Experiment set14H4 for Pseudomonas stutzeri RCH2

Compare to:

Aerobic, with iron sample1

200 most important genes:

  gene name fitness t score description  
Psest_1473 -4.3 -8.6 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0062 -4.2 -14.1 tryptophan synthase, alpha subunit compare
Psest_3384 -3.9 -11.7 glutamate 5-kinase compare
Psest_0718 -3.9 -5.9 nicotinate-nucleotide pyrophosphorylase compare
Psest_0063 -3.8 -14.0 tryptophan synthase, beta subunit compare
Psest_0508 -3.6 -12.7 gamma-glutamyl phosphate reductase compare
Psest_0845 -3.6 -1.5 hypothetical protein compare
Psest_2584 -3.2 -9.3 Phosphoribosylanthranilate isomerase compare
Psest_3650 -3.2 -16.7 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3647 -3.0 -9.4 Indole-3-glycerol phosphate synthase compare
Psest_1509 -3.0 -9.1 quinolinate synthetase complex, A subunit compare
Psest_3648 -2.9 -9.9 anthranilate phosphoribosyltransferase compare
Psest_0952 -2.8 -4.1 Uncharacterized conserved protein compare
Psest_2579 -2.5 -3.0 amidophosphoribosyltransferase compare
Psest_0280 -2.4 -15.1 homoserine O-acetyltransferase compare
Psest_0313 -2.3 -5.7 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1295 -2.3 -5.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3944 -2.1 -7.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0155 -2.1 -9.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3843 -2.1 -8.7 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0954 -2.0 -8.8 Fe-S oxidoreductase compare
Psest_0687 -1.9 -9.0 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0953 -1.8 -10.3 iron-sulfur cluster-binding protein compare
Psest_3226 -1.8 -1.8 Predicted membrane protein compare
Psest_2578 -1.8 -11.7 O-succinylhomoserine sulfhydrylase compare
Psest_3351 -1.8 -6.6 peptide chain release factor 3 compare
Psest_4191 -1.7 -1.7 Transcriptional regulator compare
Psest_3298 -1.7 -11.6 histidinol dehydrogenase compare
Psest_1679 -1.7 -2.2 ribonuclease, Rne/Rng family compare
Psest_0279 -1.7 -6.1 methionine biosynthesis protein MetW compare
Psest_0398 -1.7 -6.5 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_0697 -1.7 -3.6 ribosomal protein L9 compare
Psest_3943 -1.6 -5.3 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3299 -1.6 -10.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0152 -1.6 -5.8 Imidazoleglycerol-phosphate dehydratase compare
Psest_1686 -1.6 -5.8 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0393 -1.5 -7.9 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1661 -1.5 -1.7 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0153 -1.5 -8.8 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3910 -1.5 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_1474 -1.5 -1.0 phosphoribosylaminoimidazole synthetase compare
Psest_2018 -1.4 -2.9 Uncharacterized conserved protein compare
Psest_3864 -1.4 -10.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3998 -1.4 -5.6 glutamate--cysteine ligase compare
Psest_1012 -1.3 -2.8 Signal transduction histidine kinase compare
Psest_1660 -1.3 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2651 -1.3 -1.7 DNA topoisomerase I, bacterial compare
Psest_0515 -1.3 -3.3 rare lipoprotein A compare
Psest_2324 -1.3 -10.1 hypothetical protein compare
Psest_2104 -1.3 -1.4 IscR-regulated protein YhgI compare
Psest_1724 -1.3 -3.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1804 -1.2 -1.2 Superfamily II DNA and RNA helicases compare
Psest_3766 -1.2 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1013 -1.2 -1.4 phosphoribosylamine--glycine ligase compare
Psest_1505 -1.2 -2.0 Organic radical activating enzymes compare
Psest_3113 -1.2 -2.0 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0998 -1.2 -2.3 poly(A) polymerase compare
Psest_4003 -1.2 -4.3 TIGR00153 family protein compare
Psest_4406 -1.2 -1.7 hypothetical protein compare
Psest_3301 -1.2 -1.8 Predicted transcriptional regulator, BolA superfamily compare
Psest_3159 -1.2 -3.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1259 -1.1 -4.6 23S rRNA m2A2503 methyltransferase compare
Psest_0529 -1.1 -5.9 Putative Mg2+ and Co2+ transporter CorC compare
Psest_4363 -1.1 -5.4 ATPases involved in chromosome partitioning compare
Psest_0955 -1.1 -4.7 D,L-lactate:H+ symporter (from data) compare
Psest_1496 -1.0 -1.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_2088 -1.0 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3767 -1.0 -2.9 tyrosine recombinase XerC compare
Psest_2988 -1.0 -4.9 aspartate kinase, monofunctional class compare
Psest_2872 -1.0 -1.7 protein RecA compare
Psest_3862 -1.0 -7.6 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2325 -1.0 -5.2 alpha-L-glutamate ligase-related protein compare
Psest_3399 -1.0 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0193 -1.0 -1.1 conserved hypothetical protein compare
Psest_0414 -0.9 -3.9 biotin biosynthesis protein BioC compare
Psest_2714 -0.9 -1.5 7-cyano-7-deazaguanine reductase compare
Psest_3042 -0.9 -1.4 Nitrate reductase cytochrome c-type subunit compare
Psest_3721 -0.9 -5.6 Malic enzyme compare
Psest_1562 -0.9 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_3148 -0.9 -1.4 hypothetical protein compare
Psest_1704 -0.9 -1.1 Dehydrogenases (flavoproteins) compare
Psest_2864 -0.8 -3.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0744 -0.8 -0.9 Uncharacterized conserved protein compare
Psest_0413 -0.8 -4.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_1870 -0.8 -1.3 Transcriptional regulators compare
Psest_3317 -0.8 -2.5 Phosphotransferase System HPr (HPr) Family compare
Psest_3297 -0.8 -5.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1659 -0.8 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3649 -0.8 -4.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2757 -0.8 -1.1 hypothetical protein compare
Psest_0442 -0.8 -1.5 ATPases of the AAA+ class compare
Psest_1765 -0.8 -3.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3988 -0.8 -4.6 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0411 -0.7 -5.3 biotin synthetase compare
Psest_3044 -0.7 -2.7 deoxycytidine triphosphate deaminase compare
Psest_2148 -0.7 -3.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1657 -0.7 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2285 -0.7 -1.8 ATP-dependent protease La compare
Psest_4252 -0.7 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_3304 -0.7 -3.0 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_0154 -0.7 -3.1 Uncharacterized conserved protein compare
Psest_3303 -0.7 -3.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2460 -0.7 -1.8 hypothetical protein compare
Psest_0359 -0.7 -2.0 Transcriptional regulators compare
Psest_3114 -0.7 -3.6 electron transport complex, RnfABCDGE type, C subunit compare
Psest_4177 -0.7 -1.8 flagellar biosynthetic protein FliP compare
Psest_4298 -0.7 -0.9 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_1868 -0.7 -3.3 yecA family protein compare
Psest_3960 -0.7 -1.6 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1115 -0.7 -1.4 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1293 -0.7 -1.6 VanZ like family. compare
Psest_1056 -0.7 -1.9 2-isopropylmalate synthase, bacterial type compare
Psest_2085 -0.7 -4.3 Periplasmic serine proteases (ClpP class) compare
Psest_2023 -0.7 -1.5 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_0722 -0.7 -3.0 Predicted ATPase compare
Psest_2308 -0.7 -0.8 Predicted Fe-S protein compare
Psest_3488 -0.6 -2.6 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2323 -0.6 -4.5 Uncharacterized protein conserved in archaea compare
Psest_2411 -0.6 -3.9 PAS domain S-box compare
Psest_4315 -0.6 -1.6 ABC-type metal ion transport system, permease component compare
Psest_4350 -0.6 -2.7 Transcriptional regulators of sugar metabolism compare
Psest_0306 -0.6 -5.2 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_1249 -0.6 -2.6 serine O-acetyltransferase compare
Psest_2333 -0.6 -0.9 Protein of unknown function (DUF3359). compare
Psest_2719 -0.6 -0.7 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3878 -0.6 -1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3483 -0.6 -4.1 respiratory nitrate reductase, gamma subunit compare
Psest_3927 -0.6 -2.1 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_1700 -0.6 -2.1 Transcriptional regulator compare
Psest_0867 -0.6 -1.1 hypothetical protein compare
Psest_2885 -0.6 -2.6 Acyl carrier protein compare
Psest_0415 -0.6 -2.6 dethiobiotin synthase compare
Psest_3115 -0.6 -2.6 electron transport complex, RnfABCDGE type, D subunit compare
Psest_3146 -0.6 -1.7 hypothetical protein compare
Psest_4070 -0.6 -4.6 PAS domain S-box compare
Psest_1163 -0.6 -2.3 diguanylate cyclase (GGDEF) domain compare
Psest_3853 -0.6 -2.1 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_0601 -0.6 -1.4 hypothetical protein compare
Psest_3447 -0.6 -1.4 Uncharacterized MobA-related protein compare
Psest_0831 -0.6 -1.0 hypothetical protein compare
Psest_3415 -0.6 -5.0 hypothetical protein compare
Psest_0401 -0.6 -2.0 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_3339 -0.6 -2.5 Signal transduction histidine kinase compare
Psest_2545 -0.6 -1.7 recombination protein RecR compare
Psest_2933 -0.6 -4.1 Signal transduction histidine kinase compare
Psest_2339 -0.6 -3.0 transcription elongation factor GreB compare
Psest_2030 -0.6 -2.5 leucyl/phenylalanyl-tRNA--protein transferase compare
Psest_0311 -0.6 -2.8 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_2585 -0.6 -0.7 pseudouridylate synthase I compare
Psest_3305 -0.6 -3.4 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1518 -0.6 -1.4 tRNA_Ser_CGA compare
Psest_1204 -0.5 -1.3 Transcriptional regulators compare
Psest_4124 -0.5 -2.2 hypothetical protein compare
Psest_1506 -0.5 -2.2 queuosine biosynthesis protein QueC compare
Psest_0296 -0.5 -3.5 glutathione synthetase, prokaryotic compare
Psest_2648 -0.5 -1.1 hypothetical protein compare
Psest_2712 -0.5 -2.4 Surface lipoprotein compare
Psest_3745 -0.5 -1.8 Uncharacterized enzyme of heme biosynthesis compare
Psest_0660 -0.5 -1.5 Methyl-accepting chemotaxis protein compare
Psest_1863 -0.5 -1.8 hypothetical protein compare
Psest_2027 -0.5 -3.8 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_3813 -0.5 -2.9 ribonuclease PH compare
Psest_2786 -0.5 -1.0 Domain of unknown function (DUF3597). compare
Psest_3995 -0.5 -1.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3230 -0.5 -2.4 Uncharacterized conserved protein compare
Psest_2243 -0.5 -0.9 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_2278 -0.5 -1.4 coenzyme PQQ biosynthesis protein PqqD compare
Psest_2503 -0.5 -3.0 hypothetical protein compare
Psest_4345 -0.5 -3.4 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2791 -0.5 -1.5 hypothetical protein compare
Psest_3962 -0.5 -1.3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_1692 -0.5 -2.7 conserved hypothetical protein, YceG family compare
Psest_3247 -0.5 -1.1 Uncharacterized membrane protein compare
Psest_4243 -0.5 -1.2 type VI secretion lipoprotein, VC_A0113 family compare
Psest_1532 -0.5 -1.2 DNA recombination-dependent growth factor C compare
Psest_1349 -0.5 -1.5 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3420 -0.5 -4.0 Predicted Zn peptidase compare
Psest_2810 -0.5 -1.7 5'/3'-nucleotidase SurE compare
Psest_3536 -0.5 -1.0 hypothetical protein compare
Psest_2981 -0.5 -1.0 sodium pump decarboxylases, gamma subunit compare
Psest_1860 -0.5 -1.8 Uncharacterized conserved protein compare
Psest_0031 -0.5 -1.5 Uncharacterized conserved protein compare
Psest_1491 -0.5 -1.8 Cold shock proteins compare
Psest_3860 -0.5 -1.4 Predicted permeases compare
Psest_3288 -0.5 -3.8 type IV-A pilus assembly ATPase PilB compare
Psest_2967 -0.5 -2.4 flagellar basal-body rod protein FlgC compare
Psest_0426 -0.5 -2.0 Transposase and inactivated derivatives compare
Psest_3212 -0.5 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2357 -0.5 -1.9 Short-chain dehydrogenases of various substrate specificities compare
Psest_3306 -0.4 -1.7 conserved hypothetical integral membrane protein compare
Psest_2613 -0.4 -0.9 hypothetical protein compare
Psest_2329 -0.4 -3.6 Transcriptional regulator compare
Psest_4098 -0.4 -1.3 Superfamily I DNA and RNA helicases compare
Psest_1261 -0.4 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_2072 -0.4 -2.9 Methyltransferase domain. compare
Psest_2097 -0.4 -2.5 EamA-like transporter family. compare
Psest_3307 -0.4 -2.8 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1655 -0.4 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3236 -0.4 -1.3 hypothetical protein compare
Psest_2110 -0.4 -1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments

For metal limitation Kanamycin sulfate across organisms