Experiment set14H39 for Pseudomonas stutzeri RCH2

Compare to:

Lactate Nitrate anaeroibic, no iron sample3

200 most important genes:

  gene name fitness t score description  
Psest_3301 -3.2 -3.3 Predicted transcriptional regulator, BolA superfamily compare
Psest_2579 -3.2 -7.7 amidophosphoribosyltransferase compare
Psest_2234 -3.1 -15.7 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3647 -2.8 -5.0 Indole-3-glycerol phosphate synthase compare
Psest_1013 -2.7 -3.7 phosphoribosylamine--glycine ligase compare
Psest_1473 -2.6 -10.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3720 -2.5 -18.9 penicillin-binding protein, 1A family compare
Psest_0508 -2.3 -9.5 gamma-glutamyl phosphate reductase compare
Psest_3384 -2.2 -8.9 glutamate 5-kinase compare
Psest_3226 -2.0 -2.7 Predicted membrane protein compare
Psest_1656 -2.0 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3395 -1.9 -2.3 hypothetical protein compare
Psest_3159 -1.9 -6.8 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1805 -1.8 -3.0 integration host factor, beta subunit compare
Psest_1657 -1.8 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1655 -1.6 -3.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1532 -1.6 -3.5 DNA recombination-dependent growth factor C compare
Psest_2067 -1.6 -2.1 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2988 -1.6 -7.0 aspartate kinase, monofunctional class compare
Psest_1474 -1.6 -2.1 phosphoribosylaminoimidazole synthetase compare
Psest_0063 -1.5 -2.7 tryptophan synthase, beta subunit compare
Psest_3479 -1.5 -4.9 molybdenum cofactor synthesis domain compare
Psest_2944 -1.4 -1.0 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_2651 -1.4 -2.1 DNA topoisomerase I, bacterial compare
Psest_0998 -1.4 -2.4 poly(A) polymerase compare
Psest_3484 -1.4 -6.3 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_1660 -1.4 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1837 -1.3 -8.6 Endoglucanase compare
Psest_1115 -1.3 -4.1 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3092 -1.3 -2.0 ribonuclease III, bacterial compare
Psest_2285 -1.3 -2.5 ATP-dependent protease La compare
Psest_1242 -1.2 -2.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1295 -1.2 -5.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3170 -1.2 -5.9 molybdenum cofactor biosynthesis protein MoaC compare
Psest_0718 -1.2 -2.7 nicotinate-nucleotide pyrophosphorylase compare
Psest_0846 -1.2 -2.6 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_1486 -1.2 -3.0 hypothetical protein compare
Psest_1625 -1.2 -3.7 hypothetical protein compare
Psest_3480 -1.2 -3.1 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_2304 -1.1 -2.0 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_3485 -1.1 -8.1 nitrate reductase, beta subunit compare
Psest_1961 -1.1 -8.7 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_2324 -1.1 -9.1 hypothetical protein compare
Psest_3486 -1.1 -9.3 respiratory nitrate reductase, alpha subunit compare
Psest_1809 -1.1 -7.5 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1818 -1.1 -7.9 GDP-mannose 4,6-dehydratase compare
Psest_3648 -1.1 -4.7 anthranilate phosphoribosyltransferase compare
Psest_0257 -1.0 -2.1 Predicted Zn-dependent peptidases compare
Psest_3001 -1.0 -5.3 molybdenum ABC transporter, ATP-binding protein compare
Psest_2325 -1.0 -6.8 alpha-L-glutamate ligase-related protein compare
Psest_0799 -1.0 -2.1 Uncharacterized protein involved in response to NO compare
Psest_3113 -1.0 -1.6 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1822 -1.0 -5.6 Glycosyltransferases involved in cell wall biogenesis compare
Psest_3490 -1.0 -3.6 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_2872 -1.0 -1.8 protein RecA compare
Psest_3489 -1.0 -5.9 hypothetical protein compare
Psest_1686 -1.0 -4.6 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1659 -1.0 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3351 -1.0 -2.8 peptide chain release factor 3 compare
Psest_3650 -1.0 -6.9 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3483 -1.0 -5.6 respiratory nitrate reductase, gamma subunit compare
Psest_0558 -1.0 -1.3 urease, beta subunit compare
Psest_0969 -1.0 -1.1 transcription elongation factor GreA compare
Psest_0442 -1.0 -1.5 ATPases of the AAA+ class compare
Psest_1724 -1.0 -3.7 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1819 -0.9 -7.9 Nucleoside-diphosphate-sugar epimerases compare
Psest_1814 -0.9 -7.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0828 -0.9 -4.3 Nitric oxide reductase activation protein compare
Psest_1509 -0.9 -5.5 quinolinate synthetase complex, A subunit compare
Psest_3000 -0.9 -5.9 molybdate ABC transporter, permease protein compare
Psest_2001 -0.9 -1.2 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2232 -0.9 -6.7 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_2584 -0.9 -2.9 Phosphoribosylanthranilate isomerase compare
Psest_3862 -0.9 -6.6 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0872 -0.9 -1.6 Helix-turn-helix. compare
Psest_2718 -0.9 -1.3 hypothetical protein compare
Psest_3168 -0.9 -2.3 Molybdopterin converting factor, large subunit compare
Psest_2911 -0.8 -2.4 Protein of unknown function (DUF2945). compare
Psest_3002 -0.8 -1.8 Putative translation initiation inhibitor, yjgF family compare
Psest_3518 -0.8 -1.7 Transcriptional regulators compare
Psest_3571 -0.8 -5.1 Outer membrane protein W compare
Psest_3100 -0.8 -1.7 RNA polymerase sigma factor RpoE compare
Psest_3843 -0.8 -5.3 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3487 -0.8 -5.7 Nitrate/nitrite transporter compare
Psest_3488 -0.8 -2.8 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3338 -0.8 -0.9 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1947 -0.8 -0.5 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0529 -0.8 -4.5 Putative Mg2+ and Co2+ transporter CorC compare
Psest_0953 -0.8 -5.5 iron-sulfur cluster-binding protein compare
Psest_0144 -0.8 -4.0 Fe-S cluster protector protein compare
Psest_1292 -0.8 -4.0 monothiol glutaredoxin, Grx4 family compare
Psest_1511 -0.8 -3.0 Predicted redox protein, regulator of disulfide bond formation compare
Psest_2809 -0.8 -1.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2333 -0.8 -1.1 Protein of unknown function (DUF3359). compare
Psest_1765 -0.8 -5.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3850 -0.8 -1.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4098 -0.8 -2.0 Superfamily I DNA and RNA helicases compare
Psest_3117 -0.7 -1.7 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1012 -0.7 -2.5 Signal transduction histidine kinase compare
Psest_1516 -0.7 -1.5 Uncharacterized lipoprotein compare
Psest_2999 -0.7 -3.5 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_0843 -0.7 -4.0 hypothetical protein compare
Psest_4191 -0.7 -1.2 Transcriptional regulator compare
Psest_3112 -0.7 -2.2 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0814 -0.7 -2.1 MoxR-like ATPases compare
Psest_3115 -0.7 -2.8 electron transport complex, RnfABCDGE type, D subunit compare
Psest_2104 -0.7 -0.6 IscR-regulated protein YhgI compare
Psest_2848 -0.7 -3.1 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_0309 -0.7 -0.7 RND family efflux transporter, MFP subunit compare
Psest_4390 -0.7 -2.2 hypothetical protein compare
Psest_3998 -0.7 -3.3 glutamate--cysteine ligase compare
Psest_3766 -0.7 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_4103 -0.7 -1.1 AraC-type DNA-binding domain-containing proteins compare
Psest_0310 -0.6 -1.4 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2850 -0.6 -1.1 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0498 -0.6 -0.6 ribosome small subunit-dependent GTPase A compare
Psest_2581 -0.6 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_1249 -0.6 -2.9 serine O-acetyltransferase compare
Psest_0954 -0.6 -3.8 Fe-S oxidoreductase compare
Psest_1815 -0.6 -4.9 pseudaminic acid synthase compare
Psest_2136 -0.6 -4.2 Predicted homoserine dehydrogenase compare
Psest_1631 -0.6 -0.9 Uncharacterized conserved small protein compare
Psest_0066 -0.6 -1.5 Protein of unknown function (DUF3060). compare
Psest_2323 -0.6 -4.5 Uncharacterized protein conserved in archaea compare
Psest_3481 -0.6 -3.2 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_3904 -0.6 -1.2 hypothetical protein compare
Psest_3339 -0.6 -2.6 Signal transduction histidine kinase compare
Psest_3123 -0.6 -0.8 dihydroorotase, homodimeric type compare
Psest_0958 -0.6 -2.4 Oligoketide cyclase/lipid transport protein compare
Psest_0114 -0.6 -1.9 RNA polymerase sigma factor, sigma-70 family compare
Psest_0507 -0.6 -2.5 Uncharacterized membrane-associated protein compare
Psest_1679 -0.5 -1.2 ribonuclease, Rne/Rng family compare
Psest_0028 -0.5 -2.2 Coproporphyrinogen III oxidase compare
Psest_2265 -0.5 -2.0 Outer membrane protein compare
Psest_0133 -0.5 -1.3 type VI secretion protein, VC_A0107 family compare
Psest_2901 -0.5 -1.1 hypothetical protein compare
Psest_1230 -0.5 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_3146 -0.5 -1.4 hypothetical protein compare
Psest_2849 -0.5 -3.8 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit compare
Psest_1692 -0.5 -3.4 conserved hypothetical protein, YceG family compare
Psest_3649 -0.5 -3.2 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0673 -0.5 -2.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_1636 -0.5 -2.9 putative transporter, required for glycine utilization (from data) compare
Psest_0993 -0.5 -3.3 Glucose-6-phosphate isomerase compare
Psest_1248 -0.5 -2.8 RNA methyltransferase, TrmH family, group 1 compare
Psest_4363 -0.5 -2.7 ATPases involved in chromosome partitioning compare
Psest_2766 -0.5 -1.0 hypothetical protein compare
Psest_3044 -0.5 -2.9 deoxycytidine triphosphate deaminase compare
Psest_0325 -0.5 -3.1 Putative threonine efflux protein compare
Psest_4276 -0.5 -1.9 hypothetical protein compare
Psest_0952 -0.5 -1.3 Uncharacterized conserved protein compare
Psest_3762 -0.5 -1.6 iron donor protein CyaY compare
Psest_4003 -0.5 -2.0 TIGR00153 family protein compare
Psest_4371 -0.5 -1.8 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_2490 -0.5 -3.8 succinyl-CoA synthetase, alpha subunit compare
Psest_2090 -0.5 -1.9 Protein of unknown function (DUF2970). compare
Psest_2711 -0.5 -1.7 PilZ domain. compare
Psest_2188 -0.5 -3.0 AraC-type DNA-binding domain-containing proteins compare
Psest_2851 -0.5 -4.1 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit compare
Psest_4252 -0.5 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_1985 -0.5 -2.3 histidinol-phosphate aminotransferase compare
Psest_1661 -0.5 -0.6 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0827 -0.5 -3.9 Nitric oxide reductase large subunit compare
Psest_2810 -0.5 -1.8 5'/3'-nucleotidase SurE compare
Psest_0515 -0.5 -1.4 rare lipoprotein A compare
Psest_1562 -0.5 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_1162 -0.5 -1.5 Spermidine synthase compare
Psest_3813 -0.5 -2.9 ribonuclease PH compare
Psest_2329 -0.5 -3.8 Transcriptional regulator compare
Psest_3795 -0.5 -3.2 Glycine/D-amino acid oxidases (deaminating) compare
Psest_0675 -0.5 -2.0 Predicted periplasmic lipoprotein compare
Psest_0684 -0.5 -2.2 GTP-binding protein HflX compare
Psest_0533 -0.4 -2.1 Sel1 repeat. compare
Psest_3698 -0.4 -2.6 Predicted exporter compare
Psest_1306 -0.4 -1.1 hypothetical protein compare
Psest_3482 -0.4 -2.2 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0459 -0.4 -3.0 Predicted carbamoyl transferase, NodU family compare
Psest_3745 -0.4 -1.5 Uncharacterized enzyme of heme biosynthesis compare
Psest_2186 -0.4 -2.2 Protein of unknown function (DUF1656). compare
Psest_0062 -0.4 -1.4 tryptophan synthase, alpha subunit compare
Psest_2122 -0.4 -1.1 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1259 -0.4 -1.9 23S rRNA m2A2503 methyltransferase compare
Psest_0826 -0.4 -3.0 Cytochrome c compare
Psest_0073 -0.4 -1.9 ABC-type multidrug transport system, ATPase and permease components compare
Psest_2894 -0.4 -1.4 addiction module antidote protein, HigA family compare
Psest_0955 -0.4 -2.5 D,L-lactate:H+ symporter (from data) compare
Psest_0844 -0.4 -1.3 High-affinity Fe2+/Pb2+ permease compare
Psest_0227 -0.4 -1.8 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_0041 -0.4 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_2725 -0.4 -1.7 hypothetical protein compare
Psest_1556 -0.4 -2.0 hypothetical protein compare
Psest_3399 -0.4 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_0696 -0.4 -1.9 hypothetical protein compare
Psest_3317 -0.4 -1.5 Phosphotransferase System HPr (HPr) Family compare
Psest_3114 -0.4 -1.9 electron transport complex, RnfABCDGE type, C subunit compare
Psest_3128 -0.4 -1.8 Protein-disulfide isomerase compare
Psest_3206 -0.4 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_3413 -0.4 -1.6 hypothetical protein compare
Psest_2442 -0.4 -1.3 hypothetical protein compare
Psest_1813 -0.4 -2.9 pseudaminic acid biosynthesis-associated protein PseG compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments