare
Psest_0953 -1.7 -7.7 iron-sulfur cluster-binding protein compare
Psest_3338 -1.7 -1.1 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1532 -1.7 -3.6 DNA recombination-dependent growth factor C compare
Psest_1295 -1.7 -7.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0954 -1.7 -7.2 Fe-S oxidoreductase compare
Psest_0837 -1.7 -4.3 Putative lipid carrier protein compare
Psest_1822 -1.7 -7.6 Glycosyltransferases involved in cell wall biogenesis compare
Psest_2641 -1.7 -12.0 Conserved secreted protein compare
Psest_0799 -1.7 -5.9 Uncharacterized protein involved in response to NO compare
Psest_3648 -1.6 -6.8 anthranilate phosphoribosyltransferase compare
Psest_3000 -1.6 -8.4 molybdate ABC transporter, permease protein compare
Psest_2999 -1.6 -5.8 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_0063 -1.6 -2.8 tryptophan synthase, beta subunit compare
Psest_0814 -1.6 -3.6 MoxR-like ATPases compare
Psest_1661 -1.5 -1.0 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2584 -1.5 -4.6 Phosphoribosylanthranilate isomerase compare
Psest_3649 -1.5 -7.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2329 -1.5 -11.6 Transcriptional regulator compare
Psest_1474 -1.5 -2.7 phosphoribosylaminoimidazole synthetase compare
Psest_1818 -1.4 -9.4 GDP-mannose 4,6-dehydratase compare
Psest_1805 -1.4 -3.3 integration host factor, beta subunit compare
Psest_1625 -1.4 -5.6 hypothetical protein compare
Psest_3351 -1.4 -3.5 peptide chain release factor 3 compare
Psest_1486 -1.4 -3.7 hypothetical protein compare
Psest_3487 -1.4 -5.8 Nitrate/nitrite transporter compare
Psest_0062 -1.4 -2.6 tryptophan synthase, alpha subunit compare
Psest_0835 -1.3 -10.9 Collagenase and related proteases compare
Psest_3001 -1.3 -4.1 molybdenum ABC transporter, ATP-binding protein compare
Psest_2001 -1.3 -1.7 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3766 -1.3 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_2651 -1.3 -2.2 DNA topoisomerase I, bacterial compare
Psest_0514 -1.3 -5.5 lytic murein transglycosylase B compare
Psest_1012 -1.3 -3.9 Signal transduction histidine kinase compare
Psest_3843 -1.3 -8.4 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3323 -1.3 -4.7 ribonuclease, Rne/Rng family compare
Psest_1103 -1.3 -2.3 GTP-binding protein YchF compare
Psest_3565 -1.3 -1.8 hypothetical protein compare
Psest_3571 -1.2 -7.9 Outer membrane protein W compare
Psest_3341 -1.2 -10.9 Outer membrane receptor for ferrienterochelin and colicins compare
Psest_0836 -1.2 -7.3 Collagenase and related proteases compare
Psest_2104 -1.2 -0.8 IscR-regulated protein YhgI compare
Psest_0826 -1.2 -6.6 Cytochrome c compare
Psest_3481 -1.2 -5.9 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_1659 -1.2 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0498 -1.1 -0.7 ribosome small subunit-dependent GTPase A compare
Psest_3927 -1.1 -3.6 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_1660 -1.1 -1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3377 -1.1 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2538 -1.1 -2.1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0790 -1.1 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_3042 -1.1 -1.8 Nitrate reductase cytochrome c-type subunit compare
Psest_0827 -1.1 -9.0 Nitric oxide reductase large subunit compare
Psest_1692 -1.1 -7.4 conserved hypothetical protein, YceG family compare
Psest_1259 -1.1 -4.1 23S rRNA m2A2503 methyltransferase compare
Psest_1260 -1.1 -6.1 type IV pilus biogenesis/stability protein PilW compare
Psest_0697 -1.0 -2.4 ribosomal protein L9 compare
Psest_4345 -1.0 -6.4 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_1510 -1.0 -3.0 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0459 -1.0 -6.8 Predicted carbamoyl transferase, NodU family compare
Psest_2490 -1.0 -7.2 succinyl-CoA synthetase, alpha subunit compare
Psest_1813 -1.0 -7.0 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_1463 -1.0 -1.6 SufE protein probably involved in Fe-S center assembly compare
Psest_2285 -1.0 -2.4 ATP-dependent protease La compare
Psest_4405 -1.0 -1.3 hypothetical protein compare
Psest_2491 -1.0 -5.3 succinyl-CoA synthetase, beta subunit compare
Psest_0144 -1.0 -4.1 Fe-S cluster protector protein compare
Psest_2323 -1.0 -5.1 Uncharacterized protein conserved in archaea compare
Psest_4078 -1.0 -2.0 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1242 -1.0 -2.2 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1663 -1.0 -3.0 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0442 -0.9 -1.6 ATPases of the AAA+ class compare
Psest_4191 -0.9 -1.4 Transcriptional regulator compare
Psest_0066 -0.9 -2.0 Protein of unknown function (DUF3060). compare
Psest_3031 -0.9 -1.1 hypothetical protein compare
Psest_2442 -0.9 -2.9 hypothetical protein compare
Psest_0575 -0.9 -1.3 HrpA-like helicases compare
Psest_0872 -0.9 -1.6 Helix-turn-helix. compare
Psest_1293 -0.8 -2.6 VanZ like family. compare
Psest_2872 -0.8 -1.7 protein RecA compare
Psest_0133 -0.8 -1.3 type VI secretion protein, VC_A0107 family compare
Psest_2066 -0.8 -1.5 ABC-type uncharacterized transport system, permease component compare
Psest_3795 -0.8 -5.7 Glycine/D-amino acid oxidases (deaminating) compare
Psest_2975 -0.8 -2.6 tRNA_Arg_CCT compare
Psest_2971 -0.8 -4.6 flagella basal body P-ring formation protein FlgA compare
Psest_2586 -0.8 -7.1 FimV N-terminal domain compare
Psest_2585 -0.8 -1.0 pseudouridylate synthase I compare
Psest_4363 -0.8 -4.0 ATPases involved in chromosome partitioning compare
Psest_3718 -0.8 -3.7 Tfp pilus assembly protein PilN compare
Psest_0955 -0.8 -3.5 D,L-lactate:H+ symporter (from data) compare
Psest_1741 -0.8 -2.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0181 -0.8 -3.8 glycine cleavage system T protein compare
Psest_2712 -0.8 -2.9 Surface lipoprotein compare
Psest_4098 -0.7 -1.9 Superfamily I DNA and RNA helicases compare
Psest_0297 -0.7 -2.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1643 -0.7 -1.3 hypothetical protein compare
Psest_1812 -0.7 -5.3 pseudaminic acid CMP-transferase compare
Psest_1167 -0.7 -1.3 hypothetical protein compare
Psest_0516 -0.7 -4.6 D-alanyl-D-alanine carboxypeptidase compare
Psest_1518 -0.7 -2.0 tRNA_Ser_CGA compare
Psest_2188 -0.7 -4.5 AraC-type DNA-binding domain-containing proteins compare
Psest_3806 -0.7 -5.0 Phosphomannomutase compare
Psest_1974 -0.7 -1.8 integration host factor, alpha subunit compare
Psest_1920 -0.7 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3306 -0.7 -2.9 conserved hypothetical integral membrane protein compare
Psest_3174 -0.7 -5.8 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2613 -0.7 -1.4 hypothetical protein compare
Psest_0193 -0.7 -0.9 conserved hypothetical protein compare
Psest_1008 -0.7 -1.3 hypothetical protein compare
Psest_1695 -0.7 -2.3 Tfp pilus assembly protein PilZ compare
Psest_1947 -0.7 -0.6 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3719 -0.7 -5.2 type IV pilus assembly protein PilM compare
Psest_4291 -0.7 -3.5 agmatine deiminase compare
Psest_0998 -0.7 -1.4 poly(A) polymerase compare
Psest_0300 -0.7 -5.2 Methyl-accepting chemotaxis protein compare
Psest_4219 -0.7 -1.2 DNA polymerase I compare
Psest_3838 -0.7 -2.0 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_3862 -0.7 -5.0 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2580 -0.6 -3.1 Uncharacterized membrane protein, required for colicin V production compare
Psest_0958 -0.6 -2.8 Oligoketide cyclase/lipid transport protein compare
Psest_0813 -0.6 -3.3 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_3715 -0.6 -5.5 type IV pilus secretin (or competence protein) PilQ compare
Psest_2864 -0.6 -2.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3177 -0.6 -1.7 hypothetical protein compare
Psest_3085 -0.6 -4.3 methyltransferase, putative compare
Psest_3988 -0.6 -3.0 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_3809 -0.6 -2.6 hypothetical protein compare
Psest_0461 -0.6 -2.8 Glycosyltransferase involved in LPS biosynthesis compare
Psest_1815 -0.6 -4.9 pseudaminic acid synthase compare


Specific Phenotypes

For 10 genes in this experiment

For stress Zinc chloride in Pseudomonas stutzeri RCH2

For stress Zinc chloride across organisms